Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g006930 Medicago truncatula HOM05D001111 ORTHO05D000939 1.7e-131 473.0 300 100.0
Medtr6g006950 Medicago truncatula HOM05D001111 ORTHO05D000939 2.0e-87 326.6 302 72.5
TPR.G2264 Trifolium pratense HOM05D001111 ORTHO05D000939 4.5e-60 235.7 334 57.8
Psat1g057280 Pisum sativum HOM05D001111 ORTHO05D000939 7.5e-55 218.4 331 53.2
Psat1g058560 Pisum sativum HOM05D001111 ORTHO05D000939 3.9e-51 206.1 341 48.1
Ca_04190_v3 Cicer arietinum L. HOM05D001111 ORTHO05D000939 1.2e-49 201.1 312 48.4
Psat1g057400 Pisum sativum HOM05D001111 ORTHO05D000939 6.4e-46 188.7 317 44.5
Psat1g057320 Pisum sativum HOM05D001111 ORTHO05D000939 4.6e-44 182.6 315 43.8
Glyma.05G007000 Glycine max HOM05D001111 ORTHO05D000939 2.5e-26 123.6 308 33.8
Glyma.19G007600 Glycine max HOM05D001111 ORTHO05D000939 4.7e-25 119.4 320 33.8
VMungo0464G0972 Vigna mungo HOM05D001111 ORTHO05D000939 1.8e-24 117.5 333 32.4
Phvul.004G013400 Phaseolus vulgaris HOM05D001111 ORTHO05D000939 2.0e-23 114.0 321 32.4
Lj2g0013279 Lotus japonicus HOM05D001111 ORTHO05D000939 8.4e-22 108.6 327 34.6
Glyma.16G073400 Glycine max HOM05D001111 ORTHO05D000939 3.5e-20 103.2 315 34.3
Atru.chr6.2310 Acer truncatum HOM05D001111 ORTHO05D000939 2.3e-19 100.5 319 31.7
Oeu037699.1 Olea europaea HOM05D001111 ORTHO05D000939 5.1e-19 99.4 299 30.8
Glyma.19G065000 Glycine max HOM05D001111 ORTHO05D000939 4.3e-18 96.3 313 30.7
Oeu037698.1 Olea europaea HOM05D001111 ORTHO05D000939 9.6e-18 95.1 307 30.9
Oeu043052.2 Olea europaea HOM05D001111 ORTHO05D000939 2.1e-17 94.0 300 29.0
MSTRG.24021 Avicennia marina HOM05D001111 ORTHO05D000939 4.8e-17 92.8 312 30.4
Lju41C35T12 Lonicera japonica HOM05D001111 ORTHO05D000939 1.1e-16 91.7 305 30.5
Migut.H00111 Erythranthe guttata HOM05D001111 ORTHO05D000939 5.3e-16 89.4 309 29.8
Lalb_Chr06g0176001 Lupinus albus HOM05D001111 ORTHO05D000939 6.9e-16 89.0 278 30.6
MSTRG.15514 Avicennia marina HOM05D001111 ORTHO05D000939 9.0e-16 88.6 310 29.4
CiPaw.03G039000 Carya illinoinensis HOM05D001111 ORTHO05D000939 1.2e-15 88.2 315 31.4
SGA_v2.0_scaffold224G42977 Striga asiatica HOM05D001111 ORTHO05D000939 2.0e-15 87.4 282 28.4
BcaB07g30140 Brassica carinata HOM05D001111 ORTHO05D000939 2.6e-15 87.0 308 29.5
Phvul.008G155400 Phaseolus vulgaris HOM05D001111 ORTHO05D000939 3.4e-15 86.7 304 31.2
MELO3C021548.2 Cucumis melo HOM05D001111 ORTHO05D000939 5.8e-15 85.9 325 33.2
VMungo1383G2935 Vigna mungo HOM05D001111 ORTHO05D000939 7.6e-15 85.5 303 30.7
Oeu048646.1 Olea europaea HOM05D001111 ORTHO05D000939 1.3e-14 84.7 297 28.3
SalBow7G3341 Salvia bowleyana HOM05D001111 ORTHO05D000939 1.7e-14 84.3 290 30.3
CsaV3_5G027360 Cucumis sativus L. HOM05D001111 ORTHO05D000939 2.2e-14 84.0 312 29.5
DCAR_021689 Daucus carota HOM05D001111 ORTHO05D000939 2.2e-14 84.0 291 29.9
QL02p076295 Quercus lobata HOM05D001111 ORTHO05D000939 2.2e-14 84.0 315 32.4
Sopen02g031580 Solanum pennellii HOM05D001111 ORTHO05D000939 2.2e-14 84.0 317 28.7
Peaxi162Scf00700g00061 Petunia axillaris HOM05D001111 ORTHO05D000939 2.9e-14 83.6 298 29.5
Sed0026640 Sechium edule HOM05D001111 ORTHO05D000939 2.9e-14 83.6 317 34.1
SGA_v2.0_scaffold30G12462 Striga asiatica HOM05D001111 ORTHO05D000939 4.9e-14 82.8 296 28.7
Solyc02g086810.1 Solanum lycopersicum HOM05D001111 ORTHO05D000939 6.4e-14 82.4 320 27.8
SalBow1G0495 Salvia bowleyana HOM05D001111 ORTHO05D000939 8.4e-14 82.0 302 28.8
Oeu062983.1 Olea europaea HOM05D001111 ORTHO05D000939 1.1e-13 81.6 300 29.3
Peaxi162Scf00700g00066 Petunia axillaris HOM05D001111 ORTHO05D000939 1.1e-13 81.6 300 28.7
Migut.K01372 Erythranthe guttata HOM05D001111 ORTHO05D000939 1.9e-13 80.9 305 28.5
MSTRG.3297 Avicennia marina HOM05D001111 ORTHO05D000939 2.4e-13 80.5 306 27.8
PGSC0003DMG400000492 Solanum tuberosum HOM05D001111 ORTHO05D000939 3.2e-13 80.1 323 27.2
Dinv00507 Davidia involucrata HOM05D001111 ORTHO05D000939 4.2e-13 79.7 322 28.0
Actinidia35745 Actinidia chinensis HOM05D001111 ORTHO05D000939 5.4e-13 79.3 296 29.1
Peaxi162Scf00700g00062 Petunia axillaris HOM05D001111 ORTHO05D000939 1.2e-12 78.2 305 28.5
TAR371G1086 Trochodendron aralioides HOM05D001111 ORTHO05D000939 1.2e-12 78.2 176 35.2
Lj7P592T34 Lonicera japonica HOM05D001111 ORTHO05D000939 1.6e-12 77.8 173 38.2
FAN09G0168 Fragaria x ananassa HOM05D001111 ORTHO05D000939 2.1e-12 77.4 339 28.3
Manes.15G167300 Manihot esculenta HOM05D001111 ORTHO05D000939 2.7e-12 77.0 330 28.5
Rhsim10G0021000 Rhododendron simsii HOM05D001111 ORTHO05D000939 3.5e-12 76.6 300 28.3
Aqoxy3G02945 Aquilegia oxysepala HOM05D001111 ORTHO05D000939 4.6e-12 76.3 176 34.7
CARHR149390 Cardamine hirsuta HOM05D001111 ORTHO05D000939 4.6e-12 76.3 301 30.2
PGR142G1453 Punica granatum HOM05D001111 ORTHO05D000939 4.6e-12 76.3 350 27.1
Cc07_g02140 Coffea canephora HOM05D001111 ORTHO05D000939 6.0e-12 75.9 332 28.6
FAN05G2415 Fragaria x ananassa HOM05D001111 ORTHO05D000939 6.0e-12 75.9 336 27.7
Thhalv10027885m.g Eutrema salsugineum HOM05D001111 ORTHO05D000939 7.9e-12 75.5 305 26.9
Lsat_1_v5_gn_0_13280 Lactuca sativa HOM05D001111 ORTHO05D000939 7.9e-12 75.5 302 30.8
RcHm_v2.0_Chr2g0172191 Rosa chinensis HOM05D001111 ORTHO05D000939 1.0e-11 75.1 341 28.4
Thhalv10004779m.g Eutrema salsugineum HOM05D001111 ORTHO05D000939 1.8e-11 74.3 293 30.0
TAR629G2362 Trochodendron aralioides HOM05D001111 ORTHO05D000939 1.8e-11 74.3 180 35.0
Nn4g22768 Nelumbo nucifera HOM05D001111 ORTHO05D000939 3.0e-11 73.6 268 29.5
Nitab4.5_0006281g0050 Nicotiana tabacum HOM05D001111 ORTHO05D000939 3.0e-11 73.6 314 26.8
FAN02G0682 Fragaria x ananassa HOM05D001111 ORTHO05D000939 3.9e-11 73.2 337 27.9
Duzib187G0831 Durio zibethinus HOM05D001111 ORTHO05D000939 5.1e-11 72.8 309 29.8
Nitab4.5_0009783g0040 Nicotiana tabacum HOM05D001111 ORTHO05D000939 5.1e-11 72.8 159 32.7
Sc16g0003590 Simmondsia chinensis HOM05D001111 ORTHO05D000939 5.1e-11 72.8 291 27.1
CANSAT64G1643 Cannabis sativa HOM05D001111 ORTHO05D000939 6.7e-11 72.4 341 26.4
Lj1g0001602 Lotus japonicus HOM05D001111 ORTHO05D000939 6.7e-11 72.4 309 28.5
MSTRG.3168 Avicennia marina HOM05D001111 ORTHO05D000939 8.7e-11 72.0 305 27.2
A02p35670 Brassica napus HOM05D001111 ORTHO05D000939 8.7e-11 72.0 281 27.8
BraA02t08569Z Brassica rapa HOM05D001111 ORTHO05D000939 8.7e-11 72.0 281 27.8
FvH4_6g50800 Fragaria vesca HOM05D001111 ORTHO05D000939 8.7e-11 72.0 339 27.7
Nitab4.5_0007719g0040 Nicotiana tabacum HOM05D001111 ORTHO05D000939 8.7e-11 72.0 159 32.1
ClCG09G018990 Citrullus lanatus HOM05D001111 ORTHO05D000939 1.1e-10 71.6 314 32.8
FAN14G5221 Fragaria x ananassa HOM05D001111 ORTHO05D000939 1.1e-10 71.6 339 27.7
TWI36G0293 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 1.5e-10 71.2 297 27.3
BcaC06g33776 Brassica carinata HOM05D001111 ORTHO05D000939 1.9e-10 70.9 286 28.7
C07p37050 Brassica napus HOM05D001111 ORTHO05D000939 1.9e-10 70.9 286 28.7
BolC7t44217H Brassica oleracea HOM05D001111 ORTHO05D000939 1.9e-10 70.9 286 28.7
Manes.17G116400 Manihot esculenta HOM05D001111 ORTHO05D000939 2.5e-10 70.5 313 29.1
Thecc.04G010500 Theobroma cacao HOM05D001111 ORTHO05D000939 2.5e-10 70.5 314 26.8
Aa31LG2G4860 Aethionema arabicum HOM05D001111 ORTHO05D000939 4.3e-10 69.7 312 26.9
Peaxi162Scf00700g00055 Petunia axillaris HOM05D001111 ORTHO05D000939 4.3e-10 69.7 333 27.0
BcaC03g17493 Brassica carinata HOM05D001111 ORTHO05D000939 5.6e-10 69.3 281 26.7
BolC2t11514H Brassica oleracea HOM05D001111 ORTHO05D000939 5.6e-10 69.3 281 26.7
Oeu060136.1 Olea europaea HOM05D001111 ORTHO05D000939 5.6e-10 69.3 309 28.5
Peaxi162Scf00129g00116 Petunia axillaris HOM05D001111 ORTHO05D000939 5.6e-10 69.3 307 24.8
PGSC0003DMG400024504 Solanum tuberosum HOM05D001111 ORTHO05D000939 5.6e-10 69.3 259 28.2
AL5G17370 Arabidopsis lyrata HOM05D001111 ORTHO05D000939 9.6e-10 68.6 293 26.6
CiPaw.04G025400 Carya illinoinensis HOM05D001111 ORTHO05D000939 9.6e-10 68.6 304 32.2
Nitab4.5_0004348g0010 Nicotiana tabacum HOM05D001111 ORTHO05D000939 9.6e-10 68.6 302 28.1
Haze_14681 Corylus avellana HOM05D001111 ORTHO05D000939 1.3e-09 68.2 297 28.3
QL10p011670 Quercus lobata HOM05D001111 ORTHO05D000939 1.3e-09 68.2 159 32.1
SGA_v2.0_scaffold205G41690 Striga asiatica HOM05D001111 ORTHO05D000939 1.3e-09 68.2 306 25.5
C02p54510 Brassica napus HOM05D001111 ORTHO05D000939 1.6e-09 67.8 281 26.7
C02p54560 Brassica napus HOM05D001511 ORTHO05D002368 2.1e-09 67.4 150 34.7
Lalb_Chr10g0093891 Lupinus albus HOM05D001111 ORTHO05D000939 2.1e-09 67.4 312 26.6
CSS0035264 Camellia sinensis var. sinensis HOM05D001111 ORTHO05D000939 2.8e-09 67.0 323 27.2
Nitab4.5_0007208g0010 Nicotiana tabacum HOM05D001111 ORTHO05D000939 2.8e-09 67.0 305 28.5
Hma1.2p1_0176F.1_g077400 Hydrangea macrophylla HOM05D001111 ORTHO05D000939 3.6e-09 66.6 148 33.1
Prupe.3G285800 Prunus persica HOM05D001111 ORTHO05D000939 4.8e-09 66.2 324 32.7
Sp2g16940 Schrenkiella parvula HOM05D001111 ORTHO05D000939 6.2e-09 65.9 163 33.7
BcaC06g30955 Brassica carinata HOM05D001111 ORTHO05D000939 8.1e-09 65.5 276 29.0
CDE06G1645 Ceratophyllum demersum HOM05D000875 ORTHO05D000939 8.1e-09 65.5 165 32.7
TWI56G0447 Tripterygium wilfordii HOM05D001111 ORTHO05D000939 8.1e-09 65.5 295 29.5
CDE04G3478 Ceratophyllum demersum HOM05D000875 ORTHO05D000684 1.1e-08 65.1 176 31.8
Manes.06G104800 Manihot esculenta HOM05D001111 ORTHO05D000939 1.1e-08 65.1 327 25.1
Manes.14G065800 Manihot esculenta HOM05D001111 ORTHO05D000939 1.1e-08 65.1 151 32.5
Lj5P124T59 Lonicera japonica HOM05D001111 ORTHO05D000939 1.4e-08 64.7 245 28.6
Duzib264G1045 Durio zibethinus HOM05D001111 ORTHO05D000939 1.8e-08 64.3 302 26.8
A06p40830 Brassica napus HOM05D001111 ORTHO05D000939 2.4e-08 63.9 299 27.4
CSS0041696 Camellia sinensis var. sinensis HOM05D001111 ORTHO05D000939 2.4e-08 63.9 317 27.1
TAR622G0132 Trochodendron aralioides HOM05D001111 ORTHO05D000939 2.4e-08 63.9 259 28.6
BraA06t27004Z Brassica rapa HOM05D001111 ORTHO05D000939 3.1e-08 63.5 300 27.3
THA.LOC104825335 Tarenaya hassleriana HOM05D001111 ORTHO05D000939 6.9e-08 62.4 326 25.8
MBI10_g14555_MAGBIO Magnolia biondii HOM05D001111 ORTHO05D000939 9.0e-08 62.0 159 31.4
Dinv02893 Davidia involucrata HOM05D001111 ORTHO05D000939 1.2e-07 61.6 162 31.5
Gohir.D07G227700 Gossypium hirsutum HOM05D001111 ORTHO05D000939 1.2e-07 61.6 279 29.0
Lsat_1_v5_gn_0_13361 Lactuca sativa HOM05D001111 ORTHO05D000939 1.2e-07 61.6 306 28.8
AT3G27880 Arabidopsis thaliana HOM05D001111 ORTHO05D000939 2.0e-07 60.8 289 27.7
DCAR_026134 Daucus carota HOM05D001111 ORTHO05D000939 2.0e-07 60.8 155 31.0
MSTRG.11451 Avicennia marina HOM05D001111 ORTHO05D000939 2.6e-07 60.5 141 29.8
BolC2t11519H Brassica oleracea HOM05D001111 ORTHO05D000939 2.6e-07 60.5 144 34.0
CAN.G464.40 Capsicum annuum HOM05D001111 ORTHO05D000939 2.6e-07 60.5 299 27.1
CAN.G4822.1 Capsicum annuum HOM05D001111 ORTHO05D000939 2.6e-07 60.5 299 27.1
CiPaw.11G026300 Carya illinoinensis HOM05D001111 ORTHO05D000939 2.6e-07 60.5 152 33.6
Potri.012G081000 Populus trichocarpa HOM05D001111 ORTHO05D000939 2.6e-07 60.5 167 31.7
Cpa.g.sc76.61 Carica papaya HOM05D001111 ORTHO05D000939 3.4e-07 60.1 156 30.1
Dinv35071 Davidia involucrata HOM05D005823 ORTHO05D007536 3.4e-07 60.1 324 25.9
Potri.009G102101 Populus trichocarpa HOM05D001111 ORTHO05D000939 3.4e-07 60.1 166 31.9
vmacro18253 Vaccinium macrocarpon HOM05D001111 ORTHO05D000939 3.4e-07 60.1 173 32.4
ECA232G3488 Erigeron canadensis HOM05D001111 ORTHO05D000939 4.5e-07 59.7 103 38.8
Oeu062980.1 Olea europaea HOM05D001111 ORTHO05D000939 4.5e-07 59.7 235 27.2
PGSC0003DMG400030091 Solanum tuberosum HOM05D001111 ORTHO05D000939 4.5e-07 59.7 283 25.4
CAN.G464.41 Capsicum annuum HOM05D001111 ORTHO05D000939 5.8e-07 59.3 312 26.6
Solyc03g114350.1 Solanum lycopersicum HOM05D001111 ORTHO05D000939 5.8e-07 59.3 332 26.2
SGA_v2.0_scaffold90G27938 Striga asiatica HOM05D001111 ORTHO05D000939 5.8e-07 59.3 150 32.7
Dinv33484 Davidia involucrata HOM05D001111 ORTHO05D000939 7.6e-07 58.9 308 27.6
ECA232G2259 Erigeron canadensis HOM05D001111 ORTHO05D000939 7.6e-07 58.9 103 38.8
PSO732G0803 Papaver somniferum HOM05D001111 ORTHO05D000939 7.6e-07 58.9 276 30.8
Sabra15G0101500 Salix brachista HOM05D001111 ORTHO05D000939 7.6e-07 58.9 166 31.3
CSS0041124 Camellia sinensis var. sinensis HOM05D001111 ORTHO05D000939 9.9e-07 58.5 152 30.3
Potri.015G076400 Populus trichocarpa HOM05D001111 ORTHO05D000939 9.9e-07 58.5 159 32.7
Sopen03g033450 Solanum pennellii HOM05D001111 ORTHO05D000939 9.9e-07 58.5 332 25.3
Oeu040830.1 Olea europaea HOM05D001111 ORTHO05D000939 1.3e-06 58.2 261 27.2
Ca_03154_v3 Cicer arietinum L. HOM05D001111 ORTHO05D000939 1.7e-06 57.8 90 43.3
CsaV3_3G042470 Cucumis sativus L. HOM05D001111 ORTHO05D000939 1.7e-06 57.8 141 34.8
Gorai.001G262600 Gossypium raimondii HOM05D001111 ORTHO05D000939 1.7e-06 57.8 285 28.4
Sabra12G0057900 Salix brachista HOM05D001111 ORTHO05D000939 1.7e-06 57.8 168 30.4
Atru.chr9.2477 Acer truncatum HOM05D001111 ORTHO05D000939 2.9e-06 57.0 158 30.4
ECA246G2993 Erigeron canadensis HOM05D001111 ORTHO05D000939 2.9e-06 57.0 303 25.7
Sc04g0001810 Simmondsia chinensis HOM05D001111 ORTHO05D000939 2.9e-06 57.0 152 27.6
Carub.0005s0643 Capsella rubella HOM05D001111 ORTHO05D000939 3.8e-06 56.6 285 23.9
Gorai.011G095800 Gossypium raimondii HOM05D001111 ORTHO05D000939 3.8e-06 56.6 314 24.2
Lsat_1_v5_gn_2_91940 Lactuca sativa HOM05D001111 ORTHO05D000939 3.8e-06 56.6 315 32.4
Sed0011422 Sechium edule HOM05D001111 ORTHO05D000939 3.8e-06 56.6 308 27.6
AT5G62770 Arabidopsis thaliana HOM05D001111 ORTHO05D000939 4.9e-06 56.2 153 30.1
Gohir.D10G087500 Gossypium hirsutum HOM05D001111 ORTHO05D000939 4.9e-06 56.2 314 24.2
PGSC0003DMG400030093 Solanum tuberosum HOM05D001111 ORTHO05D000939 4.9e-06 56.2 293 25.6
CDE06G0264 Ceratophyllum demersum HOM05D001111 ORTHO05D000939 6.4e-06 55.8 332 24.4
Dinv20655 Davidia involucrata HOM05D001111 ORTHO05D000939 6.4e-06 55.8 95 37.9
THA.LOC104823942 Tarenaya hassleriana HOM05D001111 ORTHO05D000939 6.4e-06 55.8 315 26.0
Actinidia33068 Actinidia chinensis HOM05D001111 ORTHO05D000939 8.4e-06 55.5 297 25.6
COL.COLO4_30037 Corchorus olitorius HOM05D001111 ORTHO05D000939 8.4e-06 55.5 147 29.3
Lsat_1_v5_gn_4_182601 Lactuca sativa HOM05D001111 ORTHO05D000939 8.4e-06 55.5 104 42.3
Lj3P1053T32 Lonicera japonica HOM05D001111 ORTHO05D000939 8.4e-06 55.5 180 31.1
Lj9P449T21 Lonicera japonica HOM05D001111 ORTHO05D000939 8.4e-06 55.5 322 26.4
MBI16_g32208_MAGBIO Magnolia biondii HOM05D001111 ORTHO05D000939 8.4e-06 55.5 330 23.3


User provided reference genes

Program Settings