Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 4.7e-82 308.1 197 100.0
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 2.2e-63 246.1 189 70.9
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 8.4e-63 244.2 189 76.2
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 3.8e-55 218.8 183 67.2
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 3.2e-54 215.7 189 65.1
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 9.3e-54 214.2 189 59.8
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 8.7e-52 207.6 189 63.0
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 7.4e-51 204.5 192 56.2
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 8.1e-50 201.1 194 67.5
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 4.9e-47 191.8 183 55.7
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 4.9e-47 191.8 183 55.7
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 3.2e-46 189.1 189 68.3
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 3.0e-44 182.6 189 50.3
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 3.0e-44 182.6 183 50.8
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 5.1e-44 181.8 183 50.8
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 5.7e-43 178.3 183 49.2
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 9.6e-43 177.6 183 49.2
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.6e-42 176.8 187 48.1
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 2.1e-42 176.4 183 48.6
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 2.8e-42 176.0 193 47.7
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 2.8e-42 176.0 192 46.9
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 2.8e-42 176.0 205 45.4
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 4.8e-42 175.3 183 49.2
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 4.8e-42 175.3 186 48.9
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 6.2e-42 174.9 189 48.7
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 8.2e-42 174.5 205 45.9
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 1.8e-41 173.3 199 47.7
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 2.4e-41 172.9 189 47.1
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 5.3e-41 171.8 196 44.4
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 5.3e-41 171.8 196 44.4
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 5.3e-41 171.8 196 44.4
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 9.0e-41 171.0 183 54.1
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 9.0e-41 171.0 192 47.9
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.2e-40 170.6 196 44.9
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 1.5e-40 170.2 184 47.8
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 3.4e-40 169.1 196 44.4
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 4.5e-40 168.7 197 45.2
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 4.5e-40 168.7 197 45.2
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 4.5e-40 168.7 191 47.1
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 5.8e-40 168.3 192 46.4
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 7.6e-40 167.9 186 47.3
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-39 167.2 186 46.8
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.3e-39 167.2 186 47.8
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.7e-39 166.8 186 46.8
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 1.7e-39 166.8 183 46.4
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.9e-39 166.0 183 51.9
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.9e-39 166.0 186 46.8
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 3.8e-39 165.6 183 53.0
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 3.8e-39 165.6 187 48.7
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 5.0e-39 165.2 203 55.2
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 5.0e-39 165.2 183 56.3
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 5.0e-39 165.2 188 45.2
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 5.0e-39 165.2 197 45.7
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 6.5e-39 164.9 203 55.2
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 7.1e-38 161.4 192 45.3
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 1.2e-37 160.6 187 45.5
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 2.1e-37 159.8 183 50.3
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 7.9e-37 157.9 189 44.4
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 1.0e-36 157.5 188 44.7
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.3e-36 157.1 183 43.2
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-35 154.1 190 44.2
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 8.2e-34 147.9 193 43.5
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.4e-33 147.1 187 38.0
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 1.4e-33 147.1 187 45.5
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 2.4e-33 146.4 194 44.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 3.1e-33 146.0 177 46.3
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 9.0e-33 144.4 187 40.1
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.5e-32 143.7 189 41.3
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.6e-32 142.9 195 43.1
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 4.5e-32 142.1 191 41.4
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 6.5e-31 138.3 185 39.5
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 8.5e-31 137.9 192 37.0
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.4e-30 137.1 196 40.3
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 1.9e-30 136.7 188 39.9
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 3.2e-30 136.0 191 42.4
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 3.2e-30 136.0 189 39.7
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 5.5e-30 135.2 190 39.5
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 1.2e-29 134.0 189 39.7
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 2.1e-29 133.3 192 35.4
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 4.6e-29 132.1 189 41.3
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 7.9e-29 131.3 193 38.3
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.4e-28 130.6 187 40.6
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 3.9e-28 129.0 197 38.1
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.9e-28 129.0 193 38.3
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 6.7e-28 128.3 193 38.3
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 2.0e-27 126.7 187 39.0
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 3.3e-27 125.9 194 38.1
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 7.4e-27 124.8 190 43.2
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.2e-26 123.2 193 44.0
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 2.8e-26 122.9 202 36.6
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.8e-25 120.2 197 34.5
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 9.1e-25 117.9 188 38.3
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 1.2e-24 117.5 178 42.1
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.5e-24 117.1 192 37.5
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.0e-24 116.7 177 37.9
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 3.4e-24 115.9 115 63.5
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 5.9e-24 115.2 196 34.2
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 5.9e-24 115.2 188 37.8
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 4.2e-22 109.0 183 42.6
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 9.4e-22 107.8 189 36.5
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 2.6e-19 99.8 185 33.5
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 2.0e-16 90.1 196 33.7
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.1e-06 57.8 176 27.3
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 9.4e-06 54.7 193 24.4


User provided reference genes

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