Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 4.5e-56 221.1 117 100.0
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 3.1e-49 198.4 117 92.3
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 4.2e-38 161.4 120 73.3
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 5.7e-35 151.0 91 84.6
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 6.8e-28 127.5 85 74.1
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 6.8e-28 127.5 117 60.7
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 5.8e-27 124.4 97 68.0
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 7.5e-27 124.0 84 72.6
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 4.6e-24 114.8 125 54.4
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 8.6e-23 110.5 116 54.3
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 1.1e-22 110.2 117 53.8
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 2.8e-21 105.5 92 63.0
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.2e-19 100.1 93 63.4
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 2.6e-19 99.0 87 58.6
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 3.7e-18 95.1 86 57.0
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 4.9e-18 94.7 90 61.1
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 2.4e-17 92.4 70 68.6
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 5.4e-17 91.3 67 68.7
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 2.1e-16 89.4 80 57.5
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 2.7e-16 89.0 79 59.5
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 4.6e-16 88.2 77 61.0
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.6e-16 88.2 75 58.7
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 1.3e-15 86.7 68 66.2
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 1.7e-15 86.3 77 59.7
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 2.3e-15 85.9 75 62.7
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 5.1e-15 84.7 75 60.0
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 6.6e-15 84.3 68 64.7
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 6.6e-15 84.3 66 60.6
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 8.6e-15 84.0 61 72.1
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 1.1e-14 83.6 80 57.5
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.5e-14 83.2 62 67.7
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 2.5e-14 82.4 67 62.7
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.3e-14 82.0 67 59.7
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 7.3e-14 80.9 75 60.0
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 7.3e-14 80.9 77 59.7
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 9.5e-14 80.5 74 60.8
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 9.5e-14 80.5 65 63.1
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 2.1e-13 79.3 63 60.3
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.1e-13 79.3 63 60.3
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 2.1e-13 79.3 63 60.3
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 2.1e-13 79.3 64 62.5
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 6.2e-13 77.8 63 60.3
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 1.1e-12 77.0 64 62.5
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.1e-12 77.0 68 61.8
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.1e-12 77.0 68 61.8
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.1e-12 77.0 68 61.8
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.1e-12 77.0 73 60.3
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 2.3e-12 75.9 50 70.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 5.2e-12 74.7 78 56.4
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 6.8e-12 74.3 65 63.1
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 6.8e-12 74.3 85 51.8
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 8.9e-12 73.9 45 73.3
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 1.2e-11 73.6 76 55.3
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 1.5e-11 73.2 104 44.2
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 2.0e-11 72.8 67 61.2
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 2.0e-11 72.8 46 76.1
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 4.4e-11 71.6 60 58.3
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 4.4e-11 71.6 54 64.8
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 4.4e-11 71.6 60 60.0
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.8e-11 71.2 46 73.9
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.8e-11 71.2 53 71.7
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.8e-11 71.2 75 56.0
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 7.5e-11 70.9 70 54.3
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.2e-10 69.3 75 54.7
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.2e-10 69.3 75 56.0
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 2.2e-10 69.3 75 52.0
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 4.9e-10 68.2 63 58.7
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 8.3e-10 67.4 71 53.5
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.1e-09 67.0 53 64.2
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-09 67.0 70 52.9
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 1.1e-09 67.0 70 52.9
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 1.4e-09 66.6 69 58.0
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 1.9e-09 66.2 60 58.3
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 2.4e-09 65.9 64 56.2
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 2.4e-09 65.9 50 66.0
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 2.4e-09 65.9 50 66.0
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 2.4e-09 65.9 100 42.0
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 3.2e-09 65.5 54 59.3
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 3.2e-09 65.5 54 59.3
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 3.2e-09 65.5 54 59.3
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 4.1e-09 65.1 54 59.3
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 5.4e-09 64.7 54 57.4
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 5.4e-09 64.7 54 57.4
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 5.4e-09 64.7 57 59.6
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 5.4e-09 64.7 108 41.7
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 7.1e-09 64.3 73 50.7
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 7.1e-09 64.3 61 55.7
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 9.2e-09 63.9 51 62.7
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 9.2e-09 63.9 66 50.0
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.2e-08 63.5 46 69.6
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 1.2e-08 63.5 63 55.6
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 1.6e-08 63.2 51 62.7
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 1.6e-08 63.2 51 62.7
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 2.1e-08 62.8 51 62.7
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 2.1e-08 62.8 45 68.9
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 2.7e-08 62.4 45 66.7
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 2.7e-08 62.4 57 57.9
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 3.5e-08 62.0 54 59.3
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 6.0e-08 61.2 85 45.9
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 7.8e-08 60.8 62 54.8
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 3.0e-07 58.9 60 53.3
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 6.6e-07 57.8 60 53.3
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 1.5e-06 56.6 52 55.8
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 1.5e-06 56.6 54 59.3
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 1.9e-06 56.2 53 58.5
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 2.5e-06 55.8 63 49.2
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.3e-06 55.5 57 56.1


User provided reference genes

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