Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g078170 Medicago truncatula HOM05D006714 ORTHO05D008103 0.0e+00 1303.1 653 100.0
TPR.G8266 Trifolium pratense HOM05D006714 ORTHO05D008103 2.1e-275 952.2 670 77.2
Ca_05830_v3 Cicer arietinum L. HOM05D006714 ORTHO05D008103 8.5e-237 823.9 593 72.5
LjContig00141g0000721 Lotus japonicus HOM05D006714 ORTHO05D008103 2.8e-211 739.2 642 64.6
arahy.Tifrunner.gnm1.ann1.ZV72ZC Arachis hypogaea HOM05D006714 ORTHO05D008103 3.7e-192 675.6 631 60.4
arahy.Tifrunner.gnm1.ann1.E1Z4YV Arachis hypogaea HOM05D006714 ORTHO05D008103 6.4e-192 674.9 631 60.1
VMungo0647G1195 Vigna mungo HOM05D006714 ORTHO05D008103 2.3e-186 656.4 641 59.1
Lalb_Chr04g0251401 Lupinus albus HOM05D006714 ORTHO05D008103 4.0e-186 655.6 602 60.1
Glyma.14G214400 Glycine max HOM05D006714 ORTHO05D008103 1.4e-167 594.0 559 62.1
Psat2g047840 Pisum sativum HOM05D006714 ORTHO05D008103 2.3e-149 533.5 373 75.1
MD15G1138100 Malus domestica HOM05D006714 ORTHO05D008103 4.5e-145 519.2 654 48.9
Dinv28198 Davidia involucrata HOM05D006714 ORTHO05D008103 1.3e-144 517.7 627 49.6
RcHm_v2.0_Chr2g0123431 Rosa chinensis HOM05D006714 ORTHO05D008103 3.2e-143 513.1 620 50.5
FAN26G1526 Fragaria x ananassa HOM05D006714 ORTHO05D008103 9.0e-138 495.0 630 48.9
FvH4_1g25400 Fragaria vesca HOM05D006714 ORTHO05D008103 1.5e-137 494.2 607 50.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 3.4e-137 493.0 597 50.6
Cfa007804 Carpinus fangiana HOM05D006714 ORTHO05D008103 5.0e-136 489.2 590 47.6
FAN23G2031 Fragaria x ananassa HOM05D006714 ORTHO05D008103 6.5e-136 488.8 632 47.2
Duzib211G0559 Durio zibethinus HOM05D006714 ORTHO05D008103 3.2e-135 486.5 586 48.1
GSVIVG01030704001 Vitis vinifera HOM05D006714 ORTHO05D008103 5.5e-135 485.7 590 48.6
CANSAT78G1609 Cannabis sativa HOM05D006714 ORTHO05D008103 1.1e-132 478.0 587 49.6
TAR629G3521 Trochodendron aralioides HOM05D006714 ORTHO05D008103 7.4e-132 475.3 677 44.3
Haze_14269 Corylus avellana HOM05D006714 ORTHO05D008103 1.4e-130 471.1 643 44.5
TWI77G0889 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 3.1e-130 469.9 604 46.5
CsaV3_5G024210 Cucumis sativus L. HOM05D006714 ORTHO05D008103 2.0e-129 467.2 535 50.8
Thecc.04G114100 Theobroma cacao HOM05D006714 ORTHO05D008103 2.0e-129 467.2 617 45.7
Nn4g24295 Nelumbo nucifera HOM05D006714 ORTHO05D008103 1.4e-125 454.5 619 46.8
ClCG01G008770 Citrullus lanatus HOM05D006714 ORTHO05D008103 2.0e-124 450.7 529 49.1
Gohir.A07G178400 Gossypium hirsutum HOM05D006714 ORTHO05D008103 7.4e-124 448.7 603 45.6
Gohir.D07G184700 Gossypium hirsutum HOM05D006714 ORTHO05D008103 9.7e-124 448.4 598 46.0
Phvul.008G236600 Phaseolus vulgaris HOM05D006714 ORTHO05D008103 4.8e-123 446.0 500 55.2
Ciclev10011142m.g Citrus clementina HOM05D006714 ORTHO05D008103 8.2e-123 445.3 663 43.6
Gorai.001G205100 Gossypium raimondii HOM05D006714 ORTHO05D008103 1.1e-122 444.9 598 45.8
Rhsim08G0018800 Rhododendron simsii HOM05D006714 ORTHO05D008103 1.4e-122 444.5 632 44.1
Manes.02G077300 Manihot esculenta HOM05D006714 ORTHO05D008103 1.2e-121 441.4 398 57.8
Sed0011157 Sechium edule HOM05D006714 ORTHO05D008103 3.8e-120 436.4 603 44.8
CiPaw.03G072500 Carya illinoinensis HOM05D006714 ORTHO05D008103 1.5e-119 434.5 393 58.3
Cc07_g13380 Coffea canephora HOM05D006714 ORTHO05D008103 7.2e-119 432.2 678 41.6
QL02p058308 Quercus lobata HOM05D006714 ORTHO05D008103 1.2e-118 431.4 422 55.9
QL10p014398 Quercus lobata HOM05D006714 ORTHO05D008103 1.2e-118 431.4 422 55.9
Nitab4.5_0000201g0160 Nicotiana tabacum HOM05D006714 ORTHO05D008103 2.7e-118 430.3 666 42.3
HanXRQChr15g0483231 Helianthus annuus HOM05D006714 ORTHO05D008103 8.0e-118 428.7 527 48.0
Hund13103 Selenicereus undatus HOM05D006714 ORTHO05D008103 5.2e-117 426.0 570 45.3
DCAR_014171 Daucus carota HOM05D006714 ORTHO05D008103 2.6e-116 423.7 546 48.4
Hma1.2p1_0158F.1_g070140 Hydrangea macrophylla HOM05D006714 ORTHO05D008103 4.4e-116 422.9 676 41.6
EL10Ac2g03178 Beta vulgaris HOM05D006714 ORTHO05D008103 2.2e-115 420.6 637 42.2
Potri.017G130400 Populus trichocarpa HOM05D006714 ORTHO05D008103 1.1e-114 418.3 398 54.5
TWI74G0031 Tripterygium wilfordii HOM05D006714 ORTHO05D008103 4.5e-113 412.9 402 54.7
Sabra17G0108600 Salix brachista HOM05D006714 ORTHO05D008103 1.0e-112 411.8 548 44.7
SalBow5G2523 Salvia bowleyana HOM05D006714 ORTHO05D008103 1.0e-112 411.8 409 54.5
ECA247G1081 Erigeron canadensis HOM05D006714 ORTHO05D008103 1.3e-112 411.4 534 46.1
Migut.K00904 Erythranthe guttata HOM05D006714 ORTHO05D008103 1.1e-111 408.3 678 41.4
Prupe.4G281200 Prunus persica HOM05D006714 ORTHO05D008103 4.2e-111 406.4 563 45.6
AUR62018218 Chenopodium quinoa HOM05D006714 ORTHO05D008103 2.6e-108 397.1 458 49.1
Oeu032319.1 Olea europaea HOM05D006714 ORTHO05D008103 9.7e-108 395.2 317 63.4
PGR031G2162 Punica granatum HOM05D006714 ORTHO05D008103 9.7e-108 395.2 374 55.6
vmacro18531 Vaccinium macrocarpon HOM05D006714 ORTHO05D008103 9.7e-108 395.2 516 45.9
Aqoxy1G00382 Aquilegia oxysepala HOM05D006714 ORTHO05D008103 2.2e-107 394.0 411 53.0
PSO017G5883 Papaver somniferum HOM05D006714 ORTHO05D008103 4.8e-107 392.9 359 57.7
AUR62037796 Chenopodium quinoa HOM05D006714 ORTHO05D008103 3.1e-106 390.2 544 43.6
SGA_v2.0_scaffold45G17176 Striga asiatica HOM05D006714 ORTHO05D008103 5.3e-106 389.4 587 42.8
Dinv19038 Davidia involucrata HOM05D006714 ORTHO05D008103 7.0e-106 389.0 510 46.1
Cpa.g.sc116.59 Carica papaya HOM05D006714 ORTHO05D008103 2.9e-104 383.6 467 49.7
Nitab4.5_0006893g0050 Nicotiana tabacum HOM05D006714 ORTHO05D008103 6.5e-104 382.5 678 40.0
CAN.G222.36 Capsicum annuum HOM05D006714 ORTHO05D008103 3.6e-102 376.7 374 55.1
Thhalv10012945m.g Eutrema salsugineum HOM05D006714 ORTHO05D008103 2.0e-100 370.9 637 40.5
Lsat_1_v5_gn_3_63641 Lactuca sativa HOM05D006714 ORTHO05D008103 3.4e-100 370.2 520 46.3
THA.LOC104820908 Tarenaya hassleriana HOM05D006714 ORTHO05D008103 1.7e-99 367.9 334 56.6
Aa31LG11G13040 Aethionema arabicum HOM05D006714 ORTHO05D008103 7.0e-98 362.5 509 43.8
Carub.0006s1481 Capsella rubella HOM05D006714 ORTHO05D008103 2.0e-97 360.9 685 38.4
Solyc11g011060.3 Solanum lycopersicum HOM05D006714 ORTHO05D008103 4.5e-97 359.8 367 51.8
AT5G16610 Arabidopsis thaliana HOM05D006714 ORTHO05D008103 7.7e-97 359.0 543 41.8
Sp6g27560 Schrenkiella parvula HOM05D006714 ORTHO05D008103 5.0e-96 356.3 375 52.3
Sopen11g005830 Solanum pennellii HOM05D006714 ORTHO05D008103 8.6e-96 355.5 361 52.1
CARHR196610 Cardamine hirsuta HOM05D006714 ORTHO05D008103 1.5e-95 354.8 673 38.5
HPP92_011112 Vanilla planifolia HOM05D006714 ORTHO05D008103 4.7e-94 349.7 362 51.1
AL6G27570 Arabidopsis lyrata HOM05D006714 ORTHO05D008103 6.8e-93 345.9 676 37.4
HPP92_011097 Vanilla planifolia HOM05D006714 ORTHO05D008103 1.3e-91 341.7 362 50.6
A10p22600 Brassica napus HOM05D006714 ORTHO05D008103 4.9e-91 339.7 646 37.9
BraA10t44322Z Brassica rapa HOM05D006714 ORTHO05D008103 2.4e-90 337.4 291 60.5
C09p60510 Brassica napus HOM05D006714 ORTHO05D008103 1.6e-89 334.7 263 62.7
BolC9t58884H Brassica oleracea HOM05D006714 ORTHO05D008103 1.6e-89 334.7 263 62.7
ATR0171G009 Amborella trichopoda HOM05D006714 ORTHO05D008103 1.3e-88 331.6 479 42.2
BcaB08g36834 Brassica carinata HOM05D006714 ORTHO05D008103 1.2e-84 318.5 561 38.7
SalBow5G2948 Salvia bowleyana HOM05D006714 ORTHO05D008103 6.4e-83 312.8 398 47.0
Os03g0221300 Oryza sativa ssp. japonica HOM05D006714 ORTHO05D008103 1.1e-82 312.0 599 36.2
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 1.4e-82 311.6 335 50.7
Sc11g0004560 Simmondsia chinensis HOM05D006714 ORTHO05D008103 3.5e-81 307.0 494 41.7
CDE07G1834 Ceratophyllum demersum HOM05D006714 ORTHO05D008103 4.6e-81 306.6 334 49.7
Atru.chr1.1942 Acer truncatum HOM05D006714 ORTHO05D008103 2.3e-80 304.3 193 73.1
PSO063G0106 Papaver somniferum HOM05D006714 ORTHO05D008103 1.6e-78 298.1 217 66.8
unitig_748.g8636 Utricularia gibba HOM05D006714 ORTHO05D008103 2.3e-77 294.3 244 60.7
PSO478G0421 Papaver somniferum HOM05D006714 ORTHO05D008103 2.6e-76 290.8 283 55.8
Peaxi162Scf00305g00412 Petunia axillaris HOM05D006714 ORTHO05D008103 9.8e-76 288.9 195 68.2
Actinidia28805 Actinidia chinensis HOM05D006714 ORTHO05D008103 4.0e-69 266.9 308 49.4
Pp3c23_20330 Physcomitrium patens HOM05D006714 ORTHO05D008103 8.3e-67 259.2 274 47.8
Pp3c24_16350 Physcomitrium patens HOM05D006714 ORTHO05D008103 1.7e-64 251.5 274 48.5
Actinidia35727 Actinidia chinensis HOM05D006714 ORTHO05D008103 2.6e-60 237.7 375 41.9
MELO3C022869.2 Cucumis melo HOM05D006714 ORTHO05D008103 1.6e-57 228.4 557 33.0
SEGI_28129 Sequoiadendron giganteum HOM05D006714 ORTHO05D008103 8.1e-54 216.1 298 43.6
CBR_g12792 Chara braunii HOM05D006714 ORTHO05D008103 6.9e-53 213.0 252 43.7
Eucgr.F02863 Eucalyptus grandis HOM05D006714 ORTHO05D008103 5.4e-50 203.4 120 75.0
SMO340G0205 Selaginella moellendorffii HOM05D006714 ORTHO05D008103 2.7e-49 201.1 189 49.7
QL93p0100_0731 Quercus lobata HOM05D006714 ORTHO05D008103 2.5e-47 194.5 116 75.0
QL93p0100_0723 Quercus lobata HOM05D006714 ORTHO05D008103 8.4e-35 152.9 201 48.8
CSS0036373 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 4.6e-33 147.1 211 45.5
CSS0024067 Camellia sinensis var. sinensis HOM05D006714 ORTHO05D008103 1.8e-32 145.2 182 48.9
Peaxi162Scf00305g00413 Petunia axillaris HOM05D006714 ORTHO05D008103 7.9e-25 119.8 169 45.0
Atru.chr1.1941 Acer truncatum HOM05D006714 ORTHO05D008103 1.3e-06 59.3 194 30.4


User provided reference genes

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