Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g081760 Medicago truncatula HOM05D006517 ORTHO05D007886 6.3e-64 247.3 126 100.0
Medtr0259s0040 Medicago truncatula HOM05D006517 ORTHO05D258276 1.8e-42 176.0 95 93.7
Medtr4g124370 Medicago truncatula HOM05D006517 ORTHO05D007886 1.6e-27 126.3 89 75.3
TPR.G12541 Trifolium pratense HOM05D006517 ORTHO05D007886 9.9e-25 117.1 89 68.5
Lalb_Chr13g0299091 Lupinus albus HOM05D006517 ORTHO05D007886 3.8e-24 115.2 89 67.4
Glyma.13G116000 Glycine max HOM05D006517 ORTHO05D007886 4.9e-24 114.8 89 67.4
Glyma.17G043800 Glycine max HOM05D006517 ORTHO05D007886 1.4e-23 113.2 89 66.3
Medtr8g098885 Medicago truncatula HOM05D006517 ORTHO05D007886 5.4e-23 111.3 58 93.1
Lj4g0027818 Lotus japonicus HOM05D006517 ORTHO05D007886 1.6e-22 109.8 86 65.1
Ca_21351_v3 Cicer arietinum L. HOM05D006517 ORTHO05D007886 1.7e-21 106.3 81 67.9
FAN19G3155 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.9e-21 105.1 67 73.1
FAN26G3113 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.9e-21 105.1 67 73.1
FAN28G2617 Fragaria x ananassa HOM05D006517 ORTHO05D007886 3.9e-21 105.1 67 73.1
FAN23G2301 Fragaria x ananassa HOM05D006517 ORTHO05D007886 5.1e-21 104.8 67 73.1
Medtr4g036440 Medicago truncatula HOM05D006517 ORTHO05D007886 6.6e-21 104.4 53 92.5
Phvul.003G125800 Phaseolus vulgaris HOM05D006517 ORTHO05D007886 6.6e-21 104.4 84 64.3
VMungo1215G1783 Vigna mungo HOM05D006517 ORTHO05D007886 2.5e-20 102.4 85 62.4
CiPaw.03G198900 Carya illinoinensis HOM05D006517 ORTHO05D007886 5.6e-20 101.3 89 59.6
Duzib168G1027 Durio zibethinus HOM05D006517 ORTHO05D007886 4.8e-19 98.2 81 61.7
Duzib150G1397 Durio zibethinus HOM05D006517 ORTHO05D007886 8.1e-19 97.4 81 61.7
Potri.006G217100 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.1e-18 97.1 82 59.8
Manes.03G055100 Manihot esculenta HOM05D006517 ORTHO05D007886 1.4e-18 96.7 82 59.8
Potri.018G047000 Populus trichocarpa HOM05D006517 ORTHO05D007886 1.4e-18 96.7 82 59.8
Prupe.7G189300 Prunus persica HOM05D006517 ORTHO05D007886 1.8e-18 96.3 80 61.2
QL11p003516 Quercus lobata HOM05D006517 ORTHO05D007886 2.4e-18 95.9 88 54.5
RcHm_v2.0_Chr2g0096541 Rosa chinensis HOM05D006517 ORTHO05D007886 3.1e-18 95.5 84 59.5
MD15G1225700 Malus domestica HOM05D006517 ORTHO05D007886 4.0e-18 95.1 81 59.3
CANSAT56G3804 Cannabis sativa HOM05D006517 ORTHO05D007886 5.3e-18 94.7 87 57.5
Duzib187G0844 Durio zibethinus HOM05D006517 ORTHO05D007886 5.3e-18 94.7 81 60.5
Cfa010680 Carpinus fangiana HOM05D006517 ORTHO05D007886 6.9e-18 94.4 89 55.1
FvH4_1g09680 Fragaria vesca HOM05D006517 ORTHO05D007886 6.9e-18 94.4 84 58.3
FAN26G1998 Fragaria x ananassa HOM05D006517 ORTHO05D007886 6.9e-18 94.4 84 58.3
MD02G1105800 Malus domestica HOM05D006517 ORTHO05D007886 6.9e-18 94.4 80 60.0
GSVIVG01000273001 Vitis vinifera HOM05D006517 ORTHO05D007886 6.9e-18 94.4 82 58.5
FAN23G1398 Fragaria x ananassa HOM05D006517 ORTHO05D007886 9.0e-18 94.0 84 58.3
Thecc.09G067300 Theobroma cacao HOM05D006517 ORTHO05D007886 1.5e-17 93.2 81 58.0
COL.COLO4_21178 Corchorus olitorius HOM05D006517 ORTHO05D007886 2.0e-17 92.8 81 58.0
CANSAT56G0784 Cannabis sativa HOM05D006517 ORTHO05D007886 2.6e-17 92.4 86 55.8
Thhalv10002200m.g Eutrema salsugineum HOM05D006517 ORTHO05D007886 2.6e-17 92.4 63 66.7
Cpa.g.sc82.30 Carica papaya HOM05D006517 ORTHO05D007886 7.6e-17 90.9 81 55.6
PSO541G2149 Papaver somniferum HOM05D006517 ORTHO05D007886 1.3e-16 90.1 83 59.0
Hund08920 Selenicereus undatus HOM05D006517 ORTHO05D007886 1.3e-16 90.1 81 56.8
AL4G18760 Arabidopsis lyrata HOM05D006517 ORTHO05D007886 2.2e-16 89.4 81 56.8
Cc09_g04380 Coffea canephora HOM05D006517 ORTHO05D007886 2.2e-16 89.4 81 56.8
Migut.J00866 Erythranthe guttata HOM05D006517 ORTHO05D007886 2.2e-16 89.4 86 53.5
Nn8g38504 Nelumbo nucifera HOM05D006517 ORTHO05D007886 2.2e-16 89.4 83 55.4
Gohir.D08G268100 Gossypium hirsutum HOM05D006517 ORTHO05D007886 2.9e-16 89.0 83 53.0
Gorai.004G285800 Gossypium raimondii HOM05D006517 ORTHO05D007886 2.9e-16 89.0 83 53.0
Nitab4.5_0005239g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 2.9e-16 89.0 82 54.9
PSO675G5415 Papaver somniferum HOM05D006517 ORTHO05D007886 3.8e-16 88.6 83 57.8
Ciclev10009053m.g Citrus clementina HOM05D006517 ORTHO05D007886 4.9e-16 88.2 80 55.0
Nitab4.5_0000987g0010 Nicotiana tabacum HOM05D006517 ORTHO05D007886 4.9e-16 88.2 82 54.9
Eucgr.C00754 Eucalyptus grandis HOM05D006517 ORTHO05D007886 6.4e-16 87.8 121 43.0
Os07g0618600 Oryza sativa ssp. japonica HOM05D006517 ORTHO05D007886 8.4e-16 87.4 83 53.0
Solyc06g031690.4 Solanum lycopersicum HOM05D006517 ORTHO05D007886 8.4e-16 87.4 82 53.7
THA.LOC104804445 Tarenaya hassleriana HOM05D006517 ORTHO05D007886 1.1e-15 87.0 82 54.9
MELO3C015558.2 Cucumis melo HOM05D006517 ORTHO05D007886 1.4e-15 86.7 79 55.7
Gohir.A08G246900 Gossypium hirsutum HOM05D006517 ORTHO05D007886 1.4e-15 86.7 83 51.8
Oeu000272.2 Olea europaea HOM05D006517 ORTHO05D007886 1.4e-15 86.7 85 54.1
EL10Ac8g18944 Beta vulgaris HOM05D006517 ORTHO05D007886 2.4e-15 85.9 80 57.5
AT2G26210 Arabidopsis thaliana HOM05D006517 ORTHO05D007886 3.2e-15 85.5 81 54.3
A04p20280 Brassica napus HOM05D006517 ORTHO05D007886 3.2e-15 85.5 81 53.1
BraA04t17607Z Brassica rapa HOM05D006517 ORTHO05D007886 3.2e-15 85.5 81 53.1
C04p55990 Brassica napus HOM05D006517 ORTHO05D007886 4.2e-15 85.1 81 53.1
BolC4t27132H Brassica oleracea HOM05D006517 ORTHO05D007886 4.2e-15 85.1 81 53.1
ClCG03G014700 Citrullus lanatus HOM05D006517 ORTHO05D007886 4.2e-15 85.1 78 56.4
CsaV3_1G041470 Cucumis sativus L. HOM05D006517 ORTHO05D007886 4.2e-15 85.1 79 54.4
CARHR115040 Cardamine hirsuta HOM05D006517 ORTHO05D007886 7.1e-15 84.3 80 53.8
Carub.0004s0605 Capsella rubella HOM05D006517 ORTHO05D007886 9.3e-15 84.0 81 53.1
Dinv42443 Davidia involucrata HOM05D006517 ORTHO05D007886 9.3e-15 84.0 80 53.8
SalBow6G1494 Salvia bowleyana HOM05D006517 ORTHO05D007886 9.3e-15 84.0 80 55.0
Atru.chr7.1806 Acer truncatum HOM05D006517 ORTHO05D007886 1.2e-14 83.6 81 53.1
BcaNung07167 Brassica carinata HOM05D006517 ORTHO05D007886 1.2e-14 83.6 79 53.2
Lsat_1_v5_gn_8_118080 Lactuca sativa HOM05D006517 ORTHO05D007886 1.2e-14 83.6 80 53.8
Aa31LG5G9580 Aethionema arabicum HOM05D006517 ORTHO05D007886 1.6e-14 83.2 80 53.8
Oeu000950.1 Olea europaea HOM05D006517 ORTHO05D007886 1.6e-14 83.2 81 53.1
Sp4g06310 Schrenkiella parvula HOM05D006517 ORTHO05D007886 1.6e-14 83.2 80 53.8
Zm00001eb327610 Zea mays HOM05D006517 ORTHO05D007886 1.6e-14 83.2 83 50.6
ECA232G0292 Erigeron canadensis HOM05D001622 ORTHO05D002989 2.1e-14 82.8 80 51.2
CAN.G55.2 Capsicum annuum HOM05D006517 ORTHO05D007886 2.7e-14 82.4 82 51.2
Sc18g0002960 Simmondsia chinensis HOM05D006517 ORTHO05D007886 3.5e-14 82.0 80 53.8
unitig_26.g9120 Utricularia gibba HOM05D006517 ORTHO05D007886 3.5e-14 82.0 80 52.5
Actinidia39602 Actinidia chinensis HOM05D006517 ORTHO05D007886 6.0e-14 81.3 81 50.6
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 6.0e-14 81.3 83 50.6
AUR62025324 Chenopodium quinoa HOM05D006517 ORTHO05D007886 6.0e-14 81.3 82 52.4
CDE05G1274 Ceratophyllum demersum HOM05D006517 ORTHO05D007886 7.9e-14 80.9 82 51.2
HanXRQChr09g0258421 Helianthus annuus HOM05D006517 ORTHO05D007886 7.9e-14 80.9 80 51.2
SGA_v2.0_scaffold318G48507 Striga asiatica HOM05D006517 ORTHO05D007886 2.3e-13 79.3 84 48.8
SGA_v2.0_scaffold31G12706 Striga asiatica HOM05D006517 ORTHO05D007886 2.3e-13 79.3 80 50.0
MBI13_g05966_MAGBIO Magnolia biondii HOM05D006517 ORTHO05D007886 3.0e-13 79.0 81 50.6
PGR124G0001 Punica granatum HOM05D006517 ORTHO05D007886 3.0e-13 79.0 79 51.9
PGR142G0057 Punica granatum HOM05D006517 ORTHO05D007886 3.0e-13 79.0 79 51.9
Sed0014627 Sechium edule HOM05D006517 ORTHO05D007886 3.0e-13 79.0 78 52.6
Aqoxy7G00916 Aquilegia oxysepala HOM05D006517 ORTHO05D007886 3.9e-13 78.6 79 53.2
CSS0016512 Camellia sinensis var. sinensis HOM05D006517 ORTHO05D007886 3.9e-13 78.6 81 50.6
TAR383G1010 Trochodendron aralioides HOM05D006517 ORTHO05D007886 8.7e-13 77.4 80 48.8
ATR0006G021 Amborella trichopoda HOM05D006517 ORTHO05D007886 1.5e-12 76.6 83 47.0
Rhsim05G0081000 Rhododendron simsii HOM05D006517 ORTHO05D007886 1.6e-11 73.2 48 66.7
Mapoly0086s0040 Marchantia polymorpha HOM05D006517 ORTHO05D007886 1.4e-10 70.1 81 43.2
Pp3c18_11010 Physcomitrium patens HOM05D006517 ORTHO05D007886 4.5e-09 65.1 51 54.9
Haze_03605 Corylus avellana HOM05D006517 ORTHO05D007886 5.8e-09 64.7 42 69.0
arahy.Tifrunner.gnm1.ann1.2S6U7G Arachis hypogaea HOM05D006517 ORTHO05D007886 9.9e-09 63.9 59 59.3
SMO117G0175 Selaginella moellendorffii HOM05D006517 ORTHO05D007886 2.9e-08 62.4 81 43.2


User provided reference genes

Program Settings