Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 8.2e-186 653.7 353 100.0
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 1.5e-147 526.6 353 82.7
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 3.4e-147 525.4 353 82.7
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 1.1e-132 477.2 354 75.7
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 2.9e-122 442.6 354 71.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 2.5e-110 402.9 342 67.0
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 6.2e-109 398.3 358 64.0
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 4.0e-108 395.6 353 67.4
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 4.0e-108 395.6 355 63.9
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 3.8e-106 389.0 355 62.8
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 9.3e-105 384.4 375 63.2
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.6e-104 383.6 358 63.7
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 3.5e-104 382.5 356 62.1
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.8e-103 380.2 356 61.8
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 3.9e-103 379.0 355 64.2
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 6.7e-103 378.3 359 62.4
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.5e-102 377.1 353 62.9
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.5e-102 376.3 353 62.9
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.6e-101 373.6 357 62.7
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 2.1e-101 373.2 357 63.6
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 3.7e-101 372.5 357 62.7
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.7e-101 372.5 359 61.3
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.2e-101 371.7 357 62.5
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 6.2e-101 371.7 357 62.2
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 3.1e-100 369.4 360 61.9
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 9.0e-100 367.9 355 61.7
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 4.5e-99 365.5 357 61.6
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 7.6e-99 364.8 354 60.5
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 7.6e-99 364.8 358 60.9
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.3e-98 364.0 358 61.5
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.7e-98 363.6 356 62.9
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 6.5e-98 361.7 358 60.9
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 6.5e-98 361.7 356 59.8
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 8.4e-98 361.3 357 61.3
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.4e-97 360.5 357 60.5
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 1.9e-97 360.1 355 59.4
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.5e-97 359.8 355 60.3
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 4.2e-97 359.0 353 60.9
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 5.5e-97 358.6 354 61.0
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 5.5e-97 358.6 355 60.3
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 7.1e-97 358.2 355 61.1
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 9.3e-97 357.8 362 59.9
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 3.5e-96 355.9 354 60.5
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 3.5e-96 355.9 356 60.1
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 4.6e-96 355.5 355 61.1
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 4.6e-96 355.5 359 59.3
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.3e-95 354.0 354 59.3
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 2.3e-95 353.2 354 59.0
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 3.9e-95 352.4 356 61.0
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 3.9e-95 352.4 357 60.8
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 3.9e-95 352.4 233 82.8
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 5.1e-95 352.1 353 58.6
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 5.1e-95 352.1 354 60.5
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 6.7e-95 351.7 354 59.3
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 6.7e-95 351.7 367 58.9
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.7e-95 351.7 356 58.4
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.5e-94 350.5 356 58.4
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.9e-94 350.1 354 59.6
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.9e-94 350.1 354 59.6
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.9e-94 350.1 376 58.2
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 3.3e-94 349.4 359 58.8
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 4.3e-94 349.0 355 60.3
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 6.3e-93 345.1 357 58.8
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.1e-92 344.4 357 59.1
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.1e-92 342.8 354 60.2
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 3.1e-92 342.8 354 60.2
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 4.1e-92 342.4 367 57.2
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 5.3e-92 342.0 356 58.1
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 5.3e-92 342.0 357 58.8
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 9.0e-92 341.3 356 57.9
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 2.0e-91 340.1 353 58.9
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.4e-91 339.3 354 57.3
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.0e-90 335.5 347 59.1
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 5.0e-90 335.5 358 57.5
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.9e-89 333.6 355 57.2
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.9e-89 333.6 423 50.8
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 9.3e-89 331.3 355 56.3
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.2e-88 330.9 370 55.4
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.6e-88 329.3 358 58.9
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.6e-88 329.3 358 58.9
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 3.6e-88 329.3 354 56.2
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 4.6e-88 328.9 355 57.2
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 3.9e-87 325.9 353 56.7
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 6.7e-87 325.1 346 56.1
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 5.7e-86 322.0 348 57.2
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.1e-84 317.8 361 55.4
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.5e-83 313.9 355 56.3
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.3e-82 310.8 358 55.3
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 6.5e-82 308.5 363 55.1
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 8.5e-82 308.1 344 55.8
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 2.7e-80 303.1 405 49.9
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.8e-79 300.4 303 60.4
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 4.1e-76 289.3 300 58.3
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 6.5e-74 282.0 356 51.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 2.1e-72 276.9 254 61.8
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 2.1e-72 276.9 237 66.7
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.0e-71 274.6 359 49.0
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 3.0e-71 273.1 387 47.5
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.1e-68 264.6 355 48.5
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 9.1e-68 261.5 191 73.3
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.9e-58 229.9 361 47.6
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 1.1e-57 228.0 337 44.5
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 5.9e-51 205.7 207 60.4
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 6.1e-48 195.7 233 52.8
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 8.0e-48 195.3 205 57.1
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 3.7e-45 186.4 321 43.6
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 5.4e-44 182.6 143 69.9
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 8.0e-40 168.7 380 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 2.6e-38 163.7 295 38.0
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 3.2e-36 156.8 239 43.5
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 7.0e-36 155.6 243 42.8
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.7e-35 153.7 206 51.5
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.9e-33 147.5 133 63.2
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 2.8e-32 143.7 95 82.1
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 8.9e-31 138.7 232 45.3
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 1.7e-29 134.4 114 64.9
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 3.5e-27 126.7 351 33.3
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.0e-26 125.2 95 68.4
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 3.1e-23 113.6 236 40.7
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 8.9e-23 112.1 375 29.9
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 2.4e-20 104.0 100 60.0
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 5.4e-20 102.8 284 35.9
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 4.6e-19 99.8 317 31.2
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.4e-15 87.4 96 49.0
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 8.9e-15 85.5 70 61.4
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 7.6e-14 82.4 123 46.3
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.4e-12 78.2 240 32.5
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 9.2e-12 75.5 74 58.1
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 3.0e-10 70.5 86 50.0
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 6.6e-10 69.3 89 51.7
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.5e-09 68.2 46 76.1
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 3.6e-08 63.5 125 41.6


User provided reference genes

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