Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g094210 Medicago truncatula HOM05D001848 ORTHO05D001295 9.8e-55 216.5 103 100.0
TPR.G30659 Trifolium pratense HOM05D001848 ORTHO05D001295 3.3e-34 148.3 103 68.9
TPR.G30652 Trifolium pratense HOM05D001848 ORTHO05D001295 2.0e-31 139.0 103 66.0
Phvul.008G112900 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 1.7e-30 136.0 103 60.2
Psat2g010560 Pisum sativum HOM05D001848 ORTHO05D001295 4.9e-30 134.4 103 61.2
Glyma.18G191800 Glycine max HOM05D001848 ORTHO05D001295 3.2e-29 131.7 103 61.2
VMungo1383G1433 Vigna mungo HOM05D001848 ORTHO05D001295 5.4e-29 131.0 103 60.2
Glyma.18G191600 Glycine max HOM05D001848 ORTHO05D001295 7.8e-28 127.1 103 60.2
Glyma.07G141300 Glycine max HOM05D001848 ORTHO05D001295 1.3e-27 126.3 103 58.3
Ca_06356_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 2.3e-27 125.6 102 57.8
LjContig00272g0023351 Lotus japonicus HOM05D001848 ORTHO05D001295 1.1e-26 123.2 102 56.9
LjContig00272g0007655 Lotus japonicus HOM05D001848 ORTHO05D001295 1.5e-26 122.9 102 56.9
Glyma.07G141500 Glycine max HOM05D001848 ORTHO05D001295 2.5e-26 122.1 105 60.0
Phvul.006G050100 Phaseolus vulgaris HOM05D001848 ORTHO05D001295 2.0e-23 112.5 102 49.0
Lalb_Chr00c48g0412851 Lupinus albus HOM05D001848 ORTHO05D001295 5.8e-23 110.9 103 50.5
Lalb_Chr00c48g0413061 Lupinus albus HOM05D001848 ORTHO05D001295 5.8e-23 110.9 103 50.5
Lalb_Chr04g0248081 Lupinus albus HOM05D001848 ORTHO05D001295 5.8e-23 110.9 103 50.5
Glyma.08G324100 Glycine max HOM05D001848 ORTHO05D001295 7.6e-23 110.5 102 50.0
VMungo0540G1563 Vigna mungo HOM05D001848 ORTHO05D001295 6.4e-22 107.5 102 45.1
RcHm_v2.0_Chr5g0056191 Rosa chinensis HOM05D001848 ORTHO05D001295 1.6e-20 102.8 102 49.0
arahy.Tifrunner.gnm1.ann1.04HYJ8 Arachis hypogaea HOM05D001848 ORTHO05D001295 2.1e-20 102.4 101 48.5
FAN21G1579 Fragaria x ananassa HOM05D001848 ORTHO05D001295 2.7e-20 102.1 95 49.5
FvH4_3g30320 Fragaria vesca HOM05D001848 ORTHO05D001295 2.3e-19 99.0 95 48.4
MD11G1207300 Malus domestica HOM05D001848 ORTHO05D001295 2.3e-19 99.0 95 49.5
Lalb_Chr15g0081801 Lupinus albus HOM05D001848 ORTHO05D001295 6.6e-19 97.4 102 46.1
CiPaw.11G196700 Carya illinoinensis HOM05D001848 ORTHO05D001295 1.1e-18 96.7 104 50.0
Prupe.4G228100 Prunus persica HOM05D001848 ORTHO05D001295 1.1e-18 96.7 92 47.8
Cpa.g.sc12.222 Carica papaya HOM05D001848 ORTHO05D001295 5.6e-18 94.4 102 45.1
Lj6g0007816 Lotus japonicus HOM05D001848 ORTHO05D001295 5.6e-18 94.4 98 48.0
Medtr3g055250 Medicago truncatula HOM05D001848 ORTHO05D001295 1.4e-16 89.7 87 47.1
TPR.G23577 Trifolium pratense HOM05D001848 ORTHO05D001295 1.4e-16 89.7 87 46.0
Eucgr.F03514 Eucalyptus grandis HOM05D001848 ORTHO05D001295 3.4e-15 85.1 102 42.2
MBI07_g13964_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 5.8e-15 84.3 92 46.7
TAR627G0109 Trochodendron aralioides HOM05D001848 ORTHO05D001295 9.9e-15 83.6 86 44.2
TAR627G0750 Trochodendron aralioides HOM05D001848 ORTHO05D001295 9.9e-15 83.6 86 44.2
arahy.Tifrunner.gnm1.ann1.V0MKZ1 Arachis hypogaea HOM05D001848 ORTHO05D001295 3.8e-14 81.6 85 48.2
Ciclev10010463m.g Citrus clementina HOM05D001848 ORTHO05D001295 6.4e-14 80.9 77 46.8
TWI38G0794 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 6.4e-14 80.9 99 41.4
CANSAT11G0228 Cannabis sativa HOM05D001848 ORTHO05D001295 2.4e-13 79.0 104 37.5
CANSAT25G2839 Cannabis sativa HOM05D001848 ORTHO05D001295 2.4e-13 79.0 104 37.5
CANSAT54G2121 Cannabis sativa HOM05D001848 ORTHO05D001295 2.4e-13 79.0 104 37.5
CANSAT64G2475 Cannabis sativa HOM05D001848 ORTHO05D001295 2.4e-13 79.0 104 37.5
Carub.0008s1579 Capsella rubella HOM05D008197 ORTHO05D001295 2.4e-13 79.0 82 45.1
CARHR268760 Cardamine hirsuta HOM05D008197 ORTHO05D001295 2.4e-13 79.0 100 38.0
DCAR_013205 Daucus carota HOM05D001848 ORTHO05D001295 2.4e-13 79.0 99 39.4
PGR031G3783 Punica granatum HOM05D001848 ORTHO05D001295 3.2e-13 78.6 76 46.1
CARHR268750 Cardamine hirsuta HOM05D008197 ORTHO05D001295 7.1e-13 77.4 103 36.9
Lsat_1_v5_gn_7_113461 Lactuca sativa HOM05D001848 ORTHO05D001295 9.3e-13 77.0 95 40.0
AL8G30970 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 1.2e-12 76.6 98 40.8
ECA236G2606 Erigeron canadensis HOM05D001848 ORTHO05D001295 1.2e-12 76.6 74 43.2
TAR626G1904 Trochodendron aralioides HOM05D001848 ORTHO05D001295 1.2e-12 76.6 73 46.6
MELO3C013103.2 Cucumis melo HOM05D001848 ORTHO05D001295 2.1e-12 75.9 91 45.1
Gohir.A01G085500 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.1e-12 75.9 100 40.0
Carub.0008s1578 Capsella rubella HOM05D008197 ORTHO05D001295 3.5e-12 75.1 76 44.7
THA.LOC104817694 Tarenaya hassleriana HOM05D008197 ORTHO05D001295 3.5e-12 75.1 91 44.0
Oeu019626.1 Olea europaea HOM05D001848 ORTHO05D001295 4.6e-12 74.7 90 35.6
Gohir.D01G071850 Gossypium hirsutum HOM05D001848 ORTHO05D001295 6.0e-12 74.3 95 41.1
Gorai.002G094700 Gossypium raimondii HOM05D001848 ORTHO05D001295 6.0e-12 74.3 95 41.1
DCAR_017099 Daucus carota HOM05D001848 ORTHO05D001295 1.0e-11 73.6 103 35.0
Thhalv10026641m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 1.0e-11 73.6 103 34.0
Thecc.07G025000 Theobroma cacao HOM05D001848 ORTHO05D001295 1.3e-11 73.2 103 37.9
Nn1g07396 Nelumbo nucifera HOM05D001848 ORTHO05D001295 2.3e-11 72.4 103 38.8
COL.COLO4_09753 Corchorus olitorius HOM05D001848 ORTHO05D001295 3.0e-11 72.0 73 46.6
Duzib213G0158 Durio zibethinus HOM05D001848 ORTHO05D001295 3.0e-11 72.0 99 36.4
Glyma.20G248700 Glycine max HOM05D001848 ORTHO05D001295 3.0e-11 72.0 92 41.3
ClCG09G020930 Citrullus lanatus HOM05D001848 ORTHO05D001295 3.9e-11 71.6 89 41.6
Migut.H01781 Erythranthe guttata HOM05D001848 ORTHO05D001295 3.9e-11 71.6 92 38.0
Rhsim01G0248600 Rhododendron simsii HOM05D001848 ORTHO05D001295 3.9e-11 71.6 99 40.4
Aa31LG3G11410 Aethionema arabicum HOM05D008197 ORTHO05D001295 5.1e-11 71.2 96 33.3
CARHR268770 Cardamine hirsuta HOM05D008197 ORTHO05D001295 6.6e-11 70.9 80 43.8
BcaC07g41668 Brassica carinata HOM05D008197 ORTHO05D001295 1.1e-10 70.1 77 44.2
Gohir.D05G377400 Gossypium hirsutum HOM05D001848 ORTHO05D001295 1.1e-10 70.1 88 39.8
Gorai.009G445200 Gossypium raimondii HOM05D001848 ORTHO05D001295 1.1e-10 70.1 88 39.8
Solyc01g066910.3 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.1e-10 70.1 99 41.4
Solyc07g065110.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 1.1e-10 70.1 73 42.5
ClCG09G020940 Citrullus lanatus HOM05D001848 ORTHO05D001295 1.5e-10 69.7 99 39.4
Glyma.10G297600 Glycine max HOM05D001848 ORTHO05D001295 1.5e-10 69.7 103 37.9
Lalb_Chr15g0086921 Lupinus albus HOM05D001848 ORTHO05D001295 1.9e-10 69.3 58 51.7
MBI07_g42482_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 1.9e-10 69.3 93 38.7
BcaB01g04342 Brassica carinata HOM05D008197 ORTHO05D001295 2.5e-10 68.9 95 40.0
A02p09680 Brassica napus HOM05D008197 ORTHO05D001295 2.5e-10 68.9 100 39.0
A03p14070 Brassica napus HOM05D008197 ORTHO05D001295 2.5e-10 68.9 77 42.9
BraA03t10707Z Brassica rapa HOM05D008197 ORTHO05D001295 2.5e-10 68.9 77 42.9
Os07g0290200 Oryza sativa ssp. japonica HOM05D001848 ORTHO05D001295 2.5e-10 68.9 104 40.4
Aqoxy2G03960 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 3.3e-10 68.6 85 42.4
AL8G30960 Arabidopsis lyrata HOM05D008197 ORTHO05D001295 3.3e-10 68.6 106 37.7
Carub.0008s1575 Capsella rubella HOM05D008197 ORTHO05D001295 3.3e-10 68.6 106 37.7
Thhalv10015086m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 3.3e-10 68.6 103 32.0
Sopen01g028530 Solanum pennellii HOM05D001848 ORTHO05D001295 3.3e-10 68.6 93 41.9
CSS0017942 Camellia sinensis var. sinensis HOM05D001848 ORTHO05D001295 4.3e-10 68.2 100 36.0
Cpa.g.sc8.74 Carica papaya HOM05D001848 ORTHO05D001295 4.3e-10 68.2 100 41.0
Duzib133G1037 Durio zibethinus HOM05D001848 ORTHO05D001295 4.3e-10 68.2 100 39.0
RcHm_v2.0_Chr6g0282851 Rosa chinensis HOM05D001848 ORTHO05D001295 4.3e-10 68.2 88 40.9
Sopen07g033320 Solanum pennellii HOM05D001848 ORTHO05D001295 4.3e-10 68.2 96 37.5
Thhalv10015912m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 5.6e-10 67.8 106 36.8
Gohir.A04G010600 Gossypium hirsutum HOM05D001848 ORTHO05D001295 5.6e-10 67.8 88 39.8
C03p16510 Brassica napus HOM05D008197 ORTHO05D001295 7.3e-10 67.4 94 39.4
BolC3t14070H Brassica oleracea HOM05D008197 ORTHO05D001295 7.3e-10 67.4 94 39.4
Gorai.N003400 Gossypium raimondii HOM05D001848 ORTHO05D001295 9.6e-10 67.0 85 42.4
Lj3g0013447 Lotus japonicus HOM05D001848 ORTHO05D001295 9.6e-10 67.0 92 38.0
C02p16150 Brassica napus HOM05D008197 ORTHO05D001295 1.6e-09 66.2 100 39.0
BolC2t07720H Brassica oleracea HOM05D008197 ORTHO05D001295 1.6e-09 66.2 100 39.0
Sp6g17330 Schrenkiella parvula HOM05D008197 ORTHO05D001295 1.6e-09 66.2 83 41.0
Atru.chr5.2942 Acer truncatum HOM05D001848 ORTHO05D001295 2.1e-09 65.9 92 33.7
CAN.G337.44 Capsicum annuum HOM05D001848 ORTHO05D001295 2.1e-09 65.9 96 37.5
Thhalv10015898m.g Eutrema salsugineum HOM05D008197 ORTHO05D001295 2.1e-09 65.9 77 42.9
Sed0015281 Sechium edule HOM05D001848 ORTHO05D001295 2.1e-09 65.9 86 40.7
AT5G48485 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 2.8e-09 65.5 100 36.0
AT5G55410 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 2.8e-09 65.5 106 37.7
Sc17g0001780 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.8e-09 65.5 94 37.2
CsaV3_7G018810 Cucumis sativus L. HOM05D001848 ORTHO05D001295 3.6e-09 65.1 88 42.0
Mapoly0120s0024 Marchantia polymorpha HOM05D012754 ORTHO05D015707 3.6e-09 65.1 104 36.5
MD05G1159700 Malus domestica HOM05D001848 ORTHO05D001295 4.8e-09 64.7 88 38.6
Peaxi162Scf00235g00085 Petunia axillaris HOM05D001848 ORTHO05D001295 4.8e-09 64.7 74 40.5
CARHR183590 Cardamine hirsuta HOM05D001848 ORTHO05D001295 6.2e-09 64.3 93 34.4
FvH4_2g17820 Fragaria vesca HOM05D001848 ORTHO05D001295 6.2e-09 64.3 96 39.6
MBI16_g31711_MAGBIO Magnolia biondii HOM05D001848 ORTHO05D001295 6.2e-09 64.3 100 36.0
Medtr4g069200 Medicago truncatula HOM05D001848 ORTHO05D001295 6.2e-09 64.3 85 38.8
Aqoxy1G04063 Aquilegia oxysepala HOM05D001848 ORTHO05D001295 8.1e-09 63.9 92 33.7
MSTRG.22559 Avicennia marina HOM05D001848 ORTHO05D001295 8.1e-09 63.9 94 41.5
FAN15G2800 Fragaria x ananassa HOM05D001848 ORTHO05D001295 8.1e-09 63.9 92 41.3
Zm00001eb305200 Zea mays HOM05D001848 ORTHO05D001295 8.1e-09 63.9 96 34.4
BraA02t06032Z Brassica rapa HOM05D008197 ORTHO05D001295 1.1e-08 63.5 100 37.0
BcaC01g06365 Brassica carinata HOM05D008197 ORTHO05D001295 1.4e-08 63.2 71 45.1
FAN24G2491 Fragaria x ananassa HOM05D001848 ORTHO05D001295 1.4e-08 63.2 96 39.6
HPP92_013640 Vanilla planifolia HOM05D001848 ORTHO05D001295 1.4e-08 63.2 95 35.8
Thhalv10005129m.g Eutrema salsugineum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 99 34.3
PSO210G3247 Papaver somniferum HOM05D001848 ORTHO05D001295 1.8e-08 62.8 80 33.8
ATR0712G087 Amborella trichopoda HOM05D001848 ORTHO05D001295 2.4e-08 62.4 92 31.5
AT5G55460 Arabidopsis thaliana HOM05D008197 ORTHO05D001295 2.4e-08 62.4 77 40.3
BraA10t43357Z Brassica rapa HOM05D008197 ORTHO05D001295 3.1e-08 62.0 77 39.0
PSO832G2089 Papaver somniferum HOM05D001848 ORTHO05D001295 3.1e-08 62.0 95 33.7
TWI36G0223 Tripterygium wilfordii HOM05D001848 ORTHO05D001295 3.1e-08 62.0 93 35.5
Nitab4.5_0004362g0040 Nicotiana tabacum HOM05D001848 ORTHO05D001295 4.0e-08 61.6 74 39.2
TPR.G26815 Trifolium pratense HOM05D001848 ORTHO05D001295 4.0e-08 61.6 92 35.9
Atru.chr6.3548 Acer truncatum HOM05D001848 ORTHO05D001295 5.3e-08 61.2 90 38.9
Peaxi162Scf00534g00001 Petunia axillaris HOM05D001848 ORTHO05D001295 5.3e-08 61.2 65 44.6
Psat7g184880 Pisum sativum HOM05D001848 ORTHO05D001295 5.3e-08 61.2 86 41.9
Zm00001eb094610 Zea mays HOM05D001848 ORTHO05D001295 5.3e-08 61.2 78 39.7
CsaV3_7G018790 Cucumis sativus L. HOM05D001848 ORTHO05D001295 6.9e-08 60.8 86 40.7
Rhsim12G0036400 Rhododendron simsii HOM05D001848 ORTHO05D001295 6.9e-08 60.8 93 37.6
Rhsim12G0036500 Rhododendron simsii HOM05D001848 ORTHO05D001295 6.9e-08 60.8 93 37.6
Sc17g0001770 Simmondsia chinensis HOM05D001848 ORTHO05D001295 9.0e-08 60.5 85 36.5
PGSC0003DMG400022295 Solanum tuberosum HOM05D001848 ORTHO05D001295 9.0e-08 60.5 94 34.0
Zm00001eb305230 Zea mays HOM05D001848 ORTHO05D001295 9.0e-08 60.5 96 37.5
CAN.G322.111 Capsicum annuum HOM05D001848 ORTHO05D001295 1.5e-07 59.7 74 40.5
Sopen01g051580 Solanum pennellii HOM05D001848 ORTHO05D001295 1.5e-07 59.7 78 38.5
arahy.Tifrunner.gnm1.ann1.IET74Z Arachis hypogaea HOM05D001848 ORTHO05D001295 2.0e-07 59.3 86 38.4
arahy.Tifrunner.gnm1.ann1.N7EMKY Arachis hypogaea HOM05D001848 ORTHO05D001295 2.0e-07 59.3 86 38.4
arahy.Tifrunner.gnm1.ann1.QR3PTX Arachis hypogaea HOM05D001848 ORTHO05D001295 2.0e-07 59.3 86 38.4
Gohir.D07G167100 Gossypium hirsutum HOM05D001848 ORTHO05D001295 2.0e-07 59.3 84 39.3
Sabra02G0190900 Salix brachista HOM05D001848 ORTHO05D001295 2.0e-07 59.3 89 39.3
Sc17g0001750 Simmondsia chinensis HOM05D001848 ORTHO05D001295 2.6e-07 58.9 75 40.0
MD10G1081500 Malus domestica HOM05D001848 ORTHO05D001295 3.4e-07 58.5 97 36.1
Nitab4.5_0011417g0010 Nicotiana tabacum HOM05D001848 ORTHO05D001295 3.4e-07 58.5 74 40.5
Sc17g0001710 Simmondsia chinensis HOM05D001848 ORTHO05D001295 3.4e-07 58.5 85 41.2
HPP92_009932 Vanilla planifolia HOM05D001848 ORTHO05D001295 3.4e-07 58.5 78 39.7
A02p37500 Brassica napus HOM05D001848 ORTHO05D001295 4.5e-07 58.2 81 33.3
BraA02t08737Z Brassica rapa HOM05D001848 ORTHO05D001295 4.5e-07 58.2 81 33.3
AT5G48490 Arabidopsis thaliana HOM05D001848 ORTHO05D001295 5.8e-07 57.8 81 34.6
Nitab4.5_0001160g0120 Nicotiana tabacum HOM05D001848 ORTHO05D001295 5.8e-07 57.8 89 36.0
Solyc03g121900.1 Solanum lycopersicum HOM05D001848 ORTHO05D001295 5.8e-07 57.8 102 34.3
Cc04_g01540 Coffea canephora HOM05D001848 ORTHO05D001295 7.6e-07 57.4 76 39.5
COL.COLO4_32457 Corchorus olitorius HOM05D001848 ORTHO05D001295 7.6e-07 57.4 108 32.4
Potri.002G251000 Populus trichocarpa HOM05D001848 ORTHO05D001295 7.6e-07 57.4 87 39.1
Prupe.8G190500 Prunus persica HOM05D001848 ORTHO05D001295 7.6e-07 57.4 90 36.7
arahy.Tifrunner.gnm1.ann1.0X4CPT Arachis hypogaea HOM05D001848 ORTHO05D001295 9.9e-07 57.0 86 37.2
arahy.Tifrunner.gnm1.ann1.E6CSJF Arachis hypogaea HOM05D001848 ORTHO05D001295 9.9e-07 57.0 67 43.3
arahy.Tifrunner.gnm1.ann1.UI26XR Arachis hypogaea HOM05D001848 ORTHO05D001295 9.9e-07 57.0 86 38.4
arahy.Tifrunner.gnm1.ann1.PJ92NG Arachis hypogaea HOM05D001848 ORTHO05D001295 1.3e-06 56.6 67 43.3
A10p12640 Brassica napus HOM05D008197 ORTHO05D001295 1.3e-06 56.6 72 40.3
Cpa.g.sc1200.2 Carica papaya HOM05D001848 ORTHO05D001295 1.3e-06 56.6 79 43.0
Oeu014325.1 Olea europaea HOM05D001848 ORTHO05D001295 1.3e-06 56.6 78 39.7
TPR.G28533 Trifolium pratense HOM05D001848 ORTHO05D001295 1.3e-06 56.6 68 36.8
Carub.0008s1580 Capsella rubella HOM05D008197 ORTHO05D001295 1.7e-06 56.2 77 36.4
PGSC0003DMG400025168 Solanum tuberosum HOM05D001848 ORTHO05D001295 1.7e-06 56.2 78 37.2
SGA_v2.0_scaffold55G19808 Striga asiatica HOM05D001848 ORTHO05D001295 2.2e-06 55.8 77 36.4
Medtr4g069220 Medicago truncatula HOM05D001848 ORTHO05D001295 2.9e-06 55.5 79 34.2
TPR.G28058 Trifolium pratense HOM05D001848 ORTHO05D001295 2.9e-06 55.5 99 35.4
TPR.G28530 Trifolium pratense HOM05D001848 ORTHO05D001295 3.8e-06 55.1 97 32.0
Ciclev10029642m.g Citrus clementina HOM05D001848 ORTHO05D001295 4.9e-06 54.7 104 29.8
CsaV3_7G026880 Cucumis sativus L. HOM05D001848 ORTHO05D001295 4.9e-06 54.7 85 36.5
Ca_20849_v3 Cicer arietinum L. HOM05D001848 ORTHO05D001295 6.4e-06 54.3 99 32.3
Prupe.8G102700 Prunus persica HOM05D001848 ORTHO05D001295 6.4e-06 54.3 66 37.9


User provided reference genes

Program Settings