Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 2.5e-221 771.9 428 100.0
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 6.3e-180 634.4 430 82.1
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 1.7e-177 626.3 429 82.8
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 2.7e-175 619.0 428 81.8
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 7.0e-163 577.8 442 78.5
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 1.3e-153 547.0 432 76.9
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 2.8e-148 529.3 384 80.2
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 4.1e-139 498.8 441 70.1
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 8.6e-137 491.1 442 70.1
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 8.0e-135 484.6 285 90.2
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 1.7e-132 476.9 329 85.7
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 3.5e-130 469.2 448 65.6
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.9e-129 466.1 445 66.1
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 3.3e-128 462.6 448 63.2
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 5.6e-128 461.8 454 64.1
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 3.1e-126 456.1 447 63.5
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 7.5e-125 451.4 450 63.8
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 9.8e-125 451.1 457 61.7
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 3.2e-123 446.0 457 61.7
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 7.0e-123 444.9 457 62.8
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 1.2e-122 444.1 447 63.5
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 2.0e-122 443.4 448 61.4
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 5.0e-121 438.7 452 63.1
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 6.6e-121 438.3 446 63.0
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 8.6e-121 438.0 451 61.2
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 8.6e-121 438.0 449 62.4
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 1.5e-120 437.2 443 60.7
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 1.5e-120 437.2 446 63.0
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 1.5e-120 437.2 444 63.5
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.5e-120 436.4 446 62.8
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 2.5e-120 436.4 451 61.0
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 9.5e-120 434.5 440 63.2
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 6.2e-119 431.8 446 62.6
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 1.1e-118 431.0 450 63.3
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 9.8e-117 424.5 444 62.8
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 1.7e-116 423.7 442 60.4
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 2.5e-112 409.8 481 56.5
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 4.3e-112 409.1 446 59.0
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 7.3e-112 408.3 441 60.8
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.1e-111 406.8 368 67.7
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 2.1e-111 406.8 450 59.8
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 2.8e-111 406.4 439 60.4
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.1e-110 404.4 441 60.5
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 6.4e-108 395.2 453 56.5
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 1.1e-107 394.4 399 63.7
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 1.1e-107 394.4 307 74.9
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 1.9e-107 393.7 447 58.2
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 2.4e-107 393.3 442 56.8
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 7.1e-107 391.7 407 60.9
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 2.1e-106 390.2 357 66.9
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 1.0e-105 387.9 456 56.1
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 2.3e-105 386.7 442 57.9
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 3.0e-105 386.3 383 64.0
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.5e-104 384.0 451 56.3
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 2.5e-104 383.3 366 64.8
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 3.3e-104 382.9 411 60.8
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 4.3e-104 382.5 451 56.1
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 4.3e-104 382.5 447 59.1
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 7.3e-104 381.7 448 55.4
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.6e-103 380.6 312 72.8
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 6.2e-103 378.6 370 64.9
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 8.9e-102 374.8 410 60.0
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.2e-101 374.4 386 62.2
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 5.8e-101 372.1 410 59.5
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.2e-100 370.2 440 59.1
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 4.9e-100 369.0 431 60.3
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 6.4e-100 368.6 425 57.6
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 1.1e-99 367.9 485 50.7
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 1.9e-99 367.1 443 58.2
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.6e-98 364.0 379 61.7
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 2.7e-98 363.2 362 66.0
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 3.5e-98 362.8 359 63.5
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 7.8e-98 361.7 330 70.9
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 1.0e-97 361.3 325 69.5
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 1.7e-97 360.5 375 62.4
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.9e-97 359.4 362 63.5
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 5.1e-97 359.0 357 62.5
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 8.7e-97 358.2 362 64.4
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 1.5e-96 357.5 387 59.2
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.5e-96 357.5 295 74.6
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 1.9e-96 357.1 364 64.3
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 2.5e-96 356.7 409 60.6
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 7.3e-96 355.1 385 56.9
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 2.1e-95 353.6 256 74.6
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 3.6e-95 352.8 365 64.1
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 4.8e-95 352.4 362 64.9
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-94 351.3 373 61.4
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 2.4e-94 350.1 358 65.6
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 5.3e-94 349.0 354 65.3
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 5.3e-94 349.0 354 65.3
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 5.8e-93 345.5 359 65.5
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 5.8e-93 345.5 359 65.5
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 1.3e-92 344.4 384 59.1
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 4.2e-91 339.3 353 64.9
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 7.1e-91 338.6 345 64.9
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 9.3e-91 338.2 376 58.8
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.9e-88 330.5 365 58.6
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 2.8e-87 326.6 246 70.7
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.2e-85 321.2 459 51.0
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 4.5e-85 319.3 406 54.4
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 1.1e-80 304.7 415 52.3
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 8.1e-79 298.5 377 53.8
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 6.9e-78 295.4 363 56.7
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 7.6e-69 265.4 301 60.8
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 7.6e-69 265.4 384 51.0
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.7e-68 264.2 191 72.8
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 2.2e-68 263.8 228 65.4
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 1.1e-64 251.5 172 76.7
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 9.7e-56 221.9 241 47.3
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 4.8e-55 219.5 308 48.1
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.5e-53 214.5 308 48.1
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 3.4e-53 213.4 124 91.1
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.1e-51 208.4 225 50.7
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.4e-51 208.0 310 49.7
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 2.2e-47 194.1 273 53.8
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 2.7e-42 177.2 336 41.7
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 3.8e-36 156.8 211 44.1
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 8.5e-36 155.6 125 63.2
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 2.7e-29 134.0 238 48.3
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.3e-28 131.7 77 89.6
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.0e-17 95.5 60 78.3
TPR.G28257 Trifolium pratense HOM05D006243 ORTHO05D007688 2.9e-15 87.4 64 75.0
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 1.9e-11 74.7 157 45.2
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 4.3e-11 73.6 163 35.6


User provided reference genes

Program Settings