Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 2.6e-275 951.4 481 100.0
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 3.4e-235 818.1 471 86.4
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 4.5e-227 791.2 458 87.1
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 2.7e-200 702.2 488 75.4
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 5.9e-195 684.5 391 85.4
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.2e-179 633.6 468 69.9
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 9.9e-166 587.4 471 65.4
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 1.5e-158 563.5 461 63.6
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 9.9e-158 560.8 461 62.3
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 8.4e-157 557.8 455 63.3
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 2.0e-150 536.6 496 59.9
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 9.6e-137 491.1 353 70.8
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 1.2e-118 431.0 431 54.1
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 3.4e-118 429.5 434 54.6
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 5.9e-118 428.7 444 53.2
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 1.7e-117 427.2 432 53.7
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 3.2e-116 422.9 453 53.2
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 4.6e-115 419.1 438 54.1
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 4.6e-115 419.1 456 50.9
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 6.1e-115 418.7 439 52.4
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 6.1e-115 418.7 439 52.2
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.0e-114 417.9 448 51.3
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 1.0e-114 417.9 443 51.7
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 8.8e-114 414.8 455 50.8
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.1e-113 414.5 456 50.2
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.5e-113 414.1 456 50.7
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 7.4e-113 411.8 436 52.1
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 9.7e-113 411.4 433 52.4
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 1.3e-112 411.0 449 50.8
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 3.7e-112 409.5 433 52.4
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 3.1e-111 406.4 434 50.7
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 4.1e-111 406.0 449 50.3
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 9.1e-111 404.8 434 50.7
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.0e-109 401.4 434 50.2
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.7e-109 400.6 431 51.0
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 2.9e-109 399.8 456 48.9
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 2.5e-108 396.7 424 50.9
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 3.2e-108 396.4 431 51.3
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.5e-108 395.6 434 50.0
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 1.2e-107 394.4 454 49.6
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 3.6e-107 392.9 441 49.7
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 3.6e-107 392.9 438 50.7
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 2.3e-106 390.2 459 48.1
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 3.9e-106 389.4 442 50.9
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 5.1e-106 389.0 439 47.6
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 8.8e-106 388.3 435 48.3
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 1.1e-105 387.9 454 50.0
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 3.3e-105 386.3 433 48.7
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 1.7e-104 384.0 435 47.6
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 4.1e-103 379.4 441 48.5
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 4.1e-103 379.4 450 46.0
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 2.6e-102 376.7 437 49.0
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 4.5e-102 375.9 474 47.0
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 7.7e-102 375.2 438 47.7
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 6.5e-101 372.1 395 51.1
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 1.1e-100 371.3 437 47.1
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 1.9e-100 370.5 384 51.6
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 3.2e-100 369.8 456 47.4
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.2e-99 367.9 423 48.5
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 8.0e-99 365.2 441 46.5
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 3.9e-98 362.8 450 45.8
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 1.1e-97 361.3 428 48.4
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 2.0e-97 360.5 440 45.9
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 2.0e-97 360.5 440 46.6
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.0e-97 360.5 426 47.7
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.4e-95 354.4 438 47.0
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.1e-95 353.2 389 49.6
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 4.1e-95 352.8 394 47.2
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 7.0e-95 352.1 445 47.4
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 9.1e-95 351.7 440 45.7
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 1.2e-94 351.3 445 47.0
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 4.5e-94 349.4 435 46.2
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 5.9e-94 349.0 438 46.6
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 1.3e-93 347.8 393 48.1
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 2.2e-93 347.1 474 44.1
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 6.5e-93 345.5 466 44.6
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 6.5e-93 345.5 392 48.0
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 4.2e-92 342.8 469 44.1
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 4.2e-92 342.8 469 44.1
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 3.6e-91 339.7 469 43.9
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 4.7e-91 339.3 469 43.9
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 4.7e-91 339.3 469 43.9
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 6.1e-91 339.0 469 43.7
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 1.4e-90 337.8 482 42.1
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.8e-90 337.4 435 43.4
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 3.0e-90 336.7 441 44.0
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 6.8e-90 335.5 452 44.0
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 9.8e-89 331.6 440 45.0
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 1.3e-88 331.3 382 46.3
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 3.7e-88 329.7 460 42.8
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 4.1e-87 326.2 465 43.7
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 5.9e-86 322.4 392 45.2
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 3.8e-85 319.7 405 43.2
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.5e-84 317.8 387 43.9
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 9.4e-84 315.1 512 38.9
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 1.2e-83 314.7 462 42.6
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 3.6e-83 313.2 390 44.4
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 8.0e-83 312.0 303 56.4
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 4.0e-82 309.7 401 43.4
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 1.5e-81 307.8 294 54.1
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 2.2e-80 303.9 390 43.3
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 2.4e-79 300.4 389 42.7
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 5.4e-79 299.3 389 43.4
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 7.0e-79 298.9 324 49.7
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 5.6e-76 289.3 394 43.9
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 7.2e-76 288.9 416 41.1
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 1.6e-75 287.7 436 41.7
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 5.7e-73 279.3 442 40.7
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 4.9e-72 276.2 442 40.5
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 1.8e-71 274.2 448 39.5
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 2.0e-70 270.8 429 37.8
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 5.9e-70 269.2 360 42.5
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.4e-66 258.1 445 38.2
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.0e-66 256.5 369 41.2
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.6e-65 253.8 463 36.1
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 9.8e-65 251.9 455 37.1
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.1e-63 248.4 390 41.0
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 6.6e-61 239.2 389 38.8
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 2.0e-57 227.6 418 38.3
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.6e-51 208.0 279 43.4
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 5.2e-50 203.0 439 32.6
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 1.5e-49 201.4 390 34.1
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.9e-48 196.4 288 39.9
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 1.7e-37 161.4 296 36.8
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 1.5e-17 95.1 147 40.1
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 8.7e-13 79.3 136 36.0
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.6e-11 75.1 104 43.3
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 3.4e-09 67.4 50 74.0
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 1.2e-06 58.9 52 67.3
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 4.6e-06 57.0 46 71.7


User provided reference genes

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