Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g082980 Medicago truncatula HOM05D003204 ORTHO05D003566 2.2e-60 235.3 111 100.0
Medtr4g131500 Medicago truncatula HOM05D003204 ORTHO05D003566 1.1e-11 73.6 39 87.2
Duzib168G0965 Durio zibethinus HOM05D003204 ORTHO05D003566 1.2e-10 70.1 53 60.4
Gohir.A05G051200 Gossypium hirsutum HOM05D003204 ORTHO05D003566 1.6e-10 69.7 39 74.4
Gorai.009G054500 Gossypium raimondii HOM05D003204 ORTHO05D003566 1.6e-10 69.7 39 74.4
TPR.G37026 Trifolium pratense HOM05D003204 ORTHO05D003566 6.1e-10 67.8 40 72.5
CiPaw.16G115300 Carya illinoinensis HOM05D003204 ORTHO05D003566 7.9e-10 67.4 53 56.6
Haze_19240 Corylus avellana HOM05D003204 ORTHO05D003566 1.0e-09 67.0 53 56.6
TWI34G0588 Tripterygium wilfordii HOM05D003204 ORTHO05D003566 1.0e-09 67.0 39 71.8
Cfa020852 Carpinus fangiana HOM05D003204 ORTHO05D003566 1.4e-09 66.6 53 56.6
CANSAT11G2588 Cannabis sativa HOM05D003204 ORTHO05D003566 1.8e-09 66.2 59 52.5
Duzib187G0775 Durio zibethinus HOM05D003204 ORTHO05D003566 2.3e-09 65.9 52 59.6
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 2.3e-09 65.9 53 58.5
Lj7A454T32 Lonicera japonica HOM05D003204 ORTHO05D003566 3.0e-09 65.5 53 54.7
QL02p092516 Quercus lobata HOM05D003204 ORTHO05D003566 3.0e-09 65.5 52 57.7
Thecc.09G034200 Theobroma cacao HOM05D003204 ORTHO05D003566 3.0e-09 65.5 53 56.6
Psat4g008960 Pisum sativum HOM05D003204 ORTHO05D003566 3.9e-09 65.1 86 45.3
TAR626G1088 Trochodendron aralioides HOM05D003204 ORTHO05D003566 3.9e-09 65.1 53 52.8
PGR142G3740 Punica granatum HOM05D003204 ORTHO05D003566 5.1e-09 64.7 53 52.8
CiPaw.15G173600 Carya illinoinensis HOM05D003204 ORTHO05D003566 6.7e-09 64.3 53 54.7
MELO3C010244.2 Cucumis melo HOM05D003204 ORTHO05D003566 6.7e-09 64.3 87 41.4
Sed0002423 Sechium edule HOM05D003204 ORTHO05D003566 6.7e-09 64.3 86 41.9
TWI63G1701 Tripterygium wilfordii HOM05D003204 ORTHO05D003566 6.7e-09 64.3 39 69.2
Cpa.g.sc43.125 Carica papaya HOM05D003204 ORTHO05D003566 8.8e-09 63.9 53 52.8
Hma1.2p1_0028F.1_g017340 Hydrangea macrophylla HOM05D003204 ORTHO05D003566 8.8e-09 63.9 53 54.7
CANSAT11G0225 Cannabis sativa HOM05D003204 ORTHO05D003566 1.1e-08 63.5 59 50.8
Oeu050478.2 Olea europaea HOM05D003204 ORTHO05D003566 1.1e-08 63.5 45 60.0
CsaV3_1G028710 Cucumis sativus L. HOM05D003204 ORTHO05D003566 1.9e-08 62.8 87 41.4
Lj4g0022022 Lotus japonicus HOM05D003204 ORTHO05D003566 2.5e-08 62.4 53 54.7
Potri.018G110800 Populus trichocarpa HOM05D003204 ORTHO05D003566 2.5e-08 62.4 53 50.9
Eucgr.C04044 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.3e-08 62.0 87 42.5
AUR62011274 Chenopodium quinoa HOM05D003204 ORTHO05D003566 4.3e-08 61.6 53 52.8
AUR62039740 Chenopodium quinoa HOM05D003204 ORTHO05D003566 4.3e-08 61.6 53 52.8
Glyma.15G205900 Glycine max HOM05D003204 ORTHO05D003566 4.3e-08 61.6 38 71.1
Nitab4.5_0001094g0130 Nicotiana tabacum HOM05D003204 ORTHO05D003566 4.3e-08 61.6 39 64.1
Psat4g009000 Pisum sativum HOM05D003204 ORTHO05D003566 4.3e-08 61.6 56 57.1
COL.COLO4_18771 Corchorus olitorius HOM05D003204 ORTHO05D003566 5.7e-08 61.2 53 52.8
Dinv41403 Davidia involucrata HOM05D003204 ORTHO05D003566 7.4e-08 60.8 53 50.9
Eucgr.L00627 Eucalyptus grandis HOM05D003204 ORTHO05D003566 7.4e-08 60.8 53 54.7
PGR142G1361 Punica granatum HOM05D003204 ORTHO05D003566 7.4e-08 60.8 53 50.9
Sabra18G0093500 Salix brachista HOM05D003204 ORTHO05D003566 7.4e-08 60.8 53 50.9
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 9.7e-08 60.5 51 54.9
Solyc07g005210.3 Solanum lycopersicum HOM05D003204 ORTHO05D003566 1.3e-07 60.1 38 65.8
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 1.3e-07 60.1 38 65.8
PGSC0003DMG400003187 Solanum tuberosum HOM05D003204 ORTHO05D003566 1.3e-07 60.1 45 60.0
Dinv42888 Davidia involucrata HOM05D003204 ORTHO05D003566 1.7e-07 59.7 53 49.1
Dinv43212 Davidia involucrata HOM05D003204 ORTHO05D003566 1.7e-07 59.7 53 49.1
FAN23G2945 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.7e-07 59.7 39 64.1
FAN28G0838 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.7e-07 59.7 39 64.1
Hma1.2p1_0222F.1_g093250 Hydrangea macrophylla HOM05D003204 ORTHO05D003566 1.7e-07 59.7 39 61.5
Lsat_1_v5_gn_8_61241 Lactuca sativa HOM05D003204 ORTHO05D003566 1.7e-07 59.7 39 64.1
Nitab4.5_0002315g0020 Nicotiana tabacum HOM05D003204 ORTHO05D003566 1.7e-07 59.7 39 61.5
Rhsim01G0044000 Rhododendron simsii HOM05D003204 ORTHO05D003566 1.7e-07 59.7 88 39.8
Peaxi162Scf00347g00625 Petunia axillaris HOM05D003204 ORTHO05D003566 2.2e-07 59.3 39 64.1
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 2.8e-07 58.9 38 63.2
DCAR_019372 Daucus carota HOM05D003204 ORTHO05D003566 2.8e-07 58.9 38 60.5
Manes.14G141400 Manihot esculenta HOM05D003204 ORTHO05D003566 2.8e-07 58.9 53 47.2
Medtr4g131390 Medicago truncatula HOM05D003204 ORTHO05D003566 2.8e-07 58.9 39 64.1
PSO384G3133 Papaver somniferum HOM05D003204 ORTHO05D003566 2.8e-07 58.9 39 59.0
Psat4g009200 Pisum sativum HOM05D003204 ORTHO05D003566 2.8e-07 58.9 40 65.0
Actinidia04280 Actinidia chinensis HOM05D003204 ORTHO05D003566 3.7e-07 58.5 88 38.6
Eucgr.C00377 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.7e-07 58.5 90 42.2
Medtr4g131400 Medicago truncatula HOM05D003204 ORTHO05D003566 3.7e-07 58.5 39 64.1
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 3.7e-07 58.5 52 55.8
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 3.7e-07 58.5 52 55.8
CAN.G520.7 Capsicum annuum HOM05D003204 ORTHO05D003566 4.8e-07 58.2 39 61.5
Thecc.09G034400 Theobroma cacao HOM05D003204 ORTHO05D003566 4.8e-07 58.2 74 44.6
arahy.Tifrunner.gnm1.ann1.BQEK3T Arachis hypogaea HOM05D003204 ORTHO05D003566 6.3e-07 57.8 37 62.2
arahy.Tifrunner.gnm1.ann1.L7UW02 Arachis hypogaea HOM05D003204 ORTHO05D003566 6.3e-07 57.8 37 62.2
Cc06_g15300 Coffea canephora HOM05D003204 ORTHO05D003566 6.3e-07 57.8 53 50.9
Peaxi162Scf00108g00615 Petunia axillaris HOM05D003204 ORTHO05D003566 6.3e-07 57.8 39 61.5
Peaxi162Scf00347g00618 Petunia axillaris HOM05D003204 ORTHO05D003566 6.3e-07 57.8 46 54.3
CSS0034071 Camellia sinensis var. sinensis HOM05D003204 ORTHO05D003566 8.2e-07 57.4 39 56.4
CDE05G3171 Ceratophyllum demersum HOM05D003204 ORTHO05D003566 8.2e-07 57.4 39 56.4
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 8.2e-07 57.4 53 50.9
arahy.Tifrunner.gnm1.ann1.U4K9V9 Arachis hypogaea HOM05D003204 ORTHO05D003566 1.1e-06 57.0 53 52.8
Ca_21108_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 1.1e-06 57.0 39 61.5
ClCG06G012220 Citrullus lanatus HOM05D003204 ORTHO05D003566 1.1e-06 57.0 53 47.2
MBI15_g09158_MAGBIO Magnolia biondii HOM05D003204 ORTHO05D003566 1.1e-06 57.0 88 39.8
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 1.1e-06 57.0 38 63.2
Nn8g39800 Nelumbo nucifera HOM05D003204 ORTHO05D003566 1.1e-06 57.0 39 53.8
CSS0013331 Camellia sinensis var. sinensis HOM05D003204 ORTHO05D003566 1.4e-06 56.6 88 38.6
Eucgr.C00376 Eucalyptus grandis HOM05D003204 ORTHO05D003566 1.4e-06 56.6 40 67.5
MBI15_g14741_MAGBIO Magnolia biondii HOM05D003204 ORTHO05D003566 1.4e-06 56.6 88 38.6
Nitab4.5_0001478g0150 Nicotiana tabacum HOM05D003204 ORTHO05D003566 1.4e-06 56.6 39 59.0
Zm00001eb247000 Zea mays HOM05D003204 ORTHO05D003566 1.4e-06 56.6 59 42.4
CAN.G520.3 Capsicum annuum HOM05D003204 ORTHO05D003566 1.8e-06 56.2 39 59.0
CAN.G551.27 Capsicum annuum HOM05D003204 ORTHO05D003566 1.8e-06 56.2 52 53.8
FAN19G1614 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.8e-06 56.2 38 63.2
FAN26G1065 Fragaria x ananassa HOM05D003204 ORTHO05D003566 1.8e-06 56.2 38 63.2
Psat1g022240 Pisum sativum HOM05D003204 ORTHO05D003566 1.8e-06 56.2 39 56.4
Rhsim01G0043700 Rhododendron simsii HOM05D003204 ORTHO05D003566 1.8e-06 56.2 67 43.3
RcHm_v2.0_Chr2g0086051 Rosa chinensis HOM05D003204 ORTHO05D003566 1.8e-06 56.2 38 63.2
PGSC0003DMG400007892 Solanum tuberosum HOM05D003204 ORTHO05D003566 1.8e-06 56.2 52 57.7
SGA_v2.0_scaffold206G41820 Striga asiatica HOM05D003204 ORTHO05D003566 1.8e-06 56.2 53 50.9
TAR625G0968 Trochodendron aralioides HOM05D003204 ORTHO05D003566 2.4e-06 55.8 38 60.5
Os02g0612900 Oryza sativa ssp. japonica HOM05D003204 ORTHO05D003566 3.1e-06 55.5 59 45.8
Hund00708 Selenicereus undatus HOM05D003204 ORTHO05D003566 3.1e-06 55.5 53 47.2
Ah.09g226600 Amaranthus hybridus HOM05D003204 ORTHO05D003566 4.1e-06 55.1 53 47.2
Aqoxy7G03469_Aqoxy7G03470 Aquilegia oxysepala HOM05D003204 ORTHO05D003566 4.1e-06 55.1 50 50.0
CDE02G3940 Ceratophyllum demersum HOM05D003204 ORTHO05D003566 4.1e-06 55.1 39 53.8
Duzib168G0191 Durio zibethinus HOM05D003204 ORTHO05D003566 4.1e-06 55.1 37 62.2
Glyma.09G098900 Glycine max HOM05D003204 ORTHO05D003566 4.1e-06 55.1 38 63.2
Glyma.13G155200 Glycine max HOM05D003204 ORTHO05D003566 4.1e-06 55.1 38 55.3
PSO339G4113 Papaver somniferum HOM05D003204 ORTHO05D003566 4.1e-06 55.1 39 53.8
Prupe.7G259600 Prunus persica HOM05D003204 ORTHO05D003566 4.1e-06 55.1 38 63.2
Eucgr.C00375 Eucalyptus grandis HOM05D003204 ORTHO05D003566 5.3e-06 54.7 40 65.0
vmacro06095 Vaccinium macrocarpon HOM05D003204 ORTHO05D003566 5.3e-06 54.7 53 47.2
DCAR_017902 Daucus carota HOM05D003204 ORTHO05D003566 6.9e-06 54.3 39 56.4
Gohir.A07G026000 Gossypium hirsutum HOM05D003204 ORTHO05D003566 6.9e-06 54.3 39 61.5
Lalb_Chr13g0300991 Lupinus albus HOM05D003204 ORTHO05D003566 6.9e-06 54.3 38 60.5
Oeu026544.2 Olea europaea HOM05D003204 ORTHO05D003566 6.9e-06 54.3 38 65.8
vmacro13041 Vaccinium macrocarpon HOM05D003204 ORTHO05D003566 6.9e-06 54.3 38 55.3
VMungo1215G3281 Vigna mungo HOM05D003204 ORTHO05D003566 6.9e-06 54.3 38 55.3
Actinidia04278 Actinidia chinensis HOM05D003204 ORTHO05D003566 9.1e-06 53.9 39 53.8
EL10Ac8g18842 Beta vulgaris HOM05D003204 ORTHO05D003566 9.1e-06 53.9 39 53.8
Eucgr.C00370 Eucalyptus grandis HOM05D003204 ORTHO05D003566 9.1e-06 53.9 53 45.3
Gohir.D07G029900 Gossypium hirsutum HOM05D003204 ORTHO05D003566 9.1e-06 53.9 39 61.5
Gorai.001G031100 Gossypium raimondii HOM05D003204 ORTHO05D003566 9.1e-06 53.9 39 61.5


User provided reference genes

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