Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 0.0e+00 1151.3 590 100.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.5e-296 1022.3 591 88.3
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 1.2e-293 1012.7 591 87.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 5.8e-285 983.8 591 85.4
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 8.2e-255 883.6 587 77.2
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 7.2e-251 870.5 585 75.7
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.4e-246 856.3 585 74.4
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 3.1e-246 855.1 585 73.7
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 9.1e-238 827.0 590 71.4
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 4.5e-237 824.7 588 74.0
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 4.7e-234 814.7 621 68.6
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 3.9e-233 811.6 589 68.8
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 7.4e-232 807.4 588 69.4
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 4.1e-230 801.6 595 67.6
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 2.6e-229 798.9 586 68.6
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 1.0e-228 797.0 585 68.2
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 3.2e-227 792.0 596 66.4
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.1e-226 789.3 590 66.9
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 4.4e-224 781.6 586 67.6
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 4.1e-222 775.0 595 65.9
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 9.1e-222 773.9 577 68.1
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.0e-221 772.7 594 65.2
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 4.5e-221 771.5 594 65.0
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.7e-220 769.6 594 64.6
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.0e-217 760.4 591 64.6
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 3.0e-217 758.8 612 64.5
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 3.4e-216 755.4 620 63.7
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.2e-215 752.7 575 66.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 1.1e-214 750.4 594 63.8
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.8e-214 749.6 595 63.0
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.8e-214 749.6 596 64.8
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.7e-213 745.7 590 64.2
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 1.7e-212 743.0 513 71.2
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 3.8e-212 741.9 597 64.5
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.5e-211 740.0 589 63.5
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 1.5e-211 740.0 594 62.8
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 4.2e-211 738.4 584 64.2
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 5.5e-211 738.0 577 64.0
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 1.2e-210 736.9 590 63.6
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 8.8e-209 730.7 590 63.7
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 2.6e-208 729.2 587 63.7
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 9.8e-208 727.2 570 64.7
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.2e-207 726.1 590 63.4
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.4e-206 722.6 598 62.9
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.1e-206 722.2 580 63.8
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 9.2e-206 720.7 522 68.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 9.2e-206 720.7 574 63.9
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 2.7e-205 719.2 576 63.7
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 4.5e-205 718.4 592 62.7
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 4.5e-205 718.4 572 63.6
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.9e-205 718.0 590 62.9
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.0e-204 717.2 588 61.1
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.9e-204 715.7 585 62.4
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 3.8e-204 715.3 588 61.1
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 5.0e-204 714.9 574 63.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 4.3e-203 711.8 588 60.5
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 9.5e-203 710.7 596 60.2
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 1.2e-202 710.3 588 60.2
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 3.6e-202 708.8 596 60.2
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 4.7e-202 708.4 779 50.4
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 3.0e-201 705.7 584 62.5
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 5.2e-201 704.9 587 60.6
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 6.8e-201 704.5 588 59.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 6.8e-201 704.5 582 61.2
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 1.5e-200 703.4 591 59.2
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.6e-200 702.6 591 59.1
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 4.4e-200 701.8 573 60.9
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 2.7e-197 692.6 586 59.9
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 7.8e-197 691.0 585 59.8
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 1.3e-196 690.3 601 58.2
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 8.6e-196 687.6 638 57.4
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 3.3e-195 685.6 599 60.1
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 9.5e-195 684.1 603 60.2
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 9.5e-195 684.1 517 64.2
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.1e-194 682.9 590 59.3
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 8.0e-194 681.0 565 60.9
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.0e-193 680.6 559 60.6
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 6.8e-193 677.9 595 59.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 3.4e-192 675.6 595 58.8
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 5.8e-192 674.9 591 59.9
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.0e-189 666.4 590 58.8
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 6.0e-189 664.8 549 60.5
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 1.7e-188 663.3 582 59.6
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 5.2e-185 651.7 541 61.6
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 5.8e-176 621.7 571 57.3
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.7e-175 620.2 519 60.1
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 6.4e-175 618.2 532 60.2
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 4.1e-174 615.5 601 56.1
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.2e-173 614.0 488 61.9
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 1.7e-172 610.1 573 57.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.1e-170 603.2 573 56.4
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.4e-169 599.7 583 53.0
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.4e-168 595.5 608 52.3
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 5.8e-160 568.5 479 63.0
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.8e-152 542.0 349 73.9
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 6.7e-148 528.5 534 50.7
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 5.7e-131 472.2 594 45.5
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 5.0e-119 432.6 382 56.0
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.6e-117 426.4 443 50.3
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.1e-117 425.6 549 43.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 5.7e-115 419.1 505 45.0
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 3.7e-114 416.4 300 68.3
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.5e-111 405.6 549 41.5
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.5e-110 403.7 544 41.0
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-100 370.5 331 56.5
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 2.0e-88 330.9 210 81.4
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 8.3e-82 308.9 216 72.7
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.6e-77 293.5 281 57.3
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.4e-73 281.6 340 45.6
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.5e-70 270.8 300 45.0
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 5.6e-70 269.6 341 41.9
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 3.6e-69 266.9 359 38.7
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 6.2e-69 266.2 285 53.3
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 1.4e-68 265.0 176 77.3
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.2e-49 200.3 170 60.0
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.6e-40 171.8 123 64.2
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 6.7e-39 166.4 109 68.8
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.1e-37 161.4 115 72.2
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.5e-33 146.7 112 61.6
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 4.3e-30 137.1 248 37.1
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 5.3e-28 130.2 82 74.4
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 1.5e-27 128.6 80 75.0
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 5.8e-27 126.7 102 61.8
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 5.8e-27 126.7 80 73.8
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 3.2e-25 120.9 372 28.0
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 2.7e-24 117.9 100 54.0
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.3e-23 115.5 94 55.3
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 6.7e-23 113.2 566 20.8
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.7e-23 113.2 181 35.4
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.7e-21 107.5 68 73.5
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 5.9e-19 100.1 102 50.0
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.2e-18 98.2 129 40.3
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 5.5e-17 93.6 68 63.2
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.5e-14 84.7 123 40.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 2.8e-13 81.3 88 54.5
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.5e-11 75.5 58 69.0
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 2.0e-11 75.1 467 24.2
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 5.0e-10 70.5 138 35.5
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 3.2e-09 67.8 54 55.6
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 4.2e-09 67.4 61 50.8
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 6.1e-08 63.5 238 24.8
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.8e-07 62.0 166 31.3


User provided reference genes

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