Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 0.0e+00 2642.8 1379 100.0
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 0.0e+00 1882.8 1404 74.4
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 0.0e+00 1791.9 1411 71.5
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 0.0e+00 1761.9 1415 71.4
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 0.0e+00 1329.3 1431 55.6
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 0.0e+00 1274.6 1436 55.2
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 0.0e+00 1271.1 1435 56.0
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 0.0e+00 1264.2 1427 55.1
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 0.0e+00 1252.3 1430 54.5
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 0.0e+00 1122.1 1488 49.2
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 0.0e+00 1097.8 1459 49.3
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 1.2e-309 1067.0 1401 50.2
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 7.5e-259 898.3 1419 45.2
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 1.8e-236 823.9 1333 44.0
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 1.7e-226 790.8 1332 44.1
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 2.7e-184 650.6 775 51.9
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 1.1e-166 592.0 985 43.2
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 7.2e-161 572.8 1495 37.0
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 4.5e-155 553.5 1499 37.0
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 4.9e-133 480.3 406 65.3
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 4.1e-108 397.5 1284 32.6
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 1.5e-97 362.5 469 50.1
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 9.0e-87 326.6 1215 31.0
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 2.4e-79 302.0 1253 29.3
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.3e-74 286.2 1267 28.5
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 1.4e-71 276.2 1258 28.3
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 1.0e-69 270.0 1322 29.1
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 5.0e-69 267.7 977 30.2
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 1.9e-68 265.8 1240 28.3
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 3.9e-66 258.1 1249 28.2
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 5.1e-66 257.7 1256 28.9
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 1.7e-61 242.7 1297 27.3
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 2.5e-60 238.8 1266 27.3
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 1.2e-59 236.5 1257 28.6
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 6.1e-59 234.2 1310 27.4
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 1.5e-57 229.6 1300 27.3
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 1.5e-57 229.6 1253 28.0
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 9.7e-57 226.9 1310 27.3
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 1.7e-56 226.1 1161 27.8
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 2.4e-55 222.2 986 26.5
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.4e-55 222.2 1452 26.0
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 2.9e-53 215.3 959 27.6
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 1.1e-52 213.4 966 28.3
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 5.7e-49 201.1 1169 27.6
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 8.2e-48 197.2 811 29.0
VMungo0540G1881 Vigna mungo HOM05D006994 ORTHO05D008229 2.2e-45 189.1 349 42.7
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 8.5e-45 187.2 1431 24.9
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 8.0e-43 180.6 979 26.3
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 2.6e-41 175.6 828 28.6
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 2.4e-39 169.1 1301 26.3
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 9.1e-39 167.2 1027 26.5
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 9.4e-36 157.1 1175 24.8
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 6.1e-35 154.5 1061 25.4
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.0e-30 139.4 789 25.9
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 2.3e-29 136.0 1278 24.6
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 1.5e-25 123.2 1059 23.9
Lalb_Chr17g0348351 Lupinus albus HOM05D006994 ORTHO05D008229 6.3e-24 117.9 287 33.4
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 3.1e-23 115.5 1280 24.8
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 3.1e-23 115.5 1121 23.7
CiPaw.03G188100 Carya illinoinensis HOM05D006994 ORTHO05D008229 8.0e-19 100.9 180 37.8
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 1.5e-17 96.7 961 24.5
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.6e-17 95.9 1230 22.9
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 1.4e-15 90.1 1244 23.3
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 5.4e-15 88.2 148 41.9
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 2.0e-14 86.3 1250 23.1
Cfa022556 Carpinus fangiana HOM05D006994 ORTHO05D008229 3.0e-13 82.4 174 35.1
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.9e-13 82.0 254 30.7
Psat4g063160 Pisum sativum HOM05D001507 ORTHO05D002108 8.6e-13 80.9 87 58.6
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 5.6e-12 78.2 1216 22.6
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 9.5e-12 77.4 1148 23.2
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 1.2e-11 77.0 160 34.4
Medtr3g452530 Medicago truncatula HOM05D006994 ORTHO05D008229 1.2e-11 77.0 330 25.8
FAN05G1234 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.6e-11 75.5 192 33.9
COL.COLO4_33720 Corchorus olitorius HOM05D006994 ORTHO05D008229 1.5e-09 70.1 94 44.7
Cpa.g.sc50.70 Carica papaya HOM05D006994 ORTHO05D008229 2.6e-09 69.3 151 35.8
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 7.5e-09 67.8 1254 23.4
Lalb_Chr17g0348331 Lupinus albus HOM05D006994 ORTHO05D008229 7.5e-09 67.8 52 59.6
SEGI_40378 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 2.9e-08 65.9 358 24.3
Hma1.2p1_0036F.1_g023740 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 2.4e-07 62.8 204 29.4
SEGI_14105 Sequoiadendron giganteum HOM05D021706 ORTHO05D018121 1.6e-06 60.1 80 46.2
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 3.5e-06 58.9 86 47.7


User provided reference genes

Program Settings