Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g460910 Medicago truncatula HOM05D000112 ORTHO05D265141 4.2e-179 631.3 337 100.0
Medtr5g060770 Medicago truncatula HOM05D000112 ORTHO05D020873 3.0e-137 492.3 348 81.6
Medtr5g060780 Medicago truncatula HOM05D000112 ORTHO05D020873 7.6e-48 195.3 403 42.7
Medtr5g460920 Medicago truncatula HOM05D000112 ORTHO05D020873 1.7e-47 194.1 403 42.7
Medtr5g061890 Medicago truncatula HOM05D000112 ORTHO05D020873 7.9e-45 185.3 334 46.4
Medtr5g060630 Medicago truncatula HOM05D000112 ORTHO05D020873 5.1e-44 182.6 436 35.3
Medtr5g460740 Medicago truncatula HOM05D000112 ORTHO05D020873 5.1e-44 182.6 436 35.3
Medtr5g061220 Medicago truncatula HOM05D000112 ORTHO05D005280 6.1e-37 159.1 387 36.4
TPR.G30418 Trifolium pratense HOM05D000112 ORTHO05D005280 2.5e-30 137.1 395 33.7
Medtr1g058210 Medicago truncatula HOM05D000112 ORTHO05D005280 3.7e-26 123.2 286 35.3
Medtr5g062960 Medicago truncatula HOM05D000112 ORTHO05D020873 2.6e-24 117.1 149 49.7
Medtr5g082140 Medicago truncatula HOM05D000112 ORTHO05D015128 1.6e-21 107.8 369 28.7
Medtr5g040880 Medicago truncatula HOM05D000112 ORTHO05D005280 9.7e-19 98.6 373 29.0
Medtr2g024430 Medicago truncatula HOM05D000112 ORTHO05D015128 2.2e-18 97.4 365 29.3
COL.COLO4_21812 Corchorus olitorius HOM05D000112 ORTHO05D005280 4.1e-17 93.2 299 29.4
VMungo0647G1442 Vigna mungo HOM05D000112 ORTHO05D005280 7.0e-17 92.4 380 25.3
Medtr5g040740 Medicago truncatula HOM05D000112 ORTHO05D015128 1.7e-15 87.8 275 30.9
Gohir.D05G233800 Gossypium hirsutum HOM05D000112 ORTHO05D005280 6.5e-15 85.9 392 26.5
Gorai.009G241900 Gossypium raimondii HOM05D000112 ORTHO05D005280 6.5e-15 85.9 392 26.5
Phvul.008G168700 Phaseolus vulgaris HOM05D000112 ORTHO05D005280 6.5e-15 85.9 378 28.0
arahy.Tifrunner.gnm1.ann1.Q8HI94 Arachis hypogaea HOM05D000112 ORTHO05D005280 1.1e-14 85.1 384 25.5
Glyma.14G166500 Glycine max HOM05D000112 ORTHO05D005280 1.1e-14 85.1 396 26.8
Sabra05G0128800 Salix brachista HOM05D000112 ORTHO05D005280 1.9e-14 84.3 401 25.7
arahy.Tifrunner.gnm1.ann1.35XBQI Arachis hypogaea HOM05D000112 ORTHO05D005280 2.5e-14 84.0 384 25.3
arahy.Tifrunner.gnm1.ann1.ER65H4 Arachis hypogaea HOM05D000112 ORTHO05D005280 3.2e-14 83.6 406 27.1
Phvul.009G026200 Phaseolus vulgaris HOM05D000112 ORTHO05D005280 3.2e-14 83.6 391 25.8
Thecc.08G115900 Theobroma cacao HOM05D000112 ORTHO05D005280 3.2e-14 83.6 379 25.3
Potri.002G089900 Populus trichocarpa HOM05D000112 ORTHO05D005280 5.5e-14 82.8 394 24.4
Glyma.04G254200 Glycine max HOM05D000112 ORTHO05D005280 7.2e-14 82.4 398 26.1
Ciclev10000693m.g Citrus clementina HOM05D000112 ORTHO05D005280 9.4e-14 82.0 374 25.4
Prupe.1G507000 Prunus persica HOM05D000112 ORTHO05D005280 9.4e-14 82.0 417 25.4
Gohir.A05G231300 Gossypium hirsutum HOM05D000112 ORTHO05D005280 1.2e-13 81.6 392 26.8
Medtr2g006270 Medicago truncatula HOM05D000112 ORTHO05D005280 1.2e-13 81.6 360 27.8
GSVIVG01025691001 Vitis vinifera HOM05D000112 ORTHO05D001243 1.6e-13 81.3 369 27.9
Oeu039588.1 Olea europaea HOM05D000112 ORTHO05D005280 4.7e-13 79.7 379 26.4
Glyma.13G084700 Glycine max HOM05D000112 ORTHO05D005280 8.0e-13 79.0 393 26.2
Psat5g135840 Pisum sativum HOM05D000112 ORTHO05D005280 8.0e-13 79.0 395 24.3
Duzib116G0352 Durio zibethinus HOM05D000112 ORTHO05D005280 1.4e-12 78.2 399 25.8
Lj1g0018828 Lotus japonicus HOM05D000112 ORTHO05D005280 1.4e-12 78.2 393 26.2
Lalb_Chr23g0270791 Lupinus albus HOM05D000112 ORTHO05D005280 2.3e-12 77.4 146 34.9
CiPaw.05G230000 Carya illinoinensis HOM05D000112 ORTHO05D005280 3.0e-12 77.0 398 24.1
Duzib093G0658 Durio zibethinus HOM05D000112 ORTHO05D005280 5.2e-12 76.3 382 25.7
Haze_00537 Corylus avellana HOM05D000112 ORTHO05D005280 6.8e-12 75.9 392 25.3
arahy.Tifrunner.gnm1.ann1.W230FE Arachis hypogaea HOM05D000112 ORTHO05D005280 8.8e-12 75.5 408 25.7
arahy.Tifrunner.gnm1.ann1.UH60M2 Arachis hypogaea HOM05D000112 ORTHO05D005280 1.5e-11 74.7 406 26.4
QL12p035420 Quercus lobata HOM05D000112 ORTHO05D005280 2.6e-11 73.9 406 23.4
Lalb_Chr10g0102021 Lupinus albus HOM05D000112 ORTHO05D005280 3.4e-11 73.6 400 24.8
Medtr2g006380 Medicago truncatula HOM05D000112 ORTHO05D005280 3.4e-11 73.6 371 27.2
Medtr3g073420 Medicago truncatula HOM05D000112 ORTHO05D005280 7.5e-11 72.4 393 24.7
Cfa015951 Carpinus fangiana HOM05D000112 ORTHO05D005280 9.8e-11 72.0 397 24.7
Manes.18G072400 Manihot esculenta HOM05D000112 ORTHO05D005280 1.7e-10 71.2 395 24.3
MD00G1103900 Malus domestica HOM05D000112 ORTHO05D005280 2.2e-10 70.9 438 23.3
arahy.Tifrunner.gnm1.ann1.ZW7I7X Arachis hypogaea HOM05D000112 ORTHO05D005280 3.7e-10 70.1 407 25.8
Glyma.13G140600 Glycine max HOM05D000112 ORTHO05D001243 8.3e-10 68.9 420 25.7
Ca_25765_v3 Cicer arietinum L. HOM05D000112 ORTHO05D005280 1.1e-09 68.6 161 32.3
RcHm_v2.0_Chr7g0240691 Rosa chinensis HOM05D000112 ORTHO05D005280 1.1e-09 68.6 395 28.6
Atru.chr13.1308 Acer truncatum HOM05D000112 ORTHO05D005280 1.4e-09 68.2 382 25.4
Ah.16g109680 Amaranthus hybridus HOM05D000112 ORTHO05D005280 1.4e-09 68.2 391 24.3
Lj1C203T9 Lonicera japonica HOM05D000112 ORTHO05D001243 1.4e-09 68.2 413 22.8
Aqoxy1G01226 Aquilegia oxysepala HOM05D000112 ORTHO05D001243 2.4e-09 67.4 414 23.9
CSS0043555 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D001243 2.4e-09 67.4 411 24.3
Rhsim13G0094800 Rhododendron simsii HOM05D000112 ORTHO05D001243 3.1e-09 67.0 354 26.3
Ca_18525_v3 Cicer arietinum L. HOM05D000112 ORTHO05D005280 5.4e-09 66.2 118 37.3
Psat2g034920 Pisum sativum HOM05D000112 ORTHO05D015128 5.4e-09 66.2 384 25.5
TWI74G0435 Tripterygium wilfordii HOM05D000112 ORTHO05D001243 5.4e-09 66.2 413 25.7
Atru.chr8.1864 Acer truncatum HOM05D000112 ORTHO05D001243 7.0e-09 65.9 425 25.9
Duzib093G0491 Durio zibethinus HOM05D000112 ORTHO05D001243 7.0e-09 65.9 408 24.0
Medtr1g064430 Medicago truncatula HOM05D000112 ORTHO05D001243 7.0e-09 65.9 413 25.2
GSVIVG01008950001 Vitis vinifera HOM05D000112 ORTHO05D005280 7.0e-09 65.9 172 29.1
CiPaw.06G024100 Carya illinoinensis HOM05D000112 ORTHO05D005280 9.1e-09 65.5 403 23.3
Psat0s5865g0120 Pisum sativum HOM05D000112 ORTHO05D015128 9.1e-09 65.5 365 26.8
Hma1.2p1_0251F.1_g102580 Hydrangea macrophylla HOM05D000112 ORTHO05D005280 1.2e-08 65.1 206 29.1
CSS0042815 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D001243 2.0e-08 64.3 426 23.0
Psat5g048760 Pisum sativum HOM05D000112 ORTHO05D015128 2.0e-08 64.3 277 26.4
MBI09_g12158_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D005280 2.7e-08 63.9 224 28.6
TAR623G1145 Trochodendron aralioides HOM05D000112 ORTHO05D001243 2.7e-08 63.9 408 24.5
Gohir.A09G149200 Gossypium hirsutum HOM05D000112 ORTHO05D001243 3.5e-08 63.5 414 24.6
Gohir.D09G145100 Gossypium hirsutum HOM05D000112 ORTHO05D001243 3.5e-08 63.5 414 24.6
Gorai.006G166400 Gossypium raimondii HOM05D000112 ORTHO05D001243 3.5e-08 63.5 414 24.6
Psat0s2272g0080 Pisum sativum HOM05D000112 ORTHO05D015128 3.5e-08 63.5 276 26.1
Potri.008G039000 Populus trichocarpa HOM05D000112 ORTHO05D001243 3.5e-08 63.5 401 24.4
Sabra08G0026700 Salix brachista HOM05D000112 ORTHO05D001243 3.5e-08 63.5 401 24.7
Hund16818 Selenicereus undatus HOM05D000112 ORTHO05D005280 3.5e-08 63.5 163 30.1
Peaxi162Scf01011g00014 Petunia axillaris HOM05D000112 ORTHO05D001243 5.9e-08 62.8 412 24.0
VMungo1309G2631 Vigna mungo HOM05D000112 ORTHO05D005280 5.9e-08 62.8 208 28.8
DCAR_014788 Daucus carota HOM05D000112 ORTHO05D005280 7.7e-08 62.4 396 23.7
Actinidia02584 Actinidia chinensis HOM05D000112 ORTHO05D005280 1.0e-07 62.0 424 24.5
CiPaw.02G173700 Carya illinoinensis HOM05D000112 ORTHO05D001243 1.0e-07 62.0 405 23.0
Actinidia03494 Actinidia chinensis HOM05D000112 ORTHO05D005280 1.3e-07 61.6 214 27.6
Medtr5g062970 Medicago truncatula HOM05D000112 ORTHO05D017250 1.3e-07 61.6 105 41.0
Potri.010G223200 Populus trichocarpa HOM05D000112 ORTHO05D001243 1.3e-07 61.6 401 24.2
Medtr0041s0110 Medicago truncatula HOM05D000112 ORTHO05D001243 1.7e-07 61.2 154 31.8
Medtr7g101280 Medicago truncatula HOM05D000112 ORTHO05D001243 1.7e-07 61.2 154 31.8
Nn2g10814 Nelumbo nucifera HOM05D000112 ORTHO05D001243 1.7e-07 61.2 412 24.3
arahy.Tifrunner.gnm1.ann1.FTQ5UB Arachis hypogaea HOM05D000112 ORTHO05D005280 2.2e-07 60.8 110 36.4
Nitab4.5_0000051g0180 Nicotiana tabacum HOM05D000112 ORTHO05D005280 2.2e-07 60.8 400 22.8
Ciclev10011194m.g Citrus clementina HOM05D000112 ORTHO05D001243 2.9e-07 60.5 415 24.6
TPR.G32931 Trifolium pratense HOM05D000112 ORTHO05D005280 2.9e-07 60.5 147 29.3
Gorai.013G267100 Gossypium raimondii HOM05D000112 ORTHO05D001243 3.8e-07 60.1 373 24.9
Nitab4.5_0000101g0160 Nicotiana tabacum HOM05D000112 ORTHO05D001243 5.0e-07 59.7 319 27.3
Ah.15g092480 Amaranthus hybridus HOM05D000112 ORTHO05D001243 6.5e-07 59.3 158 35.4
arahy.Tifrunner.gnm1.ann1.SZV0B9 Arachis hypogaea HOM05D000112 ORTHO05D001243 6.5e-07 59.3 411 24.1
arahy.Tifrunner.gnm1.ann1.Y1X04L Arachis hypogaea HOM05D000112 ORTHO05D001243 6.5e-07 59.3 411 24.1
Gohir.D13G236400 Gossypium hirsutum HOM05D000112 ORTHO05D001243 6.5e-07 59.3 373 24.7
Psat0s2272g0160 Pisum sativum HOM05D000112 ORTHO05D015128 6.5e-07 59.3 293 25.9
arahy.Tifrunner.gnm1.ann1.Z4KUZI Arachis hypogaea HOM05D000112 ORTHO05D005280 8.5e-07 58.9 111 36.0
Nn1g08508 Nelumbo nucifera HOM05D000112 ORTHO05D005280 8.5e-07 58.9 210 32.4
Rhsim03G0119900 Rhododendron simsii HOM05D000112 ORTHO05D001243 8.5e-07 58.9 417 22.8
TAR628G1075 Trochodendron aralioides HOM05D000112 ORTHO05D005280 8.5e-07 58.9 156 32.1
Duzib128G1346 Durio zibethinus HOM05D000112 ORTHO05D001243 1.1e-06 58.5 413 24.2
Eucgr.F04380 Eucalyptus grandis HOM05D000112 ORTHO05D005280 1.1e-06 58.5 106 33.0
Glyma.19G181900 Glycine max HOM05D000112 ORTHO05D001243 1.1e-06 58.5 405 23.2
arahy.Tifrunner.gnm1.ann1.YSV1GS Arachis hypogaea HOM05D000112 ORTHO05D005280 1.5e-06 58.2 110 34.5
Glyma.10G053500 Glycine max HOM05D000112 ORTHO05D001243 1.5e-06 58.2 420 25.2
Dinv26727 Davidia involucrata HOM05D000112 ORTHO05D005280 1.9e-06 57.8 195 29.2
Prupe.6G236200 Prunus persica HOM05D000112 ORTHO05D001243 1.9e-06 57.8 414 23.2
Eucgr.K01240 Eucalyptus grandis HOM05D000112 ORTHO05D001243 2.5e-06 57.4 105 33.3
BcaC08g45448 Brassica carinata HOM05D000112 ORTHO05D005280 4.2e-06 56.6 118 36.4
PSO339G5265 Papaver somniferum HOM05D000112 ORTHO05D001243 4.2e-06 56.6 407 21.4
Phvul.007G149000 Phaseolus vulgaris HOM05D000112 ORTHO05D001243 4.2e-06 56.6 416 23.8
Sc26g0000370 Simmondsia chinensis HOM05D000112 ORTHO05D005280 4.2e-06 56.6 192 26.6
vmacro00786 Vaccinium macrocarpon HOM05D000112 ORTHO05D005280 4.2e-06 56.6 157 29.9
arahy.Tifrunner.gnm1.ann1.ZE2N9E Arachis hypogaea HOM05D000112 ORTHO05D001243 5.5e-06 56.2 409 24.0
MSTRG.18667 Avicennia marina HOM05D000112 ORTHO05D001243 5.5e-06 56.2 397 23.9
CARHR071330 Cardamine hirsuta HOM05D000112 ORTHO05D005280 5.5e-06 56.2 117 29.9
QL07p044343 Quercus lobata HOM05D000112 ORTHO05D001243 5.5e-06 56.2 414 23.9
C06p30760 Brassica napus HOM05D000112 ORTHO05D005280 7.2e-06 55.8 118 36.4
BolC6t38241H Brassica oleracea HOM05D000112 ORTHO05D005280 7.2e-06 55.8 118 36.4
CSS0007908 Camellia sinensis var. sinensis HOM05D000112 ORTHO05D001243 7.2e-06 55.8 412 22.1
Thhalv10018331m.g Eutrema salsugineum HOM05D000112 ORTHO05D005280 7.2e-06 55.8 108 30.6
MBI16_g07654_MAGBIO Magnolia biondii HOM05D000112 ORTHO05D005280 7.2e-06 55.8 149 29.5
Nitab4.5_0000071g0020 Nicotiana tabacum HOM05D000112 ORTHO05D001243 7.2e-06 55.8 145 33.1
Gohir.A05G103800 Gossypium hirsutum HOM05D000112 ORTHO05D001243 9.5e-06 55.5 106 31.1


User provided reference genes

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