Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g096830 Medicago truncatula HOM05D004538 ORTHO05D006068 5.7e-264 913.7 460 100.0
Psat2g005560 Pisum sativum HOM05D004538 ORTHO05D006068 3.2e-238 828.2 463 91.4
TPR.G1264 Trifolium pratense HOM05D004538 ORTHO05D006068 2.8e-234 815.1 462 90.5
Medtr3g095790 Medicago truncatula HOM05D004538 ORTHO05D006068 3.9e-228 794.7 464 88.6
LjContig00081g0007081 Lotus japonicus HOM05D004538 ORTHO05D006068 2.1e-221 772.3 461 86.1
Lj5g0024294 Lotus japonicus HOM05D004538 ORTHO05D006068 2.3e-220 768.8 461 85.7
Glyma.14G010400 Glycine max HOM05D004538 ORTHO05D006068 2.5e-211 738.8 462 83.1
VMungo0647G1241 Vigna mungo HOM05D004538 ORTHO05D006068 2.5e-211 738.8 461 81.8
Phvul.008G282700 Phaseolus vulgaris HOM05D004538 ORTHO05D006068 3.3e-211 738.4 464 81.0
Ca_06424_v3 Cicer arietinum L. HOM05D000527 ORTHO05D000559 1.1e-209 733.4 390 94.9
Lalb_Chr04g0247681 Lupinus albus HOM05D004538 ORTHO05D006068 1.3e-202 709.9 466 79.4
Glyma.02G303400 Glycine max HOM05D004538 ORTHO05D006068 1.6e-197 693.0 387 89.7
arahy.Tifrunner.gnm1.ann1.0Z7D2W Arachis hypogaea HOM05D004538 ORTHO05D006068 3.9e-196 688.3 460 75.0
arahy.Tifrunner.gnm1.ann1.01YFCZ Arachis hypogaea HOM05D004538 ORTHO05D006068 1.9e-195 686.0 460 74.8
Thecc.07G004000 Theobroma cacao HOM05D004538 ORTHO05D006068 1.5e-192 676.4 461 74.2
Haze_03267 Corylus avellana HOM05D004538 ORTHO05D006068 1.0e-191 673.7 461 76.8
CsaV3_4G008160 Cucumis sativus L. HOM05D004538 ORTHO05D006068 2.2e-191 672.5 454 75.6
Duzib268G1486 Durio zibethinus HOM05D004538 ORTHO05D006068 2.2e-191 672.5 459 74.9
Prupe.8G086500 Prunus persica HOM05D004538 ORTHO05D006068 1.9e-190 669.5 458 75.3
Sed0002758 Sechium edule HOM05D004538 ORTHO05D006068 9.4e-190 667.2 461 74.0
Eucgr.F02006 Eucalyptus grandis HOM05D004538 ORTHO05D006068 2.1e-189 666.0 459 75.8
Gohir.D13G132900 Gossypium hirsutum HOM05D004538 ORTHO05D006068 3.6e-189 665.2 460 73.7
CiPaw.15G107100 Carya illinoinensis HOM05D004538 ORTHO05D006068 4.6e-189 664.8 398 82.7
ClCG07G010160 Citrullus lanatus HOM05D004538 ORTHO05D006068 6.1e-189 664.5 464 73.3
MELO3C016120.2 Cucumis melo HOM05D004538 ORTHO05D006068 1.4e-188 663.3 465 73.3
PGR083G1782 Punica granatum HOM05D004538 ORTHO05D006068 1.8e-188 662.9 413 81.1
Prupe.4G230100 Prunus persica HOM05D004538 ORTHO05D006068 3.0e-188 662.1 458 74.2
Gorai.013G149100 Gossypium raimondii HOM05D004538 ORTHO05D006068 3.9e-188 661.8 460 73.3
QL09p046970 Quercus lobata HOM05D004538 ORTHO05D006068 6.7e-188 661.0 437 77.6
Gohir.A13G129700 Gossypium hirsutum HOM05D004538 ORTHO05D006068 1.5e-187 659.8 461 73.3
BcaB08g35975 Brassica carinata HOM05D004538 ORTHO05D006068 5.7e-187 657.9 459 72.5
AT5G56090 Arabidopsis thaliana HOM05D004538 ORTHO05D006068 7.4e-187 657.5 456 74.1
Ciclev10008262m.g Citrus clementina HOM05D004538 ORTHO05D006068 9.7e-187 657.1 396 81.3
Sp6g17940 Schrenkiella parvula HOM05D004538 ORTHO05D006068 9.7e-187 657.1 458 72.5
BolC9t57574H Brassica oleracea HOM05D004538 ORTHO05D006068 6.3e-186 654.4 455 72.3
GSVIVG01014777001 Vitis vinifera HOM05D004538 ORTHO05D006068 1.4e-185 653.3 460 74.1
BraA10t43427Z Brassica rapa HOM05D004538 ORTHO05D006068 1.8e-185 652.9 456 72.6
Aa31LG3G12000 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.1e-185 652.1 457 73.3
A10p13290 Brassica napus HOM05D002718 ORTHO05D003269 3.1e-185 652.1 456 72.6
CARHR269470 Cardamine hirsuta HOM05D004538 ORTHO05D006068 3.1e-185 652.1 458 73.4
Thhalv10013497m.g Eutrema salsugineum HOM05D004538 ORTHO05D006068 4.1e-185 651.7 458 72.9
AL2G22990 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.9e-185 651.0 457 73.7
AL8G31670 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 9.1e-185 650.6 459 73.0
BcaC04g20158 Brassica carinata HOM05D004538 ORTHO05D006068 9.1e-185 650.6 455 71.9
CSS0012792 Camellia sinensis var. sinensis HOM05D004538 ORTHO05D006068 9.1e-185 650.6 404 80.9
Carub.0008s1641 Capsella rubella HOM05D004538 ORTHO05D006068 1.2e-184 650.2 458 73.4
CANSAT11G1513 Cannabis sativa HOM05D004538 ORTHO05D006068 2.6e-184 649.0 431 75.9
Lj8A182T63 Lonicera japonica HOM05D004538 ORTHO05D006068 3.4e-184 648.7 397 81.1
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 4.5e-184 648.3 457 73.5
TWI39G0910 Tripterygium wilfordii HOM05D004538 ORTHO05D006068 5.9e-184 647.9 420 78.1
FvH4_3g41910 Fragaria vesca HOM05D004538 ORTHO05D006068 1.3e-183 646.7 462 72.7
FAN21G0976 Fragaria x ananassa HOM05D004538 ORTHO05D006068 2.2e-183 646.0 458 72.3
C09p47190 Brassica napus HOM05D002718 ORTHO05D003269 2.9e-183 645.6 412 77.7
THA.LOC104811692 Tarenaya hassleriana HOM05D004538 ORTHO05D006068 3.8e-183 645.2 454 72.2
RcHm_v2.0_Chr6g0267391 Rosa chinensis HOM05D004538 ORTHO05D006068 5.0e-183 644.8 458 73.1
COL.COLO4_07768 Corchorus olitorius HOM05D004538 ORTHO05D006068 1.4e-182 643.3 381 82.4
Cc02_g29800 Coffea canephora HOM05D004538 ORTHO05D006068 2.5e-182 642.5 404 79.7
FAN25G0511 Fragaria x ananassa HOM05D004538 ORTHO05D006068 3.2e-182 642.1 458 71.8
Hund25422 Selenicereus undatus HOM05D004538 ORTHO05D006068 4.2e-182 641.7 426 75.4
Hma1.2p1_0321F.1_g124200 Hydrangea macrophylla HOM05D004538 ORTHO05D006068 5.5e-182 641.3 457 73.1
Actinidia00835 Actinidia chinensis HOM05D004538 ORTHO05D006068 7.2e-182 641.0 397 80.6
HanXRQChr04g0114571 Helianthus annuus HOM05D004538 ORTHO05D006068 9.4e-182 640.6 398 78.4
BcaC04g20151 Brassica carinata HOM05D004538 ORTHO05D006068 1.2e-181 640.2 463 71.1
Lsat_1_v5_gn_7_116401 Lactuca sativa HOM05D004538 ORTHO05D006068 1.2e-181 640.2 405 78.0
Potri.011G166800 Populus trichocarpa HOM05D004538 ORTHO05D006068 1.2e-181 640.2 466 72.3
FAN11G3993 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.6e-181 639.8 458 71.6
Peaxi162Scf00173g00324 Petunia axillaris HOM05D004538 ORTHO05D006068 3.6e-181 638.6 458 73.6
RcHm_v2.0_Chr5g0075121 Rosa chinensis HOM05D004538 ORTHO05D006068 4.7e-181 638.3 421 75.8
Cpa.g.sc97.88 Carica papaya HOM05D004538 ORTHO05D006068 1.0e-180 637.1 387 81.7
Nitab4.5_0005622g0040 Nicotiana tabacum HOM05D004538 ORTHO05D006068 1.0e-180 637.1 447 74.0
Sabra11G0139500 Salix brachista HOM05D004538 ORTHO05D006068 1.8e-180 636.3 466 71.5
Cc02_g09720 Coffea canephora HOM05D004538 ORTHO05D006068 2.3e-180 636.0 404 78.7
Sopen11g002920 Solanum pennellii HOM05D004538 ORTHO05D006068 3.9e-180 635.2 411 78.8
ECA236G0032 Erigeron canadensis HOM05D004538 ORTHO05D006068 8.8e-180 634.0 383 80.9
HanXRQChr11g0334561 Helianthus annuus HOM05D004538 ORTHO05D006068 8.8e-180 634.0 410 76.1
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 1.1e-179 633.6 453 72.0
BcaC04g20148 Brassica carinata HOM05D004538 ORTHO05D006068 2.0e-179 632.9 373 82.6
unitig_899.g14715 Utricularia gibba HOM05D004538 ORTHO05D006068 2.6e-179 632.5 388 80.7
Solyc11g007000.2 Solanum lycopersicum HOM05D004538 ORTHO05D006068 3.3e-179 632.1 393 80.9
CAN.G645.5 Capsicum annuum HOM05D004538 ORTHO05D006068 5.7e-179 631.3 393 80.4
PGSC0003DMG400023975 Solanum tuberosum HOM05D004538 ORTHO05D006068 1.7e-178 629.8 425 76.7
Hund19415 Selenicereus undatus HOM05D004538 ORTHO05D006068 2.8e-178 629.0 426 74.6
Sc07g0002240 Simmondsia chinensis HOM05D004538 ORTHO05D006068 2.8e-178 629.0 455 71.4
Ah.12g065010 Amaranthus hybridus HOM05D004538 ORTHO05D006068 3.7e-178 628.6 454 70.5
EL10Ac2g02751 Beta vulgaris HOM05D004538 ORTHO05D006068 6.3e-178 627.9 428 73.6
C09p47240 Brassica napus HOM05D004538 ORTHO05D006068 6.3e-178 627.9 380 80.8
AUR62001067 Chenopodium quinoa HOM05D004538 ORTHO05D006068 8.2e-178 627.5 427 73.8
SGA_v2.0_scaffold62G21339 Striga asiatica HOM05D004538 ORTHO05D006068 8.2e-178 627.5 394 78.9
Aqoxy7G01640 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.1e-177 627.1 453 69.3
Dinv31347 Davidia involucrata HOM05D004538 ORTHO05D006068 2.4e-177 625.9 393 78.6
Lj1C898T12 Lonicera japonica HOM05D004538 ORTHO05D006068 2.0e-176 622.9 374 81.6
Nn1g08442 Nelumbo nucifera HOM05D004538 ORTHO05D006068 2.6e-176 622.5 462 68.2
Oeu036424.1 Olea europaea HOM05D004538 ORTHO05D006068 2.6e-176 622.5 388 80.2
SalBow6G4226 Salvia bowleyana HOM05D004538 ORTHO05D006068 1.3e-175 620.2 389 79.7
DCAR_013768 Daucus carota HOM05D004538 ORTHO05D006068 8.5e-175 617.5 391 77.7
Migut.F00884 Erythranthe guttata HOM05D004538 ORTHO05D006068 1.5e-174 616.7 393 78.1
PSO675G3744 Papaver somniferum HOM05D004538 ORTHO05D006068 7.2e-174 614.4 435 69.9
PSO063G5767 Papaver somniferum HOM05D004538 ORTHO05D006068 9.4e-174 614.0 452 69.2
PSO541G6331 Papaver somniferum HOM05D004538 ORTHO05D006068 2.7e-173 612.5 439 69.5
MBI14_g30901_MAGBIO Magnolia biondii HOM05D004538 ORTHO05D006068 1.0e-172 610.5 474 67.7
MD02G1271400 Malus domestica HOM05D004538 ORTHO05D006068 1.1e-169 600.5 411 74.5
vmacro09607 Vaccinium macrocarpon HOM05D004538 ORTHO05D006068 2.4e-169 599.4 463 67.4
Os08g0496000 Oryza sativa ssp. japonica HOM05D004538 ORTHO05D006068 3.8e-167 592.0 418 69.9
ATR0751G112 Amborella trichopoda HOM05D004538 ORTHO05D006068 5.2e-164 581.6 400 71.2
HPP92_015457 Vanilla planifolia HOM05D004538 ORTHO05D006068 1.8e-161 573.2 379 72.0
CDE06G0653 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.0e-151 540.8 356 73.3
AUR62032611 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.3e-151 539.7 427 66.5
Zm00001eb033900 Zea mays HOM05D004538 ORTHO05D006068 1.6e-149 533.5 412 65.3
BolC9t57580H Brassica oleracea HOM05D004538 ORTHO05D006068 8.3e-146 521.2 454 61.7
Mapoly0020s0071 Marchantia polymorpha HOM05D004538 ORTHO05D006068 1.3e-143 513.8 407 64.1
Pp3c7_5710 Physcomitrium patens HOM05D004538 ORTHO05D006068 1.7e-143 513.5 368 69.3
AUR62031724 Chenopodium quinoa HOM05D004538 ORTHO05D006068 2.3e-140 503.1 428 62.9
Nitab4.5_0001437g0060 Nicotiana tabacum HOM05D004538 ORTHO05D006068 4.0e-140 502.3 352 73.6
Manes.01G005033 Manihot esculenta HOM05D004538 ORTHO05D006068 1.3e-135 487.3 460 59.8
Cc02_g29840 Coffea canephora HOM05D004538 ORTHO05D006068 5.0e-135 485.3 343 73.5
AagrBONN_evm.TU.Sc2ySwM_368.2501 Anthoceros agrestis HOM05D004538 ORTHO05D006068 1.2e-133 480.7 411 59.6
CDE02G3208 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 1.6e-133 480.3 372 63.4
SMO353G0004 Selaginella moellendorffii HOM05D004538 ORTHO05D006068 3.1e-132 476.1 367 65.4
CBR_g24146 Chara braunii HOM05D004538 ORTHO05D006068 1.2e-128 464.2 371 62.3
AL8G31690 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.0e-128 461.8 275 81.8
Atru.chr2.2684 Acer truncatum HOM05D004538 ORTHO05D006068 1.8e-124 450.3 276 78.6
FvH4_2g10180 Fragaria vesca HOM05D004538 ORTHO05D006068 5.4e-121 438.7 272 80.1
CDE03G0061 Ceratophyllum demersum HOM05D004538 ORTHO05D006068 6.2e-117 425.2 289 71.3
FAN24G0261 Fragaria x ananassa HOM05D004538 ORTHO05D006068 1.3e-114 417.5 374 61.2
SalBow6G3380 Salvia bowleyana HOM05D004538 ORTHO05D006068 2.7e-112 409.8 437 54.2
Aa31LG3G11950 Aethionema arabicum HOM05D004538 ORTHO05D006068 3.5e-112 409.5 252 79.4
Potri.001G469701 Populus trichocarpa HOM05D004538 ORTHO05D006068 7.6e-107 391.7 288 69.1
MD07G1040600 Malus domestica HOM05D004538 ORTHO05D006068 1.7e-106 390.6 335 63.9
Duzib213G1090 Durio zibethinus HOM05D004538 ORTHO05D006068 5.8e-99 365.5 249 73.9
Cre02.g082700 Chlamydomonas reinhardtii HOM05D004538 ORTHO05D006068 1.2e-96 357.8 357 53.2
Atru.chr2.2623 Acer truncatum HOM05D004538 ORTHO05D006068 3.3e-94 349.7 210 82.4
Nitab4.5_0004391g0070 Nicotiana tabacum HOM05D004538 ORTHO05D006068 3.7e-93 346.3 283 67.1
PRCOL_00000259 Prasinoderma coloniale HOM05D004538 ORTHO05D006068 9.3e-89 331.6 331 50.2
A10p13310 Brassica napus HOM05D004538 ORTHO05D006068 1.5e-86 324.3 215 75.3
SEGI_29632 Sequoiadendron giganteum HOM05D004538 ORTHO05D006068 2.4e-84 317.0 201 73.1
Cc02_g29790 Coffea canephora HOM05D004538 ORTHO05D006068 5.3e-84 315.8 226 71.7
Aqoxy289s001 Aquilegia oxysepala HOM05D004538 ORTHO05D008153 5.9e-75 285.8 211 66.8
Aqoxy2G00269 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 8.8e-71 271.9 174 76.4
SHI46402 Sapria himalayana HOM05D004538 ORTHO05D006068 6.7e-63 245.7 178 69.1
SHI05855 Sapria himalayana HOM05D004538 ORTHO05D006068 2.0e-59 234.2 178 66.9
Haze_27104 Corylus avellana HOM05D004538 ORTHO05D163757 1.7e-58 231.1 335 41.5
Haze_26959 Corylus avellana HOM05D004538 ORTHO05D165751 3.2e-57 226.9 291 44.0
MSTRG.9067 Avicennia marina HOM05D004538 ORTHO05D006068 4.7e-56 223.0 124 83.1
Atru.chr2.2696 Acer truncatum HOM05D004538 ORTHO05D006068 5.2e-55 219.5 135 80.7
SHI05856 Sapria himalayana HOM05D004538 ORTHO05D006068 9.8e-46 188.7 134 72.4
Duzib268G1762 Durio zibethinus HOM05D004538 ORTHO05D006068 6.3e-37 159.5 112 75.0
QL03p014007 Quercus lobata HOM05D001565 ORTHO05D005515 4.5e-35 153.3 106 74.5
Aqoxy2G00270 Aquilegia oxysepala HOM05D004538 ORTHO05D006068 1.0e-34 152.1 84 83.3
Atru.chr2.2627 Acer truncatum HOM05D000397 ORTHO05D002023 2.8e-32 144.1 111 69.4
MSTRG.9065 Avicennia marina HOM05D004538 ORTHO05D006068 2.8e-32 144.1 101 73.3
MSTRG.9077 Avicennia marina HOM05D004538 ORTHO05D006068 3.1e-23 114.0 77 75.3
Atru.chr2.2679 Acer truncatum HOM05D004538 ORTHO05D052265 4.0e-23 113.6 97 62.9
ATR0499G006 Amborella trichopoda HOM05D004538 ORTHO05D066479 1.7e-21 108.2 117 53.8
QL10p039376 Quercus lobata HOM05D004538 ORTHO05D006068 8.3e-21 105.9 84 67.9
MD02G1271500 Malus domestica HOM05D004538 ORTHO05D006068 7.3e-17 92.8 59 84.7
RcHm_v2.0_Chr6g0267421 Rosa chinensis HOM05D004538 ORTHO05D006068 1.8e-15 88.2 59 81.4
ATR0499G019 Amborella trichopoda HOM05D004538 ORTHO05D006068 4.9e-13 80.1 58 56.9
QL02p081848 Quercus lobata HOM05D007814 ORTHO05D009902 8.3e-13 79.3 50 70.0
Cc02_g29820 Coffea canephora HOM05D004538 ORTHO05D006068 1.9e-12 78.2 68 54.4
Atru.chr2.2641 Acer truncatum HOM05D004538 ORTHO05D052874 7.8e-11 72.8 44 77.3


User provided reference genes

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