Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 5.0e-74 281.2 159 100.0
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 2.1e-56 222.6 161 82.0
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 5.8e-46 188.0 177 68.9
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 3.9e-42 175.3 165 69.7
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 4.3e-41 171.8 160 70.0
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 5.6e-41 171.4 165 70.3
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 1.2e-40 170.2 163 66.3
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 7.5e-38 161.0 163 68.1
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 1.1e-36 157.1 165 67.3
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 5.1e-34 148.3 170 62.4
TPR.G22173 Trifolium pratense HOM05D007375 ORTHO05D009293 2.8e-32 142.5 106 79.2
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 5.2e-31 138.3 167 60.5
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 2.0e-30 136.3 155 60.6
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 5.8e-30 134.8 163 54.6
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 3.7e-29 132.1 110 73.6
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 1.9e-28 129.8 166 54.8
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 1.9e-28 129.8 179 54.2
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.4e-28 129.4 163 55.2
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 2.4e-28 129.4 157 58.0
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 9.2e-28 127.5 163 54.6
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 9.2e-28 127.5 163 54.6
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 1.2e-27 127.1 165 55.8
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 1.2e-27 127.1 171 56.1
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 2.1e-27 126.3 172 54.7
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 2.7e-27 125.9 172 54.7
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 2.7e-27 125.9 164 58.5
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 3.5e-27 125.6 169 57.4
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 6.0e-27 124.8 166 50.6
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 6.0e-27 124.8 148 52.7
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 6.0e-27 124.8 168 56.0
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 7.8e-27 124.4 171 49.7
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 7.8e-27 124.4 171 49.7
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 7.8e-27 124.4 97 77.3
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 1.0e-26 124.0 178 52.2
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.0e-26 124.0 149 52.3
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.0e-26 124.0 166 57.8
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 1.3e-26 123.6 123 59.3
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 1.7e-26 123.2 157 54.8
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 1.7e-26 123.2 110 60.0
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 2.3e-26 122.9 151 57.0
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 3.0e-26 122.5 160 56.9
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 3.9e-26 122.1 170 55.9
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.9e-26 122.1 172 54.1
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 3.9e-26 122.1 89 67.4
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 3.9e-26 122.1 164 56.7
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 8.6e-26 120.9 117 54.7
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 8.6e-26 120.9 146 51.4
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 1.5e-25 120.2 158 54.4
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.5e-25 120.2 149 57.7
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 1.5e-25 120.2 172 52.9
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 1.9e-25 119.8 103 69.9
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 1.9e-25 119.8 139 58.3
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 1.9e-25 119.8 139 58.3
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 1.9e-25 119.8 139 58.3
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 1.9e-25 119.8 149 57.7
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 2.5e-25 119.4 163 58.3
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 4.3e-25 118.6 168 54.2
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 4.3e-25 118.6 167 55.7
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 5.6e-25 118.2 149 57.0
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 5.6e-25 118.2 100 69.0
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 5.6e-25 118.2 172 49.4
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 7.3e-25 117.9 158 54.4
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 7.3e-25 117.9 172 49.4
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 1.2e-24 117.1 100 68.0
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 1.6e-24 116.7 150 56.0
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 1.6e-24 116.7 153 53.6
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.6e-24 116.7 100 63.0
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.6e-24 116.7 148 50.7
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 2.1e-24 116.3 147 53.7
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 3.6e-24 115.5 166 51.2
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 3.6e-24 115.5 138 52.9
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 6.2e-24 114.8 94 67.0
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 6.2e-24 114.8 153 48.4
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 1.1e-23 114.0 161 50.9
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 3.1e-23 112.5 167 54.5
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 6.8e-23 111.3 161 49.1
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 1.2e-22 110.5 148 50.7
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 1.5e-22 110.2 178 50.0
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 2.6e-22 109.4 156 52.6
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 9.9e-22 107.5 83 73.5
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 1.1e-20 104.0 150 46.7
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 2.4e-20 102.8 142 44.4
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 2.1e-19 99.8 82 59.8
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 3.5e-19 99.0 153 45.1
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 7.8e-19 97.8 222 36.0
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 2.3e-18 96.3 96 62.5
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 8.7e-18 94.4 132 43.2
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 5.6e-17 91.7 80 68.8
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 1.1e-15 87.4 80 66.2
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 5.3e-15 85.1 69 63.8
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 7.6e-14 81.3 67 64.2
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 9.9e-14 80.9 158 46.8
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 1.1e-12 77.4 39 79.5
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 1.4e-12 77.0 112 45.5
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 1.4e-12 77.0 114 48.2
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 3.2e-12 75.9 122 45.1
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 1.5e-09 67.0 112 47.3
Prupe.6G149200 Prunus persica HOM05D007375 ORTHO05D009293 6.9e-07 58.2 104 43.3
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 7.6e-06 54.7 38 71.1
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 9.9e-06 54.3 28 75.0


User provided reference genes

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