Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 4.3e-175 617.8 304 100.0
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.9e-155 552.0 304 90.8
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.9e-154 549.3 304 90.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.3e-152 543.1 306 90.5
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 8.8e-136 487.3 303 83.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 7.4e-135 484.2 302 81.8
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 1.5e-132 476.5 303 81.5
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.0e-131 473.8 295 81.7
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 6.7e-128 461.1 248 90.7
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 6.7e-128 461.1 301 79.4
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 5.0e-123 444.9 299 75.9
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 7.2e-122 441.0 296 74.0
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 3.6e-121 438.7 250 85.6
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.8e-120 436.4 245 84.9
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.8e-120 436.4 304 73.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 2.6e-119 432.6 277 75.8
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.4e-119 432.2 319 71.2
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 8.3e-118 427.6 280 76.4
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.1e-117 427.2 287 72.8
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 2.4e-117 426.0 248 81.5
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.2e-116 423.7 309 70.2
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 1.6e-116 423.3 283 76.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 2.0e-116 422.9 275 76.0
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.5e-116 422.2 246 81.3
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.5e-116 422.2 301 71.8
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 4.5e-116 421.8 245 81.2
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.7e-116 421.0 242 82.2
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 7.7e-116 421.0 243 81.1
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.7e-116 421.0 243 81.1
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.7e-115 419.9 302 70.9
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.2e-115 419.5 243 80.7
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.9e-115 419.1 244 81.6
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.9e-115 419.1 276 75.4
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.8e-115 418.7 245 80.8
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 3.8e-115 418.7 308 70.1
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 5.0e-115 418.3 242 80.2
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 5.0e-115 418.3 260 75.8
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 8.5e-115 417.5 288 71.5
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.1e-114 417.2 268 76.5
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 1.1e-114 417.2 312 68.9
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 1.9e-114 416.4 277 72.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.9e-114 416.4 288 71.9
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 1.9e-114 416.4 242 82.2
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 1.9e-114 416.4 242 82.2
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 3.2e-114 415.6 242 80.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.5e-114 414.8 304 67.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 5.5e-114 414.8 262 76.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.2e-114 414.5 242 80.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 7.2e-114 414.5 319 66.5
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 9.4e-114 414.1 257 77.8
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.2e-113 413.7 248 78.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.2e-113 413.7 249 77.5
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.2e-113 413.7 242 80.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.2e-113 413.7 242 81.4
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.6e-113 413.3 245 80.0
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.6e-113 413.3 286 73.4
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 2.1e-113 412.9 267 76.4
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 3.6e-113 412.1 332 65.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 6.1e-113 411.4 255 76.9
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.0e-112 410.6 245 77.1
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 1.4e-112 410.2 242 79.8
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 1.4e-112 410.2 242 77.7
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 1.8e-112 409.8 242 79.8
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 3.0e-112 409.1 248 77.0
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 4.0e-112 408.7 245 78.0
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 8.8e-112 407.5 242 78.1
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.2e-111 407.1 242 77.3
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.5e-111 406.8 305 68.2
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.0e-111 406.4 260 75.0
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 2.0e-111 406.4 241 78.4
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 2.6e-111 406.0 254 77.2
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.4e-111 405.6 246 77.2
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 5.7e-111 404.8 245 77.6
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 9.8e-111 404.1 242 78.5
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 9.8e-111 404.1 261 75.5
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 4.8e-110 401.7 256 74.2
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 6.3e-110 401.4 256 73.8
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 8.3e-110 401.0 301 67.8
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 1.6e-108 396.7 270 71.9
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 2.7e-108 396.0 289 67.1
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.3e-107 393.7 246 74.8
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.7e-107 393.3 247 74.5
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 8.6e-107 391.0 247 73.7
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.5e-106 390.2 309 63.1
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.5e-106 389.4 242 74.4
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.1e-105 386.3 242 75.2
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.0e-104 384.0 250 71.6
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 1.8e-104 383.3 398 54.8
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-104 383.3 299 65.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.3e-104 382.9 324 63.0
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 1.5e-103 380.2 297 67.3
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.4e-101 373.6 319 61.4
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-101 373.2 302 65.2
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 5.0e-99 365.2 245 71.4
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 6.6e-99 364.8 258 69.8
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 7.3e-98 361.3 282 65.2
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 7.3e-98 361.3 371 54.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 2.1e-97 359.8 292 62.7
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 4.0e-96 355.5 219 77.6
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.9e-94 348.6 246 69.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 8.3e-94 347.8 250 66.0
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.2e-92 344.0 277 62.5
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.7e-92 342.8 215 73.5
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.0e-91 340.9 249 67.9
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.1e-90 337.4 249 69.5
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 4.7e-89 332.0 243 67.9
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.4e-88 330.5 245 62.0
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 5.4e-85 318.5 212 74.5
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 9.2e-85 317.8 254 63.0
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 5.8e-79 298.5 264 58.7
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.2e-77 292.7 231 63.6
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.1e-76 290.0 173 81.5
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.3e-75 286.6 264 52.7
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.5e-74 283.9 212 62.7
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 6.4e-70 268.5 176 75.0
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 4.6e-68 262.3 164 76.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.7e-67 260.4 251 54.6
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 5.1e-67 258.8 159 79.2
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 8.7e-67 258.1 237 52.7
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.5e-66 257.3 224 60.3
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 3.2e-61 239.6 140 81.4
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.0e-59 233.0 191 63.9
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 9.6e-58 228.0 242 41.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-56 224.6 142 76.1
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.4e-56 224.2 206 59.2
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.2e-55 221.1 257 50.6
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.3e-54 217.6 137 75.2
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.2e-53 213.0 238 46.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 7.9e-52 208.4 130 76.9
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 4.3e-50 202.6 149 63.1
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.4e-48 197.6 116 76.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.0e-48 196.1 126 76.2
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.7e-46 190.7 111 79.3
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.2e-45 186.4 111 76.6
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.2e-45 186.4 155 65.2
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 9.3e-45 184.9 110 80.9
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 7.9e-44 181.8 135 67.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 7.9e-44 181.8 135 67.4
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 3.9e-43 179.5 237 39.2
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.1e-42 177.9 99 79.8
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 2.6e-39 166.8 163 55.8
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.8e-38 162.9 97 77.3
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.9e-37 160.6 219 40.2
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 4.2e-37 159.5 101 71.3
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 3.9e-35 152.9 211 40.3
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.5e-34 150.2 82 78.0
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.8e-32 144.1 81 79.0
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 6.9e-32 142.1 77 84.4
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.0e-30 138.3 77 77.9
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.8e-30 136.3 76 82.9
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 6.7e-27 125.6 69 82.6
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.4e-24 117.9 245 33.1
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.2e-23 114.8 56 85.7
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 5.0e-22 109.4 82 63.4
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 6.5e-22 109.0 83 65.1
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.2e-21 106.3 63 76.2
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.6e-18 97.1 70 65.7
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.7e-17 94.4 53 77.4
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 4.8e-17 92.8 48 81.2
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 3.5e-15 86.7 114 42.1
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 3.8e-14 83.2 48 70.8
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.7e-12 77.0 59 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 2.2e-09 67.4 100 39.0
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 1.8e-08 64.3 77 46.8
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 4.1e-08 63.2 44 65.9


User provided reference genes

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