Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g081780 Medicago truncatula HOM05D003256 ORTHO05D001441 3.2e-95 351.7 168 100.0
TPR.G8048 Trifolium pratense HOM05D003256 ORTHO05D001441 2.2e-80 302.4 167 86.2
Glyma.14G062400 Glycine max HOM05D003256 ORTHO05D001441 7.1e-79 297.4 166 83.7
Phvul.008G226800 Phaseolus vulgaris HOM05D003256 ORTHO05D001441 3.5e-78 295.0 163 83.4
Psat2g035280 Pisum sativum HOM05D003256 ORTHO05D001441 3.5e-78 295.0 156 88.5
LjContig00357g0006095 Lotus japonicus HOM05D003256 ORTHO05D001441 6.0e-78 294.3 167 83.2
Manes.07G124900 Manihot esculenta HOM05D003256 ORTHO05D001441 3.0e-69 265.4 160 76.2
Dinv34426 Davidia involucrata HOM05D003256 ORTHO05D001441 2.5e-68 262.3 159 76.1
Thecc.10G026900 Theobroma cacao HOM05D003256 ORTHO05D001441 7.4e-68 260.8 163 74.2
Potri.008G063900 Populus trichocarpa HOM05D003256 ORTHO05D001441 6.9e-66 254.2 163 73.0
CSS0012310 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D001441 1.2e-65 253.4 160 73.8
CSS0030450 Camellia sinensis var. sinensis HOM05D003256 ORTHO05D001441 1.2e-65 253.4 160 73.8
COL.COLO4_25668 Corchorus olitorius HOM05D003256 ORTHO05D001441 3.4e-65 251.9 158 71.5
Atru.chr12.248 Acer truncatum HOM05D003256 ORTHO05D001441 5.9e-65 251.1 155 74.2
Ciclev10033656m.g Citrus clementina HOM05D003256 ORTHO05D001441 1.0e-64 250.4 155 74.2
Prupe.2G245700 Prunus persica HOM05D003256 ORTHO05D005659 1.0e-64 250.4 162 71.0
MD01G1146400 Malus domestica HOM05D003256 ORTHO05D001441 2.9e-64 248.8 163 70.6
Cpa.g.sc19.220 Carica papaya HOM05D003256 ORTHO05D001441 5.0e-64 248.1 161 73.3
TAR633G0704 Trochodendron aralioides HOM05D003256 ORTHO05D001441 6.5e-64 247.7 160 71.2
Gorai.011G279500 Gossypium raimondii HOM05D003256 ORTHO05D001441 8.4e-64 247.3 155 71.6
QL08p062603 Quercus lobata HOM05D003256 ORTHO05D001441 1.1e-63 246.9 159 71.7
Eucgr.G03027 Eucalyptus grandis HOM05D003256 ORTHO05D001441 1.4e-63 246.5 159 73.0
Hma1.2p1_0026F.1_g016990 Hydrangea macrophylla HOM05D003256 ORTHO05D001441 3.2e-63 245.4 162 71.0
FvH4_7g23970 Fragaria vesca HOM05D003256 ORTHO05D001441 7.2e-63 244.2 160 69.4
Gohir.A10G229100 Gossypium hirsutum HOM05D003256 ORTHO05D001441 1.2e-62 243.4 155 70.3
FAN10G1586 Fragaria x ananassa HOM05D003256 ORTHO05D001441 1.6e-62 243.0 159 69.2
TWI53G0608 Tripterygium wilfordii HOM05D003256 ORTHO05D001441 1.6e-62 243.0 160 70.6
Gohir.D10G243100 Gossypium hirsutum HOM05D003256 ORTHO05D001441 2.1e-62 242.7 155 70.3
Aqoxy1G00709 Aquilegia oxysepala HOM05D003256 ORTHO05D001441 2.7e-62 242.3 156 70.5
CsaV3_5G008890 Cucumis sativus L. HOM05D003256 ORTHO05D001441 3.5e-62 241.9 160 68.8
FAN06G1448 Fragaria x ananassa HOM05D003256 ORTHO05D005659 3.5e-62 241.9 159 69.2
RcHm_v2.0_Chr1g0369311 Rosa chinensis HOM05D003256 ORTHO05D001441 3.5e-62 241.9 160 69.4
DCAR_011785 Daucus carota HOM05D003256 ORTHO05D005659 6.1e-62 241.1 158 67.7
MELO3C025149.2 Cucumis melo HOM05D003256 ORTHO05D005659 7.9e-62 240.7 154 70.8
FAN03G3030 Fragaria x ananassa HOM05D003256 ORTHO05D001441 1.3e-61 240.0 159 68.6
Peaxi162Scf00401g00006 Petunia axillaris HOM05D000080 ORTHO05D000053 1.8e-61 239.6 159 69.8
Cfa001371 Carpinus fangiana HOM05D003256 ORTHO05D001441 3.0e-61 238.8 150 74.7
Sed0024300 Sechium edule HOM05D003256 ORTHO05D001441 1.9e-60 236.1 160 66.2
PGR142G3668 Punica granatum HOM05D003256 ORTHO05D001441 2.5e-60 235.7 152 68.4
ClCG07G003930 Citrullus lanatus HOM05D003256 ORTHO05D001441 3.3e-60 235.3 154 68.8
Lsat_1_v5_gn_8_12360 Lactuca sativa HOM05D003256 ORTHO05D001441 3.3e-60 235.3 152 75.0
Oeu003436.1 Olea europaea HOM05D003256 ORTHO05D001441 1.3e-59 233.4 151 69.5
Migut.F01435 Erythranthe guttata HOM05D003256 ORTHO05D001441 3.1e-58 228.8 161 64.6
CiPaw.02G189500 Carya illinoinensis HOM05D003256 ORTHO05D001441 1.7e-56 223.0 161 67.1
ATR0618G299 Amborella trichopoda HOM05D003256 ORTHO05D001441 1.1e-55 220.3 145 66.9
HanXRQChr08g0222221 Helianthus annuus HOM05D003256 ORTHO05D001441 3.9e-45 185.3 123 71.5
FAN01G1344 Fragaria x ananassa HOM05D003256 ORTHO05D005659 2.8e-43 179.1 160 56.9
Zm00001eb298000 Zea mays HOM05D003256 ORTHO05D001441 2.4e-42 176.0 150 51.3
Potri.010G193200 Populus trichocarpa HOM05D003256 ORTHO05D001441 8.8e-37 157.5 96 74.0
Glyma.02G254100 Glycine max HOM05D003256 ORTHO05D001441 2.2e-32 142.9 81 77.8
SMO367G0825 Selaginella moellendorffii HOM05D003256 ORTHO05D001441 1.6e-30 136.7 144 40.3
Mapoly0029s0035 Marchantia polymorpha HOM05D001922 ORTHO05D001441 1.6e-25 120.2 153 34.6
SMO146G0127 Selaginella moellendorffii HOM05D003256 ORTHO05D001441 5.2e-21 105.1 157 35.0
SEGI_03891 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 5.7e-20 101.7 156 35.9
SMO203G0066 Selaginella moellendorffii HOM05D001922 ORTHO05D001441 1.3e-19 100.5 127 37.0
MD08G1112100 Malus domestica HOM05D001922 ORTHO05D001441 1.7e-19 100.1 155 34.8
TWI34G0875 Tripterygium wilfordii HOM05D001922 ORTHO05D001441 8.3e-19 97.8 150 33.3
QL12p041108 Quercus lobata HOM05D001922 ORTHO05D001441 1.8e-18 96.7 156 32.1
Mapoly0006s0151 Marchantia polymorpha HOM05D038656 ORTHO05D001441 3.1e-18 95.9 157 36.3
SEGI_16616 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 2.7e-17 92.8 151 35.1
ECA248G2877 Erigeron canadensis HOM05D001922 ORTHO05D001441 3.5e-17 92.4 135 33.3
CiPaw.03G226300 Carya illinoinensis HOM05D001922 ORTHO05D001441 1.3e-16 90.5 167 28.7
CANSAT56G0370 Cannabis sativa HOM05D001922 ORTHO05D001441 3.8e-16 89.0 174 29.3
SEGI_41389 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 3.8e-16 89.0 151 31.1
CSS0020504 Camellia sinensis var. sinensis HOM05D001922 ORTHO05D001441 5.0e-16 88.6 157 29.3
CSS0023390 Camellia sinensis var. sinensis HOM05D001922 ORTHO05D001441 5.0e-16 88.6 157 29.3
ClCG08G012170 Citrullus lanatus HOM05D001922 ORTHO05D001441 8.6e-16 87.8 153 30.7
MELO3C011134.2 Cucumis melo HOM05D001922 ORTHO05D001441 1.1e-15 87.4 155 32.3
Cfa003197 Carpinus fangiana HOM05D001922 ORTHO05D001441 2.5e-15 86.3 152 28.9
Sabra18G0044900 Salix brachista HOM05D001922 ORTHO05D001441 2.5e-15 86.3 141 33.3
THA.LOC104803751 Tarenaya hassleriana HOM05D001922 ORTHO05D001441 2.5e-15 86.3 133 32.3
PSO210G4370 Papaver somniferum HOM05D001922 ORTHO05D001441 3.3e-15 85.9 164 26.2
Thecc.09G046900 Theobroma cacao HOM05D001922 ORTHO05D001441 3.3e-15 85.9 133 33.1
Lsat_1_v5_gn_1_45660 Lactuca sativa HOM05D001922 ORTHO05D001441 4.3e-15 85.5 135 33.3
Os01g0724700 Oryza sativa ssp. japonica HOM05D001922 ORTHO05D001441 4.3e-15 85.5 156 29.5
AUR62021429 Chenopodium quinoa HOM05D001922 ORTHO05D001441 5.6e-15 85.1 158 27.8
CsaV3_2G030790 Cucumis sativus L. HOM05D001922 ORTHO05D001441 5.6e-15 85.1 151 30.5
Lj1P1172T49 Lonicera japonica HOM05D001922 ORTHO05D001441 9.5e-15 84.3 155 27.1
Duzib168G0989 Durio zibethinus HOM05D001922 ORTHO05D001441 1.2e-14 84.0 134 34.3
Rhsim07G0146400 Rhododendron simsii HOM05D001922 ORTHO05D001441 1.2e-14 84.0 155 31.6
AT2G25770 Arabidopsis thaliana HOM05D001922 ORTHO05D001441 2.8e-14 82.8 118 31.4
Thecc.09G102300 Theobroma cacao HOM05D001922 ORTHO05D001441 2.8e-14 82.8 162 27.8
COL.COLO4_20989 Corchorus olitorius HOM05D001922 ORTHO05D001441 4.7e-14 82.0 172 26.7
PSO210G2147 Papaver somniferum HOM05D001922 ORTHO05D001441 4.7e-14 82.0 164 25.0
Potri.018G046100 Populus trichocarpa HOM05D001922 ORTHO05D001441 4.7e-14 82.0 159 29.6
Sp7g30640 Schrenkiella parvula HOM05D001922 ORTHO05D001441 4.7e-14 82.0 164 32.3
Gohir.D13G193400 Gossypium hirsutum HOM05D001922 ORTHO05D001441 1.0e-13 80.9 134 32.8
Gorai.013G219400 Gossypium raimondii HOM05D001922 ORTHO05D001441 1.0e-13 80.9 134 32.8
Mapoly0006s0042 Marchantia polymorpha HOM05D003256 ORTHO05D001441 1.0e-13 80.9 148 29.1
Gohir.A13G186600 Gossypium hirsutum HOM05D001922 ORTHO05D001441 1.4e-13 80.5 138 31.9
Lalb_Chr24g0397341 Lupinus albus HOM05D001922 ORTHO05D001441 1.4e-13 80.5 140 30.7
AL7G18850 Arabidopsis lyrata HOM05D001922 ORTHO05D001441 1.8e-13 80.1 156 28.8
A03p61620 Brassica napus HOM05D001922 ORTHO05D001441 1.8e-13 80.1 160 29.4
A08p17860 Brassica napus HOM05D001922 ORTHO05D001441 1.8e-13 80.1 161 28.0
BraA08t33738Z Brassica rapa HOM05D001922 ORTHO05D001441 1.8e-13 80.1 161 28.0
Thhalv10026440m.g Eutrema salsugineum HOM05D001922 ORTHO05D001441 1.8e-13 80.1 164 29.9
Sed0010639 Sechium edule HOM05D001922 ORTHO05D001441 1.8e-13 80.1 157 28.7
Carub.0004s0555 Capsella rubella HOM05D001922 ORTHO05D001441 2.3e-13 79.7 138 29.7
CDE05G2145 Ceratophyllum demersum HOM05D001613 ORTHO05D001556 2.3e-13 79.7 160 27.5
BraA03t15204Z Brassica rapa HOM05D001922 ORTHO05D001441 3.0e-13 79.3 160 29.4
BolC3t20993H Brassica oleracea HOM05D001922 ORTHO05D001441 4.0e-13 79.0 161 27.3
Glyma.01G009200 Glycine max HOM05D001922 ORTHO05D001441 4.0e-13 79.0 125 31.2
HanXRQChr11g0352331 Helianthus annuus HOM05D001922 ORTHO05D001441 4.0e-13 79.0 155 27.7
C03p86930 Brassica napus HOM05D001922 ORTHO05D001441 5.2e-13 78.6 161 27.3
Aa31sc874G10 Aethionema arabicum HOM05D001922 ORTHO05D001441 6.8e-13 78.2 164 28.7
CDE02G4065 Ceratophyllum demersum HOM05D001922 ORTHO05D001441 8.9e-13 77.8 156 27.6
TPR.G33075 Trifolium pratense HOM05D001922 ORTHO05D001441 8.9e-13 77.8 167 28.1
TWI32G0281 Tripterygium wilfordii HOM05D001922 ORTHO05D001441 8.9e-13 77.8 156 29.5
BolC1t00593H Brassica oleracea HOM05D001922 ORTHO05D001441 1.2e-12 77.4 153 30.7
Dinv41660 Davidia involucrata HOM05D001922 ORTHO05D001441 1.2e-12 77.4 139 28.8
SEGI_07353 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 1.2e-12 77.4 133 32.3
SGA_v2.0_scaffold103G30016 Striga asiatica HOM05D001922 ORTHO05D001441 1.2e-12 77.4 156 30.1
AL4G17440 Arabidopsis lyrata HOM05D001922 ORTHO05D001441 1.5e-12 77.0 137 29.9
Nn8g39100 Nelumbo nucifera HOM05D001922 ORTHO05D001441 1.5e-12 77.0 161 28.6
BcaC09g52086 Brassica carinata HOM05D001922 ORTHO05D001441 2.0e-12 76.6 153 30.7
C01p06010 Brassica napus HOM05D001922 ORTHO05D001441 2.0e-12 76.6 153 30.7
AagrBONN_evm.TU.Sc2ySwM_117.983 Anthoceros agrestis HOM05D003256 ORTHO05D001441 2.6e-12 76.3 156 28.2
A01p05410 Brassica napus HOM05D001922 ORTHO05D001441 2.6e-12 76.3 153 30.7
BraA01t00515Z Brassica rapa HOM05D001922 ORTHO05D001441 2.6e-12 76.3 153 30.7
TPR.G14860 Trifolium pratense HOM05D001922 ORTHO05D001441 2.6e-12 76.3 163 27.6
TAR383G0055 Trochodendron aralioides HOM05D001922 ORTHO05D001441 3.4e-12 75.9 154 27.3
Manes.03G059750 Manihot esculenta HOM05D001922 ORTHO05D001441 4.4e-12 75.5 166 27.7
Ah.09g230740 Amaranthus hybridus HOM05D001922 ORTHO05D001441 5.7e-12 75.1 138 29.0
AUR62009241 Chenopodium quinoa HOM05D001922 ORTHO05D001441 5.7e-12 75.1 162 28.4
ECA248G0913 Erigeron canadensis HOM05D001922 ORTHO05D001441 5.7e-12 75.1 149 26.8
Atru.chr7.1444 Acer truncatum HOM05D001922 ORTHO05D001441 9.8e-12 74.3 149 26.2
Solyc08g066420.1 Solanum lycopersicum HOM05D001922 ORTHO05D001441 9.8e-12 74.3 140 27.9
Oeu038809.1 Olea europaea HOM05D001922 ORTHO05D001441 1.7e-11 73.6 154 27.9
Sabra10G0148900 Salix brachista HOM05D003187 ORTHO05D003630 1.7e-11 73.6 54 61.1
Aa31LG5G9850 Aethionema arabicum HOM05D001922 ORTHO05D001441 2.2e-11 73.2 156 29.5
Aqoxy7G01457 Aquilegia oxysepala HOM05D001922 ORTHO05D001441 2.2e-11 73.2 160 29.4
ECA248G3033 Erigeron canadensis HOM05D008265 ORTHO05D000440 2.2e-11 73.2 110 34.5
SEGI_34505 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 2.2e-11 73.2 123 34.1
SMO364G0193 Selaginella moellendorffii HOM05D003256 ORTHO05D001441 2.9e-11 72.8 149 30.9
Sopen08g020230 Solanum pennellii HOM05D001922 ORTHO05D001441 2.9e-11 72.8 160 25.6
CDE05G3443 Ceratophyllum demersum HOM05D000299 ORTHO05D000079 3.7e-11 72.4 152 25.7
SMO364G0633 Selaginella moellendorffii HOM05D003256 ORTHO05D001441 4.9e-11 72.0 150 31.3
MSTRG.11692 Avicennia marina HOM05D001922 ORTHO05D001441 6.4e-11 71.6 120 28.3
Pp3c7_25770 Physcomitrium patens HOM05D021802 ORTHO05D001441 6.4e-11 71.6 147 29.3
Gohir.D13G193300 Gossypium hirsutum HOM05D001922 ORTHO05D001441 1.1e-10 70.9 151 27.2
Gorai.013G219300 Gossypium raimondii HOM05D001922 ORTHO05D001441 1.1e-10 70.9 151 27.2
AagrBONN_evm.TU.Sc2ySwM_117.997 Anthoceros agrestis HOM05D003256 ORTHO05D001441 1.4e-10 70.5 147 27.9
Mapoly0021s0125 Marchantia polymorpha HOM05D003256 ORTHO05D001441 1.4e-10 70.5 146 24.7
Pp3c10_23690 Physcomitrium patens HOM05D001922 ORTHO05D001441 1.4e-10 70.5 152 25.7
Pp3c3_3850 Physcomitrium patens HOM05D021802 ORTHO05D001441 1.4e-10 70.5 126 28.6
HPP92_005575 Vanilla planifolia HOM05D001922 ORTHO05D001441 1.4e-10 70.5 136 29.4
Gohir.A13G186500 Gossypium hirsutum HOM05D001922 ORTHO05D001441 4.1e-10 68.9 151 26.5
Sabra06G0185200 Salix brachista HOM05D001922 ORTHO05D001441 4.1e-10 68.9 168 23.2
CDE08G0954 Ceratophyllum demersum HOM05D001922 ORTHO05D001441 5.4e-10 68.6 148 27.0
Lj2g0013480 Lotus japonicus HOM05D001922 ORTHO05D001441 5.4e-10 68.6 159 25.2
QL12p041137 Quercus lobata HOM05D001922 ORTHO05D001441 5.4e-10 68.6 158 24.7
SMO002G0012 Selaginella moellendorffii HOM05D003256 ORTHO05D001441 7.0e-10 68.2 156 34.0
BcaB08g35218 Brassica carinata HOM05D001922 ORTHO05D001441 9.2e-10 67.8 133 25.6
SEGI_30345 Sequoiadendron giganteum HOM05D001922 ORTHO05D001441 9.2e-10 67.8 136 30.1
Gohir.A07G022253 Gossypium hirsutum HOM05D001922 ORTHO05D001441 1.2e-09 67.4 158 27.2
Phvul.004G170100 Phaseolus vulgaris HOM05D001922 ORTHO05D001441 1.2e-09 67.4 126 29.4
Os05g0202300 Oryza sativa ssp. japonica HOM05D001922 ORTHO05D001441 2.0e-09 66.6 192 24.5
Ah.16g105960 Amaranthus hybridus HOM05D001922 ORTHO05D001441 3.5e-09 65.9 144 27.8
AagrBONN_evm.TU.Sc2ySwM_228.237 Anthoceros agrestis HOM05D003256 ORTHO05D001441 1.0e-08 64.3 151 28.5
Rhsim02G0176200 Rhododendron simsii HOM05D001922 ORTHO05D001441 1.0e-08 64.3 160 24.4
Aqoxy7G01476 Aquilegia oxysepala HOM05D001922 ORTHO05D001441 1.3e-08 63.9 126 27.8
Zm00001eb347310 Zea mays HOM05D001922 ORTHO05D001441 1.3e-08 63.9 153 26.1
AagrBONN_evm.TU.Sc2ySwM_228.1828 Anthoceros agrestis HOM05D003256 ORTHO05D001441 1.7e-08 63.5 175 26.9
Peaxi162Scf00699g00004 Petunia axillaris HOM05D001922 ORTHO05D001441 1.7e-08 63.5 150 22.7
PGSC0003DMG400004477 Solanum tuberosum HOM05D001922 ORTHO05D001441 3.9e-08 62.4 169 23.1
BcaC07g40846 Brassica carinata HOM05D001922 ORTHO05D001441 5.0e-08 62.0 118 24.6
C08p38440 Brassica napus HOM05D001922 ORTHO05D001441 5.0e-08 62.0 118 24.6
BolC8t51416H Brassica oleracea HOM05D001922 ORTHO05D001441 5.0e-08 62.0 118 24.6
A09p55450 Brassica napus HOM05D001922 ORTHO05D001441 6.6e-08 61.6 133 24.1
BraA09t40947Z Brassica rapa HOM05D001922 ORTHO05D001441 6.6e-08 61.6 133 24.1
Migut.A00190 Erythranthe guttata HOM05D001922 ORTHO05D001441 8.6e-08 61.2 165 24.8
RhsimUnG0223000 Rhododendron simsii HOM05D001922 ORTHO05D001441 8.6e-08 61.2 145 25.5
Nitab4.5_0014592g0010 Nicotiana tabacum HOM05D001922 ORTHO05D001441 2.5e-07 59.7 147 23.1
Atru.chr7.2065 Acer truncatum HOM05D001922 ORTHO05D001441 4.3e-07 58.9 177 23.7
AagrBONN_evm.TU.Sc2ySwM_228.1829 Anthoceros agrestis HOM05D003256 ORTHO05D001441 5.6e-07 58.5 145 26.2
Atru.chr7.2067 Acer truncatum HOM05D001922 ORTHO05D001441 9.5e-07 57.8 163 23.3
Nitab4.5_0000239g0050 Nicotiana tabacum HOM05D001922 ORTHO05D001441 1.6e-06 57.0 146 24.0
Actinidia14683 Actinidia chinensis HOM05D001922 ORTHO05D001441 2.1e-06 56.6 65 38.5
Pp3c1_9050 Physcomitrium patens HOM05D021802 ORTHO05D001441 2.1e-06 56.6 119 29.4


User provided reference genes

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