Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g084330 Medicago truncatula HOM05D009657 ORTHO05D005763 4.4e-55 218.0 134 100.0
LjContig00357g0014262 Lotus japonicus HOM05D009657 ORTHO05D005763 4.6e-20 101.7 142 62.0
arahy.Tifrunner.gnm1.ann1.5E44W3 Arachis hypogaea HOM05D008132 ORTHO05D005763 8.6e-19 97.4 129 55.0
LjContig00357g0002258 Lotus japonicus HOM05D016758 ORTHO05D005763 1.3e-14 83.6 134 56.7
Glyma.14G051900 Glycine max HOM05D016758 ORTHO05D005763 1.9e-13 79.7 152 50.0
Medtr5g084540 Medicago truncatula HOM05D009657 ORTHO05D005763 1.2e-12 77.0 62 72.6
Oeu022674.1 Olea europaea HOM05D008132 ORTHO05D005763 1.2e-12 77.0 130 52.3
Glyma.14G052000 Glycine max HOM05D016758 ORTHO05D005763 2.1e-12 76.3 143 55.2
Nn1g09274 Nelumbo nucifera HOM05D008132 ORTHO05D005763 2.1e-12 76.3 134 53.0
Medtr5g084460 Medicago truncatula HOM05D009657 ORTHO05D005763 6.0e-12 74.7 58 72.4
QL08p029862 Quercus lobata HOM05D008132 ORTHO05D005763 7.8e-12 74.3 134 53.0
Psat2g027000 Pisum sativum HOM05D009657 ORTHO05D005763 1.3e-11 73.6 58 72.4
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.7e-11 73.2 146 50.7
Psat2g028440 Pisum sativum HOM05D009657 ORTHO05D005763 1.7e-11 73.2 64 64.1
TPR.G17687 Trifolium pratense HOM05D009657 ORTHO05D005763 1.7e-11 73.2 58 75.9
Cpa.g.sc132.70 Carica papaya HOM05D008132 ORTHO05D005763 3.0e-11 72.4 136 50.0
Cpa.g.sc132.73 Carica papaya HOM05D008132 ORTHO05D005763 3.0e-11 72.4 136 50.0
Medtr5g084570 Medicago truncatula HOM05D009657 ORTHO05D005763 3.0e-11 72.4 131 53.4
Psat2g026840 Pisum sativum HOM05D009657 ORTHO05D005763 3.0e-11 72.4 58 70.7
Psat2g027040 Pisum sativum HOM05D009657 ORTHO05D005763 3.9e-11 72.0 63 68.3
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 5.1e-11 71.6 133 51.9
Psat2g026880 Pisum sativum HOM05D009657 ORTHO05D005763 6.6e-11 71.2 58 69.0
Ca_06042_v3 Cicer arietinum L. HOM05D009657 ORTHO05D005763 1.1e-10 70.5 58 70.7
Phvul.008G216600 Phaseolus vulgaris HOM05D016758 ORTHO05D005763 1.5e-10 70.1 150 50.0
Psat2g028040 Pisum sativum HOM05D009657 ORTHO05D005763 4.3e-10 68.6 65 66.2
C03p55470 Brassica napus HOM05D008158 ORTHO05D010323 7.3e-10 67.8 127 48.8
Psat2g028320 Pisum sativum HOM05D009657 ORTHO05D005763 7.3e-10 67.8 58 63.8
arahy.Tifrunner.gnm1.ann1.V70XEM Arachis hypogaea HOM05D064469 ORTHO05D005763 9.6e-10 67.4 122 46.7
Thecc.01G236900 Theobroma cacao HOM05D008132 ORTHO05D005763 2.1e-09 66.2 138 53.6
TPR.G17676 Trifolium pratense HOM05D009657 ORTHO05D005763 2.1e-09 66.2 64 67.2
BcaB08g34503 Brassica carinata HOM05D008158 ORTHO05D010323 2.8e-09 65.9 129 51.2
A03p44640 Brassica napus HOM05D008158 ORTHO05D010323 2.8e-09 65.9 129 51.2
PGR042G2058 Punica granatum HOM05D008132 ORTHO05D005763 4.7e-09 65.1 133 51.1
Medtr5g084530 Medicago truncatula HOM05D009657 ORTHO05D005763 6.2e-09 64.7 54 68.5
arahy.Tifrunner.gnm1.ann1.4VA7BX Arachis hypogaea HOM05D064469 ORTHO05D005763 8.1e-09 64.3 122 39.3
CARHR103240 Cardamine hirsuta HOM05D008158 ORTHO05D010323 8.1e-09 64.3 126 49.2
Psat2g028200 Pisum sativum HOM05D009657 ORTHO05D005763 1.1e-08 63.9 57 61.4
GSVIVG01030407001 Vitis vinifera HOM05D008132 ORTHO05D005763 1.4e-08 63.5 170 44.1
BcaC01g03159 Brassica carinata HOM05D008158 ORTHO05D010323 1.8e-08 63.2 129 50.4
Medtr5g084470 Medicago truncatula HOM05D009657 ORTHO05D005763 1.8e-08 63.2 54 66.7
CiPaw.03G275800 Carya illinoinensis HOM05D052008 ORTHO05D005763 3.1e-08 62.4 132 43.9
Cc03_g08950 Coffea canephora HOM05D008132 ORTHO05D005763 3.1e-08 62.4 132 54.5
Gorai.006G083000 Gossypium raimondii HOM05D008132 ORTHO05D005763 3.1e-08 62.4 132 49.2
Psat2g029680 Pisum sativum HOM05D009657 ORTHO05D005763 3.1e-08 62.4 57 64.9
VMungo0647G2202 Vigna mungo HOM05D016758 ORTHO05D005763 5.2e-08 61.6 148 48.6
Psat2g028520 Pisum sativum HOM05D009657 ORTHO05D005763 6.8e-08 61.2 57 63.2
AT2G05540 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 8.9e-08 60.8 136 49.3
Psat2g029520 Pisum sativum HOM05D009657 ORTHO05D005763 8.9e-08 60.8 57 63.2
ClCG02G002460 Citrullus lanatus HOM05D016168 ORTHO05D005763 1.2e-07 60.5 130 49.2
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 2.0e-07 59.7 128 51.6
Actinidia09763 Actinidia chinensis HOM05D008132 ORTHO05D005763 2.6e-07 59.3 161 38.5
CANSAT64G2794 Cannabis sativa HOM05D008132 ORTHO05D005763 2.6e-07 59.3 129 40.3
CsaV3_7G002960 Cucumis sativus L. HOM05D016168 ORTHO05D005763 4.4e-07 58.5 123 56.9
Migut.G00657 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.4e-07 58.5 133 36.8
Migut.G00827 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.4e-07 58.5 145 48.3
Migut.G01101 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.4e-07 58.5 133 36.8
Migut.G01155 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.4e-07 58.5 139 45.3
Migut.O00629 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.4e-07 58.5 133 36.8
PGR142G4197 Punica granatum HOM05D008132 ORTHO05D005763 4.4e-07 58.5 123 52.0
Dinv05855 Davidia involucrata HOM05D016168 ORTHO05D005763 5.8e-07 58.2 134 53.0
COL.COLO4_04941 Corchorus olitorius HOM05D008132 ORTHO05D005763 7.6e-07 57.8 149 46.3
COL.COLO4_36679 Corchorus olitorius HOM05D008132 ORTHO05D005763 7.6e-07 57.8 134 50.0
Gohir.D07G195400 Gossypium hirsutum HOM05D008132 ORTHO05D005763 7.6e-07 57.8 134 49.3
CANSAT56G4537 Cannabis sativa HOM05D008132 ORTHO05D005763 9.9e-07 57.4 131 50.4
Psat0s2407g0280 Pisum sativum HOM05D009657 ORTHO05D005763 9.9e-07 57.4 68 54.4
PGR042G0640 Punica granatum HOM05D008132 ORTHO05D005763 9.9e-07 57.4 132 43.2
Lalb_Chr04g0258791 Lupinus albus HOM05D021502 ORTHO05D005763 1.3e-06 57.0 136 36.0
Nn1g09275 Nelumbo nucifera HOM05D008132 ORTHO05D005763 1.3e-06 57.0 134 43.3
Nn3g19166 Nelumbo nucifera HOM05D008132 ORTHO05D005763 1.3e-06 57.0 130 46.2
Nitab4.5_0000037g0280 Nicotiana tabacum HOM05D008132 ORTHO05D005763 1.3e-06 57.0 131 43.5
Oeu022673.1 Olea europaea HOM05D008132 ORTHO05D005763 1.3e-06 57.0 166 47.0
Psat0s2407g0200 Pisum sativum HOM05D009657 ORTHO05D005763 1.3e-06 57.0 51 66.7
Psat2g026400 Pisum sativum HOM05D009657 ORTHO05D005763 1.3e-06 57.0 56 60.7
Psat2g028400 Pisum sativum HOM05D009657 ORTHO05D005763 1.7e-06 56.6 60 61.7
COL.COLO4_04214 Corchorus olitorius HOM05D008132 ORTHO05D005763 2.2e-06 56.2 140 47.9
Peaxi162Scf00286g00820 Petunia axillaris HOM05D008132 ORTHO05D005763 2.2e-06 56.2 131 43.5
Sopen09g035750 Solanum pennellii HOM05D012878 ORTHO05D005763 2.2e-06 56.2 140 49.3
Atru.chr6.3312 Acer truncatum HOM05D008132 ORTHO05D005763 2.9e-06 55.8 115 45.2
Migut.G00825 Erythranthe guttata HOM05D008132 ORTHO05D005763 4.9e-06 55.1 167 40.7
PSO339G4592 Papaver somniferum HOM05D011802 ORTHO05D014248 4.9e-06 55.1 133 42.9
Psat0s4390g0080 Pisum sativum HOM05D009657 ORTHO05D005763 4.9e-06 55.1 67 58.2
MSTRG.9649 Avicennia marina HOM05D008132 ORTHO05D005763 6.4e-06 54.7 129 44.2
EL10Ac9g22777 Beta vulgaris HOM05D008132 ORTHO05D005763 6.4e-06 54.7 152 41.4
COL.COLO4_04942 Corchorus olitorius HOM05D008132 ORTHO05D005763 6.4e-06 54.7 136 49.3
Thecc.01G186700 Theobroma cacao HOM05D008132 ORTHO05D005763 6.4e-06 54.7 135 41.5
RcHm_v2.0_Chr2g0157371 Rosa chinensis HOM05D019965 ORTHO05D005763 8.4e-06 54.3 127 45.7


User provided reference genes

Program Settings