Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 4.8e-88 327.8 165 100.0
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 2.2e-72 275.8 163 84.7
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 2.3e-69 265.8 164 81.7
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 2.3e-69 265.8 161 82.0
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 7.3e-68 260.8 161 79.5
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 9.5e-68 260.4 151 81.5
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 1.9e-60 236.1 150 80.0
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 2.1e-59 232.6 153 75.2
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 3.6e-59 231.9 146 77.4
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 4.0e-58 228.4 161 72.0
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 5.2e-58 228.0 169 65.1
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 5.2e-58 228.0 168 64.9
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 3.4e-57 225.3 162 67.3
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 3.4e-57 225.3 155 67.7
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 5.8e-57 224.6 161 70.8
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 5.8e-57 224.6 161 66.5
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 9.8e-57 223.8 162 67.3
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 9.8e-57 223.8 162 66.7
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 1.7e-56 223.0 152 70.4
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 4.9e-56 221.5 162 65.4
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 4.9e-56 221.5 162 66.7
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.9e-55 219.5 154 68.8
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 3.2e-55 218.8 161 65.8
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 3.2e-55 218.8 154 68.8
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 2.7e-54 215.7 154 66.9
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 3.5e-54 215.3 148 68.9
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 1.0e-53 213.8 133 79.7
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 1.3e-53 213.4 147 69.4
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.3e-53 212.6 154 68.8
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 8.6e-53 210.7 164 65.2
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 1.5e-52 209.9 164 64.0
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 1.5e-52 209.9 150 67.3
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 7.3e-52 207.6 147 67.3
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 3.6e-51 205.3 163 65.6
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.7e-51 204.9 154 64.9
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 6.2e-51 204.5 144 68.1
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 1.4e-50 203.4 152 64.5
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 1.8e-50 203.0 152 67.1
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 2.3e-50 202.6 149 65.1
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 5.2e-50 201.4 145 63.4
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.2e-49 200.3 154 62.3
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.2e-49 200.3 154 62.3
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 1.2e-49 200.3 154 62.3
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 1.5e-49 199.9 148 64.9
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 2.6e-49 199.1 162 61.1
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 3.4e-49 198.7 155 60.6
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 3.4e-49 198.7 152 63.8
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 3.4e-49 198.7 146 63.0
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 4.4e-49 198.4 147 68.7
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 5.8e-49 198.0 234 47.4
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 9.8e-49 197.2 134 66.4
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 9.8e-49 197.2 152 63.2
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 1.3e-48 196.8 153 62.1
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 2.9e-48 195.7 138 67.4
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 4.9e-48 194.9 160 59.4
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 2.1e-46 189.5 144 62.5
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 4.6e-46 188.3 147 59.9
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 7.8e-46 187.6 148 58.8
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 7.8e-46 187.6 147 59.2
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 1.0e-45 187.2 146 59.6
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 1.0e-45 187.2 147 58.5
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 1.0e-45 187.2 147 58.5
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 1.3e-45 186.8 203 50.7
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 1.7e-45 186.4 146 58.2
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 1.7e-45 186.4 150 58.0
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 2.3e-45 186.0 145 61.4
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 1.5e-44 183.3 143 58.7
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 1.5e-44 183.3 131 67.2
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 5.6e-44 181.4 150 55.3
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 6.2e-43 177.9 137 60.6
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 6.2e-43 177.9 136 60.3
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 2.3e-42 176.0 146 57.5
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 1.5e-41 173.3 134 59.0
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 2.0e-41 172.9 134 59.0
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 1.7e-40 169.9 141 54.6
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 3.8e-40 168.7 149 55.0
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 6.4e-40 167.9 134 56.0
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 1.4e-39 166.8 134 59.0
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 1.9e-39 166.4 141 53.9
AUR62044292 Chenopodium quinoa HOM05D007186 ORTHO05D008970 7.1e-39 164.5 147 54.4
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 1.0e-37 160.6 125 61.6
BcaC01g03187 Brassica carinata HOM05D007186 ORTHO05D008970 2.3e-37 159.5 125 58.4
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 3.6e-35 152.1 159 48.4
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 4.7e-35 151.8 159 52.2
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 5.2e-34 148.3 149 50.3
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 5.2e-34 148.3 152 52.6
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 5.2e-34 148.3 133 54.9
Oeu040479.1 Olea europaea HOM05D007186 ORTHO05D008970 6.9e-34 147.9 110 64.5
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 6.9e-34 147.9 127 58.3
DCAR_032166 Daucus carota HOM05D000693 ORTHO05D008970 4.9e-32 141.7 100 68.0
arahy.Tifrunner.gnm1.ann1.I316DY Arachis hypogaea HOM05D007186 ORTHO05D008970 2.1e-30 136.3 82 74.4
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 3.3e-28 129.0 122 56.6
arahy.Tifrunner.gnm1.ann1.ZIY68Y Arachis hypogaea HOM05D007186 ORTHO05D008970 4.3e-28 128.6 79 75.9
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.6e-27 126.7 81 76.5
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 8.1e-27 124.4 87 72.4
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 1.4e-26 123.6 91 69.2
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 2.0e-25 119.8 80 75.0
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 3.4e-25 119.0 93 67.7
Sc20g0003870 Simmondsia chinensis HOM05D007186 ORTHO05D008970 1.7e-24 116.7 91 53.8
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 6.4e-24 114.8 82 72.0
arahy.Tifrunner.gnm1.ann1.5R4F72 Arachis hypogaea HOM05D007186 ORTHO05D008970 5.4e-23 111.7 115 53.0
SMO364G0535 Selaginella moellendorffii HOM05D007186 ORTHO05D008970 5.1e-21 105.1 134 45.5
Pp3c15_5880 Physcomitrium patens HOM05D007186 ORTHO05D008970 8.7e-21 104.4 137 41.6
Nn1g07413 Nelumbo nucifera HOM05D007186 ORTHO05D008970 1.6e-19 100.1 70 60.0
Mapoly0123s0026 Marchantia polymorpha HOM05D007186 ORTHO05D008970 4.8e-19 98.6 144 38.9
Eucgr.K00669 Eucalyptus grandis HOM05D007186 ORTHO05D008970 1.8e-18 96.7 74 56.8
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 3.1e-18 95.9 68 70.6
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 5.1e-13 78.6 44 84.1
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 1.1e-10 70.9 44 72.7
Thhalv10002943m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 2.5e-07 59.7 56 44.6
MD17G1110300 Malus domestica HOM05D007186 ORTHO05D008970 3.2e-07 59.3 42 73.8


User provided reference genes

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