Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 5.2e-202 707.6 379 100.0
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 2.3e-157 559.3 376 83.2
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 3.4e-153 545.4 382 80.9
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 3.5e-150 535.4 357 81.8
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 1.6e-147 526.6 370 79.5
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 1.3e-144 516.9 379 76.5
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.0e-141 507.3 377 76.9
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 9.6e-140 500.7 377 73.5
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 6.2e-139 498.0 323 84.2
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 3.5e-134 482.3 326 79.4
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 3.5e-134 482.3 340 78.2
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 3.5e-134 482.3 373 73.2
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 1.7e-133 479.9 337 78.3
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 1.7e-133 479.9 369 73.2
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 1.1e-132 477.2 337 77.7
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-132 477.2 366 72.7
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 1.5e-132 476.9 346 75.7
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.9e-132 476.5 336 78.9
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 3.3e-132 475.7 330 79.7
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 9.6e-132 474.2 360 75.0
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.6e-131 473.4 375 73.3
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 1.6e-131 473.4 331 80.1
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 2.8e-131 472.6 328 76.8
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 4.8e-131 471.9 343 77.0
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 4.8e-131 471.9 340 77.9
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 6.2e-131 471.5 328 78.4
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 6.2e-131 471.5 329 78.7
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 1.8e-130 469.9 333 77.5
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 1.8e-130 469.9 328 77.1
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 2.4e-130 469.5 334 78.1
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 3.1e-130 469.2 329 77.5
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 4.0e-130 468.8 329 77.5
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 4.0e-130 468.8 333 77.8
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 9.0e-130 467.6 329 78.4
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.2e-129 467.2 328 79.3
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 1.2e-129 467.2 328 78.4
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 2.0e-129 466.5 327 75.8
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 2.6e-129 466.1 328 77.1
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 4.5e-129 465.3 377 71.9
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.3e-128 463.8 375 70.7
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.2e-128 463.0 329 76.9
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 3.8e-128 462.2 379 69.4
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 6.4e-128 461.5 373 69.4
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.4e-128 461.5 329 76.3
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 6.4e-128 461.5 331 77.3
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 6.4e-128 461.5 334 76.0
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.1e-127 460.7 379 69.1
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.4e-127 460.3 344 73.8
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 3.2e-127 459.1 342 75.1
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.4e-127 458.4 331 77.6
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 9.3e-127 457.6 375 69.6
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 2.7e-126 456.1 379 68.3
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 4.6e-126 455.3 352 70.2
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 6.0e-126 454.9 345 73.3
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 7.9e-126 454.5 373 69.4
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 1.3e-125 453.8 345 73.0
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 1.3e-125 453.8 334 75.7
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 2.3e-125 453.0 365 71.2
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 2.3e-125 453.0 326 76.4
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 3.0e-125 452.6 330 75.5
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 3.0e-125 452.6 348 72.7
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 3.9e-125 452.2 325 75.7
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 8.7e-125 451.1 381 68.2
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 8.7e-125 451.1 379 67.8
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.5e-124 450.3 379 67.8
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 2.5e-124 449.5 321 78.2
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 2.5e-124 449.5 370 68.1
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 2.5e-124 449.5 327 74.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 4.3e-124 448.7 378 68.0
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 4.3e-124 448.7 378 68.0
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 4.3e-124 448.7 328 75.3
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 5.6e-124 448.4 382 67.3
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 5.6e-124 448.4 322 76.7
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 7.4e-124 448.0 367 68.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 7.4e-124 448.0 368 68.2
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-123 446.8 378 68.0
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 1.6e-123 446.8 375 67.5
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 1.6e-123 446.8 378 68.0
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-123 446.4 377 67.9
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 2.1e-123 446.4 378 67.5
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 3.7e-123 445.7 375 69.1
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 4.8e-123 445.3 382 67.0
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 4.8e-123 445.3 378 67.2
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 8.1e-123 444.5 375 67.5
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 8.1e-123 444.5 375 67.5
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 1.1e-122 444.1 375 66.7
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 1.4e-122 443.7 326 73.9
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 2.4e-122 443.0 380 67.4
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 2.4e-122 443.0 378 66.7
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 2.4e-122 443.0 369 67.8
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 3.1e-122 442.6 378 67.2
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 5.3e-122 441.8 377 66.0
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 9.0e-122 441.0 340 70.3
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 4.5e-121 438.7 342 71.1
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 9.9e-121 437.6 344 70.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.7e-120 436.8 336 69.9
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 2.9e-120 436.0 353 69.7
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 2.9e-120 436.0 344 70.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 6.4e-120 434.9 344 70.1
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 1.1e-119 434.1 367 68.7
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.9e-119 433.3 376 67.3
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 2.4e-119 433.0 370 66.5
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 4.2e-119 432.2 378 65.9
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 7.1e-119 431.4 353 69.1
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.6e-118 428.7 368 64.7
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.0e-117 426.0 315 74.9
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 1.5e-116 423.7 373 67.8
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 2.5e-116 422.9 369 60.7
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 4.3e-116 422.2 361 68.7
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 2.2e-112 409.8 304 73.7
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 8.4e-112 407.9 304 73.4
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 1.1e-111 407.5 304 73.4
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 4.2e-111 405.6 327 69.7
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 1.9e-108 396.7 379 61.5
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 4.8e-107 392.1 334 64.4
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 2.6e-105 386.3 367 59.4
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 1.8e-101 373.6 315 68.6
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 5.1e-101 372.1 369 61.8
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 3.1e-98 362.8 342 59.9
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 5.3e-98 362.1 374 57.5
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 6.9e-98 361.7 336 65.2
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.4e-95 354.0 303 67.3
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 7.9e-94 348.2 345 58.6
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 4.8e-91 339.0 328 60.4
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.9e-88 329.7 342 55.6
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 1.1e-87 327.8 243 75.3
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.4e-87 327.4 297 64.3
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 5.5e-87 325.5 243 74.1
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 7.2e-87 325.1 297 57.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 4.1e-82 309.3 203 75.9
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 6.5e-80 302.0 321 55.5
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 3.3e-76 289.7 324 53.7
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 4.4e-76 289.3 342 54.1
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 5.3e-74 282.3 346 52.3
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.8e-64 249.6 238 57.1
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 3.3e-55 219.9 208 60.6
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 9.2e-50 201.8 208 53.4
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 4.0e-45 186.4 165 58.2
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 8.3e-43 178.7 128 73.4
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 1.2e-38 164.9 149 61.7
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 1.3e-35 154.8 101 75.2
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 2.2e-35 154.1 164 56.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 2.7e-33 147.1 144 56.2
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 1.1e-29 135.2 91 71.4
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 1.8e-29 134.4 90 74.4
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 9.2e-26 122.1 128 53.9
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-25 120.6 78 76.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.2e-22 111.7 285 33.0
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 2.0e-20 104.4 119 49.6
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 3.4e-20 103.6 105 52.4
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 8.4e-19 99.0 109 51.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.6e-17 94.7 133 43.6
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-15 88.6 65 69.2
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 2.5e-15 87.4 275 33.5
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 2.1e-14 84.3 67 64.2
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 5.3e-13 79.7 140 41.4
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 7.9e-09 65.9 46 69.6
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-08 65.1 46 69.6
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-08 65.1 79 51.9
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-08 65.1 79 51.9
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 1.8e-08 64.7 56 58.9
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-08 64.3 43 69.8
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.1e-07 62.0 63 55.6
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.1e-07 62.0 47 61.7
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.5e-07 61.6 42 71.4
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.5e-07 61.6 49 57.1
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-07 61.2 46 67.4
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 5.6e-07 59.7 163 34.4
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.3e-06 58.5 46 60.9
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 8.1e-06 55.8 46 60.9


User provided reference genes

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