Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g013130 Medicago truncatula HOM05D000284 ORTHO05D261797 2.7e-73 278.5 134 100.0
Medtr6g013050 Medicago truncatula HOM05D000284 ORTHO05D002040 8.6e-11 70.9 51 64.7
arahy.Tifrunner.gnm1.ann1.BWQM5V Arachis hypogaea HOM05D000284 ORTHO05D002040 1.5e-10 70.1 77 48.1
Ca_04860_v3 Cicer arietinum L. HOM05D006813 ORTHO05D002040 4.3e-10 68.6 51 62.7
Lj2g0025936 Lotus japonicus HOM05D000284 ORTHO05D002040 4.3e-10 68.6 48 62.5
TPR.G26177 Trifolium pratense HOM05D000284 ORTHO05D002040 4.3e-10 68.6 51 60.8
VMungo0464G0229 Vigna mungo HOM05D000284 ORTHO05D002040 5.6e-10 68.2 51 60.8
DCAR_030781 Daucus carota HOM05D000284 ORTHO05D002040 1.6e-09 66.6 48 58.3
Psat1g069920 Pisum sativum HOM05D000284 ORTHO05D002040 1.6e-09 66.6 51 60.8
AT4G13700 Arabidopsis thaliana HOM05D000284 ORTHO05D002040 2.1e-09 66.2 48 60.4
Lj3A584T54 Lonicera japonica HOM05D000284 ORTHO05D002040 2.1e-09 66.2 77 45.5
THA.LOC104808726 Tarenaya hassleriana HOM05D000284 ORTHO05D002040 2.1e-09 66.2 48 60.4
arahy.Tifrunner.gnm1.ann1.S2YQMD Arachis hypogaea HOM05D000284 ORTHO05D002040 2.8e-09 65.9 51 60.8
arahy.Tifrunner.gnm1.ann1.WLS0EB Arachis hypogaea HOM05D000284 ORTHO05D002040 2.8e-09 65.9 53 58.5
Manes.03G152400 Manihot esculenta HOM05D000284 ORTHO05D002040 2.8e-09 65.9 48 60.4
Phvul.004G032300 Phaseolus vulgaris HOM05D000284 ORTHO05D002040 2.8e-09 65.9 51 58.8
Potri.003G176000 Populus trichocarpa HOM05D000284 ORTHO05D002040 2.8e-09 65.9 48 60.4
Thecc.04G211400 Theobroma cacao HOM05D000284 ORTHO05D002040 2.8e-09 65.9 48 60.4
vmacro00511 Vaccinium macrocarpon HOM05D000284 ORTHO05D002040 3.6e-09 65.5 55 58.2
AL7G42800 Arabidopsis lyrata HOM05D000284 ORTHO05D002040 8.1e-09 64.3 48 58.3
BcaC07g37338 Brassica carinata HOM05D000284 ORTHO05D002040 8.1e-09 64.3 48 58.3
C08p07790 Brassica napus HOM05D000284 ORTHO05D002040 8.1e-09 64.3 48 58.3
BolC8t47627H Brassica oleracea HOM05D000284 ORTHO05D002040 8.1e-09 64.3 48 58.3
BraA08t32684Z Brassica rapa HOM05D000284 ORTHO05D002040 8.1e-09 64.3 48 58.3
CANSAT78G0378 Cannabis sativa HOM05D000284 ORTHO05D002040 8.1e-09 64.3 77 45.5
CARHR219490 Cardamine hirsuta HOM05D000284 ORTHO05D002040 8.1e-09 64.3 48 58.3
Manes.15G050000 Manihot esculenta HOM05D000284 ORTHO05D002040 8.1e-09 64.3 48 58.3
Dinv38279 Davidia involucrata HOM05D000284 ORTHO05D002040 1.1e-08 63.9 51 58.8
Sabra03G0128900 Salix brachista HOM05D000284 ORTHO05D002040 1.1e-08 63.9 74 44.6
BcaB04g17659 Brassica carinata HOM05D000284 ORTHO05D002040 1.4e-08 63.5 51 56.9
A08p06680 Brassica napus HOM05D000284 ORTHO05D002040 1.4e-08 63.5 51 56.9
Ciclev10004621m.g Citrus clementina HOM05D000284 ORTHO05D002040 1.4e-08 63.5 48 58.3
Eucgr.H02789 Eucalyptus grandis HOM05D000284 ORTHO05D002040 1.4e-08 63.5 34 73.5
MBI07_g19557_MAGBIO Magnolia biondii HOM05D000284 ORTHO05D002040 1.8e-08 63.2 48 58.3
MD13G1231100 Malus domestica HOM05D000284 ORTHO05D002040 1.8e-08 63.2 48 58.3
Prupe.1G061000 Prunus persica HOM05D000284 ORTHO05D002040 1.8e-08 63.2 48 58.3
Rhsim09G0049700 Rhododendron simsii HOM05D000284 ORTHO05D002040 1.8e-08 63.2 55 54.5
Atru.chr4.1787 Acer truncatum HOM05D000284 ORTHO05D002040 2.4e-08 62.8 74 44.6
CSS0010982 Camellia sinensis var. sinensis HOM05D000284 ORTHO05D002040 2.4e-08 62.8 51 56.9
Carub.0007s2876 Capsella rubella HOM05D000284 ORTHO05D002040 2.4e-08 62.8 48 56.2
Hma1.2p1_0903F.1_g235170 Hydrangea macrophylla HOM05D000284 ORTHO05D002040 2.4e-08 62.8 51 56.9
Aa31LG9G3960 Aethionema arabicum HOM05D000284 ORTHO05D002040 3.1e-08 62.4 48 58.3
CiPaw.01G126400 Carya illinoinensis HOM05D000284 ORTHO05D002040 3.1e-08 62.4 48 56.2
HanXRQChr11g0342721 Helianthus annuus HOM05D000284 ORTHO05D002040 3.1e-08 62.4 77 44.2
QL06p023319 Quercus lobata HOM05D000284 ORTHO05D002040 3.1e-08 62.4 48 56.2
Sc19g0006020 Simmondsia chinensis HOM05D000284 ORTHO05D002040 3.1e-08 62.4 34 73.5
GSVIVG01029053001 Vitis vinifera HOM05D000284 ORTHO05D002040 3.1e-08 62.4 51 56.9
Ah.04g153310 Amaranthus hybridus HOM05D000284 ORTHO05D002040 4.0e-08 62.0 48 56.2
MSTRG.21945 Avicennia marina HOM05D000284 ORTHO05D002040 4.0e-08 62.0 51 54.9
AUR62032665 Chenopodium quinoa HOM05D000284 ORTHO05D002040 4.0e-08 62.0 48 56.2
AUR62035303 Chenopodium quinoa HOM05D000284 ORTHO05D002040 4.0e-08 62.0 48 56.2
Lalb_Chr21g0318521 Lupinus albus HOM05D000284 ORTHO05D002040 5.2e-08 61.6 51 56.9
Nn3g19891 Nelumbo nucifera HOM05D000284 ORTHO05D002040 5.2e-08 61.6 61 50.8
Zm00001eb176760 Zea mays HOM05D000284 ORTHO05D002040 5.2e-08 61.6 60 46.7
ATR0787G061 Amborella trichopoda HOM05D000284 ORTHO05D002040 6.8e-08 61.2 48 56.2
Haze_11556 Corylus avellana HOM05D000284 ORTHO05D002040 6.8e-08 61.2 48 54.2
TWI73G0238 Tripterygium wilfordii HOM05D000284 ORTHO05D002040 6.8e-08 61.2 74 41.9
Duzib212G0833 Durio zibethinus HOM05D000284 ORTHO05D002040 8.9e-08 60.8 48 56.2
ECA248G1699 Erigeron canadensis HOM05D000284 ORTHO05D002040 8.9e-08 60.8 77 42.9
Aqoxy2G03806 Aquilegia oxysepala HOM05D000284 ORTHO05D002040 1.2e-07 60.5 48 54.2
Glyma.19G026600 Glycine max HOM05D000284 ORTHO05D002040 1.2e-07 60.5 77 42.9
Pp3c24_19930 Physcomitrium patens HOM05D000284 ORTHO05D002040 1.2e-07 60.5 72 38.9
EL10Ac3g06790 Beta vulgaris HOM05D000284 ORTHO05D002040 1.5e-07 60.1 48 54.2
Cc03_g07240 Coffea canephora HOM05D000284 ORTHO05D002040 1.5e-07 60.1 51 52.9
Thhalv10027496m.g Eutrema salsugineum HOM05D000284 ORTHO05D002040 1.5e-07 60.1 48 56.2
PSO063G7288 Papaver somniferum HOM05D000284 ORTHO05D002040 1.5e-07 60.1 48 54.2
Actinidia34636 Actinidia chinensis HOM05D000284 ORTHO05D002040 2.0e-07 59.7 51 52.9
AagrBONN_evm.TU.Sc2ySwM_228.3285 Anthoceros agrestis HOM05D000284 ORTHO05D002040 2.0e-07 59.7 51 52.9
AL5G12160 Arabidopsis lyrata HOM05D000284 ORTHO05D002040 2.0e-07 59.7 48 56.2
SalBow3G0499 Salvia bowleyana HOM05D000284 ORTHO05D002040 2.0e-07 59.7 48 54.2
TAR362G0797 Trochodendron aralioides HOM05D000284 ORTHO05D002040 2.0e-07 59.7 62 46.8
Cfa021916 Carpinus fangiana HOM05D000284 ORTHO05D002040 2.6e-07 59.3 48 52.1
FvH4_5g29910 Fragaria vesca HOM05D000284 ORTHO05D002040 2.6e-07 59.3 51 54.9
FAN04G2820 Fragaria x ananassa HOM05D000284 ORTHO05D002040 2.6e-07 59.3 51 54.9
FAN18G4500 Fragaria x ananassa HOM05D000284 ORTHO05D002040 2.6e-07 59.3 51 54.9
Gohir.D10G144900 Gossypium hirsutum HOM05D000284 ORTHO05D002040 2.6e-07 59.3 48 54.2
Gorai.011G161800 Gossypium raimondii HOM05D000284 ORTHO05D002040 2.6e-07 59.3 48 54.2
Lsat_1_v5_gn_1_72481 Lactuca sativa HOM05D000284 ORTHO05D002040 2.6e-07 59.3 77 41.6
SEGI_17279 Sequoiadendron giganteum HOM05D000284 ORTHO05D002040 2.6e-07 59.3 48 54.2
SEGI_34537 Sequoiadendron giganteum HOM05D000284 ORTHO05D002040 2.6e-07 59.3 48 54.2
AagrBONN_evm.TU.Sc2ySwM_344.2029 Anthoceros agrestis HOM05D000284 ORTHO05D002040 5.8e-07 58.2 48 56.2
CSS0008410 Camellia sinensis var. sinensis HOM05D000284 ORTHO05D002040 5.8e-07 58.2 51 52.9
Sed0005341 Sechium edule HOM05D000284 ORTHO05D002040 5.8e-07 58.2 48 52.1
TAR362G0764 Trochodendron aralioides HOM05D000284 ORTHO05D002040 5.8e-07 58.2 48 52.1
MELO3C006337.2 Cucumis melo HOM05D000284 ORTHO05D002040 7.6e-07 57.8 48 52.1
CsaV3_3G011270 Cucumis sativus L. HOM05D000284 ORTHO05D002040 7.6e-07 57.8 48 52.1
Nitab4.5_0000184g0210 Nicotiana tabacum HOM05D000284 ORTHO05D002040 7.6e-07 57.8 48 52.1
PGSC0003DMG400031194 Solanum tuberosum HOM05D000284 ORTHO05D002040 7.6e-07 57.8 48 52.1
PGSC0003DMG402016574 Solanum tuberosum HOM05D000284 ORTHO05D002040 7.6e-07 57.8 48 52.1
Os08g0280100 Oryza sativa ssp. japonica HOM05D000284 ORTHO05D002040 9.9e-07 57.4 60 45.0
RcHm_v2.0_Chr7g0223541 Rosa chinensis HOM05D000284 ORTHO05D002040 9.9e-07 57.4 51 52.9
RcHm_v2.0_Chr7g0223651 Rosa chinensis HOM05D000284 ORTHO05D002040 9.9e-07 57.4 51 52.9
Hund19251 Selenicereus undatus HOM05D000284 ORTHO05D002040 1.3e-06 57.0 51 51.0
Sopen04g023000 Solanum pennellii HOM05D000284 ORTHO05D002040 1.3e-06 57.0 48 52.1
CAN.G997.11 Capsicum annuum HOM05D000284 ORTHO05D002040 1.7e-06 56.6 48 52.1
ClCG05G003580 Citrullus lanatus HOM05D000284 ORTHO05D002040 1.7e-06 56.6 48 52.1
Peaxi162Scf00106g01215 Petunia axillaris HOM05D000284 ORTHO05D002040 2.2e-06 56.2 48 52.1
Ciclev10019563m.g Citrus clementina HOM05D000284 ORTHO05D002040 4.9e-06 55.1 51 49.0
Gohir.A11G138900 Gossypium hirsutum HOM05D000284 ORTHO05D002040 4.9e-06 55.1 48 50.0
Nitab4.5_0001532g0010 Nicotiana tabacum HOM05D000284 ORTHO05D002040 6.4e-06 54.7 48 50.0
Gohir.D11G145100 Gossypium hirsutum HOM05D000284 ORTHO05D002040 8.4e-06 54.3 48 47.9
Gorai.007G155600 Gossypium raimondii HOM05D000284 ORTHO05D002040 8.4e-06 54.3 51 49.0
Lj6g0010979 Lotus japonicus HOM05D000284 ORTHO05D002040 8.4e-06 54.3 48 47.9


User provided reference genes

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