Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g091210 Medicago truncatula HOM05D002109 ORTHO05D002149 2.7e-39 164.9 83 100.0
Psat1g166560 Pisum sativum HOM05D002109 ORTHO05D002149 9.8e-13 76.6 47 85.1
Medtr2g030530 Medicago truncatula HOM05D002109 ORTHO05D002149 2.2e-12 75.5 63 69.8
TPR.G26345 Trifolium pratense HOM05D002109 ORTHO05D002149 4.8e-12 74.3 63 68.3
Ca_00855_v3 Cicer arietinum L. HOM05D002109 ORTHO05D002149 1.8e-11 72.4 63 66.7
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 4.5e-10 67.8 47 68.1
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 5.9e-10 67.4 46 76.1
arahy.Tifrunner.gnm1.ann1.KL67S4 Arachis hypogaea HOM05D002109 ORTHO05D002149 7.7e-10 67.0 47 68.1
arahy.Tifrunner.gnm1.ann1.P8184S Arachis hypogaea HOM05D002109 ORTHO05D002149 7.7e-10 67.0 47 68.1
Sabra06G0036400 Salix brachista HOM05D002109 ORTHO05D002149 3.2e-08 61.6 46 60.9
AUR62012827 Chenopodium quinoa HOM05D002109 ORTHO05D002149 4.2e-08 61.2 46 60.9
Eucgr.E02492 Eucalyptus grandis HOM05D002109 ORTHO05D002149 4.2e-08 61.2 46 56.5
Potri.006G051800 Populus trichocarpa HOM05D002109 ORTHO05D002149 9.4e-08 60.1 46 60.9
Rhsim02G0160300 Rhododendron simsii HOM05D002109 ORTHO05D002149 1.2e-07 59.7 48 56.2
Ca_00800_v3 Cicer arietinum L. HOM05D002109 ORTHO05D002149 1.6e-07 59.3 47 55.3
MBI02_g11455_MAGBIO Magnolia biondii HOM05D002109 ORTHO05D002149 1.6e-07 59.3 42 64.3
EL10Ac8g20232 Beta vulgaris HOM05D002109 ORTHO05D002149 2.1e-07 58.9 46 56.5
Sc17g0004660 Simmondsia chinensis HOM05D002109 ORTHO05D002149 2.1e-07 58.9 46 63.0
THA.LOC104814320 Tarenaya hassleriana HOM05D002109 ORTHO05D002149 2.7e-07 58.5 46 56.5
CDE04G1545 Ceratophyllum demersum HOM05D002109 ORTHO05D002149 3.6e-07 58.2 63 49.2
Ah.14g087480 Amaranthus hybridus HOM05D002109 ORTHO05D002149 4.7e-07 57.8 46 54.3
ATR0686G237 Amborella trichopoda HOM05D002109 ORTHO05D002149 4.7e-07 57.8 42 64.3
TAR626G0561 Trochodendron aralioides HOM05D002109 ORTHO05D002149 4.7e-07 57.8 46 56.5
Cfa000833 Carpinus fangiana HOM05D002109 ORTHO05D002149 6.1e-07 57.4 46 56.5
Potri.016G055300 Populus trichocarpa HOM05D002109 ORTHO05D002149 6.1e-07 57.4 46 60.9
Zm00001eb059860 Zea mays HOM05D002109 ORTHO05D002149 6.1e-07 57.4 46 54.3
Glyma.09G022100 Glycine max HOM05D002109 ORTHO05D002149 8.0e-07 57.0 47 55.3
Glyma.15G128400 Glycine max HOM05D002109 ORTHO05D002149 8.0e-07 57.0 47 55.3
Sabra16G0058000 Salix brachista HOM05D002109 ORTHO05D002149 8.0e-07 57.0 46 54.3
SEGI_12279 Sequoiadendron giganteum HOM05D002109 ORTHO05D002149 8.0e-07 57.0 64 46.9
ATR0165G009 Amborella trichopoda HOM05D002109 ORTHO05D002149 1.0e-06 56.6 42 61.9
ClCG09G008840 Citrullus lanatus HOM05D002109 ORTHO05D002149 1.4e-06 56.2 46 54.3
CsaV3_7G026030 Cucumis sativus L. HOM05D002109 ORTHO05D002149 1.4e-06 56.2 46 54.3
Lalb_Chr15g0088711 Lupinus albus HOM05D002109 ORTHO05D002149 1.4e-06 56.2 47 55.3
SEGI_07916 Sequoiadendron giganteum HOM05D002109 ORTHO05D002149 1.8e-06 55.8 56 57.1
Ah.09g234060 Amaranthus hybridus HOM05D002109 ORTHO05D002149 2.3e-06 55.5 46 52.2
Haze_05772 Corylus avellana HOM05D002109 ORTHO05D002149 2.3e-06 55.5 42 59.5
Lalb_Chr20g0119981 Lupinus albus HOM05D002109 ORTHO05D002149 2.3e-06 55.5 47 55.3
Medtr2g029520 Medicago truncatula HOM05D002109 ORTHO05D002149 2.3e-06 55.5 45 55.6
Ciclev10016636m.g Citrus clementina HOM05D002109 ORTHO05D002149 3.0e-06 55.1 42 57.1
MELO3C021055.2 Cucumis melo HOM05D002109 ORTHO05D002149 3.0e-06 55.1 46 52.2
Dinv15923 Davidia involucrata HOM05D002109 ORTHO05D002149 3.0e-06 55.1 42 57.1
Hma1.2p1_0333F.1_g128360 Hydrangea macrophylla HOM05D002109 ORTHO05D002149 3.0e-06 55.1 46 52.2
vmacro10971 Vaccinium macrocarpon HOM05D002109 ORTHO05D002149 3.0e-06 55.1 55 47.3
QL05p053263 Quercus lobata HOM05D002109 ORTHO05D002149 4.0e-06 54.7 45 53.3
THA.LOC104812684 Tarenaya hassleriana HOM05D002109 ORTHO05D002149 4.0e-06 54.7 46 50.0
Aqoxy1G01644 Aquilegia oxysepala HOM05D002109 ORTHO05D002149 5.2e-06 54.3 42 57.1
Lj6g0010433 Lotus japonicus HOM05D002109 ORTHO05D002149 5.2e-06 54.3 68 45.6
MD10G1254100 Malus domestica HOM05D002109 ORTHO05D002149 5.2e-06 54.3 46 52.2
Thecc.02G012400 Theobroma cacao HOM05D002109 ORTHO05D002149 5.2e-06 54.3 46 52.2
Atru.chr10.893 Acer truncatum HOM05D002109 ORTHO05D002149 6.8e-06 53.9 42 57.1
CSS0038948 Camellia sinensis var. sinensis HOM05D002109 ORTHO05D002149 6.8e-06 53.9 45 53.3
DCAR_027862 Daucus carota HOM05D002109 ORTHO05D002149 6.8e-06 53.9 45 53.3
MD05G1274400 Malus domestica HOM05D002109 ORTHO05D002149 8.8e-06 53.5 46 52.2
Nn3g20248 Nelumbo nucifera HOM05D002109 ORTHO05D002149 8.8e-06 53.5 67 44.8
Solyc02g070250.4 Solanum lycopersicum HOM05D002109 ORTHO05D002149 8.8e-06 53.5 42 54.8
PGSC0003DMG400021103 Solanum tuberosum HOM05D002109 ORTHO05D002149 8.8e-06 53.5 42 54.8


User provided reference genes

Program Settings