Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 5.0e-293 1010.4 511 100.0
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 7.5e-265 916.8 511 91.6
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 6.8e-258 893.6 512 89.8
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 2.6e-257 891.7 511 89.8
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 7.9e-222 773.9 513 80.1
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 7.9e-222 773.9 520 79.6
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 2.5e-220 768.8 513 80.3
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.3e-219 766.5 513 79.7
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 5.3e-218 761.1 525 77.0
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 9.0e-218 760.4 515 78.6
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 2.9e-216 755.4 518 76.6
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 3.1e-210 735.3 511 76.3
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.8e-205 719.5 515 72.6
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 6.7e-205 717.6 514 73.0
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 8.8e-205 717.2 516 72.1
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.5e-204 716.5 516 72.1
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.4e-204 714.9 517 72.1
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 3.7e-203 711.8 517 72.5
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.2e-198 696.8 519 70.9
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 6.1e-198 694.5 521 72.0
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.8e-197 693.0 518 71.2
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.9e-197 691.8 520 71.0
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 3.9e-197 691.8 516 71.7
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.0e-196 689.5 516 71.9
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 9.7e-196 687.2 517 72.9
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 2.8e-195 685.6 518 70.7
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 5.9e-193 677.9 516 68.8
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 7.7e-193 677.6 517 69.6
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.7e-192 676.4 519 70.5
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 5.0e-192 674.9 513 69.4
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.1e-191 673.7 521 69.5
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.5e-191 672.5 520 68.8
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 2.5e-191 672.5 521 69.5
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.2e-191 672.2 521 68.9
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.2e-190 670.2 516 71.7
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 6.1e-190 667.9 516 69.8
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 8.0e-190 667.5 520 67.1
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 1.2e-188 663.7 507 68.0
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.5e-188 663.3 513 70.2
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 3.3e-188 662.1 517 69.6
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 3.3e-188 662.1 522 67.8
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.7e-187 659.8 514 68.7
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 4.5e-185 651.7 521 68.5
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 8.5e-184 647.5 509 66.8
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 1.1e-183 647.1 515 67.4
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.9e-183 646.4 515 68.2
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 5.5e-183 644.8 509 66.6
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 5.5e-183 644.8 517 66.2
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 2.1e-182 642.9 521 68.5
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 2.7e-182 642.5 512 68.2
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 4.7e-182 641.7 522 67.6
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.0e-181 640.6 518 67.8
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 1.4e-181 640.2 516 67.2
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.4e-181 640.2 529 65.4
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.8e-181 639.8 518 66.8
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 3.0e-181 639.0 509 66.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 5.2e-181 638.3 528 67.4
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.2e-180 637.1 518 66.6
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.5e-180 636.7 514 65.8
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.6e-180 636.0 537 65.5
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 3.4e-180 635.6 511 66.5
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 7.5e-180 634.4 518 67.4
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-179 633.6 518 67.4
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.8e-179 631.7 518 67.2
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.1e-178 630.6 516 67.6
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.4e-178 629.4 517 67.9
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 3.1e-178 629.0 516 65.5
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 3.5e-177 625.5 517 63.4
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 4.5e-177 625.2 515 65.6
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.3e-176 623.6 516 66.3
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.2e-176 622.9 524 66.2
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 2.9e-176 622.5 519 64.5
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.1e-175 620.5 527 66.6
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 2.5e-175 619.4 515 65.2
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.2e-175 619.0 527 63.6
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 7.2e-175 617.8 509 65.4
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.6e-174 616.7 509 65.2
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 2.1e-174 616.3 511 65.4
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 2.1e-174 616.3 523 64.4
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.0e-173 612.5 514 65.2
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.0e-173 612.5 520 64.2
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 4.0e-173 612.1 509 66.4
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 2.6e-172 609.4 511 65.8
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 4.4e-172 608.6 513 66.7
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.7e-171 606.7 509 66.0
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 2.2e-171 606.3 527 63.9
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.8e-170 603.2 530 62.8
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.0e-169 599.7 507 65.3
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 4.5e-169 598.6 507 65.1
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.3e-168 596.3 521 63.0
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 1.4e-165 587.0 527 61.1
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.4e-165 587.0 533 61.5
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 3.0e-165 585.9 518 63.5
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.0e-165 585.5 467 66.2
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 2.6e-164 582.8 531 61.2
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 3.4e-164 582.4 512 64.5
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.0e-160 570.9 470 64.7
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.1e-159 567.4 533 59.7
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 2.5e-159 566.2 520 59.4
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 9.5e-159 564.3 520 60.4
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.5e-156 557.0 533 58.9
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 7.8e-153 544.7 510 59.6
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 2.3e-152 543.1 461 63.6
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 2.6e-148 529.6 516 60.9
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 6.6e-144 515.0 523 56.4
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.4e-141 507.3 520 56.2
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.1e-141 506.1 522 56.1
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 5.8e-140 501.9 522 55.7
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 2.3e-136 490.0 533 53.1
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 3.9e-128 462.6 482 55.4
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 2.7e-121 439.9 531 51.6
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.8e-120 437.2 515 51.8
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.6e-118 430.6 500 54.4
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 3.1e-117 426.4 544 49.4
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.3e-112 410.2 307 68.1
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 7.1e-106 388.7 514 46.5
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.9e-95 354.0 295 65.8
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 9.1e-93 345.1 513 45.8
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 4.1e-85 319.7 575 39.1
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 3.4e-63 246.9 283 53.4
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 9.5e-58 228.8 342 41.5
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 2.6e-55 220.7 201 63.7
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 5.9e-52 209.5 286 45.1
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 4.7e-25 120.2 99 66.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.1e-24 119.0 487 27.1
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.2e-24 116.7 83 69.9
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 3.8e-22 110.5 502 27.9
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.8e-16 91.7 106 55.7
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 6.4e-14 83.2 74 58.1
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.4e-13 82.0 54 68.5
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 4.2e-13 80.5 63 63.5
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.0e-11 74.3 171 33.9
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 8.1e-09 66.2 48 77.1


User provided reference genes

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