Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.6e-130 468.8 241 100.0
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.8e-118 428.3 241 92.9
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.3e-99 365.9 242 80.6
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 9.5e-93 344.0 252 74.6
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 9.5e-85 317.4 249 67.5
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 9.5e-85 317.4 249 67.5
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 4.7e-84 315.1 244 67.2
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.3e-83 312.8 244 67.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 3.1e-83 312.4 244 70.5
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 7.6e-82 307.8 244 65.2
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.3e-81 307.0 244 64.3
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 2.9e-81 305.8 249 67.9
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 8.4e-81 304.3 244 64.3
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 4.1e-80 302.0 244 65.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 1.6e-79 300.1 244 64.3
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 5.6e-77 291.6 249 63.9
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 5.6e-77 291.6 252 63.9
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 5.6e-77 291.6 252 62.7
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.1e-75 285.8 252 63.5
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 6.8e-75 284.6 250 59.6
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 4.4e-74 282.0 250 58.4
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 4.2e-72 275.4 187 74.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 5.4e-72 275.0 220 64.1
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 7.1e-72 274.6 251 58.2
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 9.3e-72 274.2 250 57.2
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.6e-71 273.5 241 59.8
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.5e-71 272.3 208 63.9
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.6e-71 271.9 236 60.6
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 1.7e-70 270.0 241 57.7
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 3.0e-70 269.2 244 58.2
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 3.0e-70 269.2 218 62.8
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 6.6e-70 268.1 187 72.7
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 6.6e-70 268.1 236 59.3
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.5e-69 266.9 250 56.0
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.9e-69 266.5 187 72.2
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.5e-69 266.2 210 64.8
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.5e-69 266.2 244 57.8
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.3e-69 265.4 244 57.8
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 4.3e-69 265.4 240 56.2
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 5.6e-69 265.0 239 58.2
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 9.6e-69 264.2 244 56.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.6e-68 263.5 248 57.7
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.1e-68 263.1 210 62.4
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.8e-68 262.7 240 57.5
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 3.6e-68 262.3 217 59.9
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 4.8e-68 261.9 190 68.4
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.4e-67 260.4 230 61.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 4.0e-67 258.8 236 57.6
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 4.0e-67 258.8 193 67.4
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 5.3e-67 258.5 196 63.8
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 9.0e-67 257.7 185 68.6
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.5e-66 256.9 241 57.3
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.5e-66 256.9 241 57.3
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.5e-66 256.9 216 58.8
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.5e-66 256.9 213 61.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.0e-66 256.5 240 56.2
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 2.0e-66 256.5 249 55.0
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 2.6e-66 256.1 220 60.5
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 2.6e-66 256.1 249 55.4
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.4e-66 255.8 208 62.5
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 4.4e-66 255.4 191 68.1
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 5.8e-66 255.0 200 66.0
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 9.9e-66 254.2 241 56.4
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.3e-65 253.8 198 65.2
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.2e-65 253.1 189 67.7
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.2e-65 253.1 189 67.7
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.8e-65 252.3 180 68.9
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 4.9e-65 251.9 186 68.3
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.9e-64 250.0 191 65.4
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.9e-64 250.0 210 62.9
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 7.1e-64 248.1 245 56.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 7.1e-64 248.1 210 62.4
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 7.1e-64 248.1 194 73.7
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.6e-63 245.4 247 53.0
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 6.0e-63 245.0 243 53.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.3e-62 243.8 149 77.9
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.7e-62 243.4 241 53.5
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 1.7e-62 243.4 221 55.2
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 3.0e-62 242.7 201 59.2
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.9e-62 242.3 183 62.8
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.1e-62 241.9 187 62.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.1e-62 241.9 241 53.9
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.6e-62 241.5 241 49.8
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.6e-62 241.5 204 60.8
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 8.7e-62 241.1 177 68.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-61 240.7 203 58.1
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.5e-61 240.4 236 55.5
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 1.5e-61 240.4 183 62.8
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.5e-61 240.4 243 53.5
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 2.5e-61 239.6 213 60.1
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 3.3e-61 239.2 179 66.5
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 7.4e-61 238.0 181 65.7
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 7.4e-61 238.0 200 66.0
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.6e-61 237.7 245 54.3
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.8e-60 236.1 197 59.9
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.8e-60 235.3 152 72.4
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.0e-59 232.3 152 71.1
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.2e-58 230.7 201 56.7
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.5e-58 230.3 182 60.4
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 2.2e-57 226.5 199 57.8
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.9e-57 226.1 183 59.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 3.8e-57 225.7 189 61.9
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 6.4e-57 224.9 260 48.5
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.1e-56 224.2 246 51.6
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.4e-56 223.8 163 69.3
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.9e-56 223.4 266 48.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 6.0e-55 218.4 134 75.4
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 6.0e-55 218.4 157 67.5
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.0e-54 217.6 142 72.5
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 1.3e-54 217.2 156 66.0
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.3e-54 216.5 151 68.2
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.9e-54 215.7 151 67.5
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 5.1e-54 215.3 164 61.6
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 5.1e-54 215.3 145 69.0
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 8.7e-54 214.5 129 79.8
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 1.9e-53 213.4 143 71.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 3.3e-53 212.6 145 68.3
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.0e-51 204.5 231 48.1
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.5e-50 203.8 182 58.2
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.5e-50 203.8 182 52.7
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 2.0e-50 203.4 184 58.2
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.5e-50 202.2 231 47.2
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 1.7e-49 200.3 230 46.5
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 8.4e-49 198.0 180 54.4
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.7e-47 193.0 156 62.8
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.3e-46 189.9 171 58.5
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 1.3e-44 184.1 201 49.8
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 4.8e-44 182.2 166 54.2
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 6.9e-43 178.3 169 51.5
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.2e-42 177.6 249 43.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.5e-42 177.2 149 55.7
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 3.4e-42 176.0 173 59.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 5.9e-42 175.3 174 53.4
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.7e-41 173.7 181 51.4
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 8.5e-41 171.4 139 54.0
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 3.2e-40 169.5 244 42.6
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.2e-39 167.5 198 50.5
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 6.9e-35 151.8 126 60.3
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.3e-33 147.5 148 56.1
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.4e-32 144.1 231 41.6
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 5.5e-32 142.1 145 53.8
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.6e-31 139.4 191 42.9
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 1.0e-25 121.3 151 48.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.5e-24 116.7 127 47.2
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 6.3e-20 102.1 79 59.5
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.2e-17 93.6 132 34.8
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.9e-17 93.2 158 34.2
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.9e-17 93.2 150 34.7
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 7.5e-13 78.6 83 54.2
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.2e-12 77.0 150 30.0
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 2.4e-11 73.6 151 29.8
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.5e-09 65.5 96 39.6
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.5e-08 63.5 121 31.4
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.5e-08 63.5 152 31.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.5e-08 63.5 124 27.4
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 8.0e-07 58.5 119 38.7


User provided reference genes

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