Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.9e-284 982.2 584 100.0
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 6.8e-202 708.0 605 74.5
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 2.3e-197 693.0 598 76.3
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.6e-166 590.5 650 67.1
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 4.8e-147 525.8 667 61.5
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 4.8e-131 472.6 679 56.6
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 1.8e-130 470.7 685 56.4
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 9.7e-116 421.8 659 49.5
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.6e-113 414.5 653 48.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.1e-111 408.3 668 49.4
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 2.1e-110 404.1 673 50.1
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 3.0e-109 400.2 639 50.5
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 4.0e-109 399.8 687 47.2
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 5.7e-108 396.0 669 50.2
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.5e-103 381.3 663 50.8
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 2.5e-103 380.6 680 48.7
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 3.6e-102 376.7 668 47.6
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 8.0e-102 375.6 697 45.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 4.0e-101 373.2 697 45.6
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-93 348.2 658 44.2
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-93 348.2 658 44.2
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 3.0e-93 347.1 658 44.2
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.2e-92 345.1 669 42.3
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 2.0e-92 344.4 605 47.8
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 6.3e-91 339.3 630 45.1
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.1e-90 337.0 655 43.7
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.0e-88 332.0 678 45.4
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 5.0e-88 329.7 621 47.3
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 3.3e-87 327.0 626 46.2
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.3e-85 320.9 621 45.4
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 7.5e-84 315.8 693 43.9
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 9.8e-84 315.5 588 44.6
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 4.9e-83 313.2 620 45.8
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.1e-82 312.0 653 42.7
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.1e-82 312.0 693 41.1
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 2.4e-82 310.8 713 43.2
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 2.4e-82 310.8 672 42.6
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 1.2e-81 308.5 685 44.2
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 5.9e-81 306.2 685 42.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.7e-80 304.7 623 44.1
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 5.0e-80 303.1 647 42.3
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 8.6e-80 302.4 655 41.7
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 9.5e-79 298.9 621 42.0
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 3.1e-77 293.9 698 40.8
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 2.6e-76 290.8 698 41.7
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 3.4e-76 290.4 591 43.1
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 9.8e-76 288.9 701 40.1
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 2.2e-75 287.7 677 40.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 3.7e-75 287.0 680 43.5
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 5.4e-74 283.1 700 41.7
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 6.0e-73 279.6 623 42.9
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.0e-72 278.9 685 41.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.7e-72 278.1 681 40.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.0e-72 277.3 686 40.7
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.6e-72 275.8 670 40.6
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.5e-71 275.0 692 39.7
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 1.9e-71 274.6 690 42.8
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 7.3e-71 272.7 699 43.1
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 4.7e-70 270.0 654 40.2
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.1e-69 268.9 684 42.3
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 4.0e-69 266.9 673 39.7
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 1.5e-68 265.0 647 42.3
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 4.4e-68 263.5 643 42.5
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 6.4e-67 259.6 552 41.7
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 8.3e-67 259.2 598 43.0
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.7e-65 254.2 628 42.7
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 3.5e-65 253.8 597 41.0
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 7.8e-65 252.7 588 43.0
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 3.0e-64 250.8 621 44.1
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 4.3e-63 246.9 636 38.4
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 9.5e-63 245.7 706 41.4
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.6e-62 245.0 722 40.3
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 6.2e-62 243.0 379 55.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.8e-61 241.5 669 45.0
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 3.4e-60 237.3 632 41.3
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 4.4e-60 236.9 658 37.7
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 4.4e-60 236.9 630 38.3
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 7.6e-60 236.1 623 42.4
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 2.7e-57 227.6 636 38.2
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.3e-56 224.6 658 38.3
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 3.0e-56 224.2 610 36.1
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 5.1e-56 223.4 622 42.1
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 1.2e-54 218.8 629 37.5
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 3.6e-54 217.2 618 38.2
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 6.2e-54 216.5 640 38.8
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.9e-53 212.6 601 37.6
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 2.0e-52 211.5 631 35.0
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.3e-51 208.8 635 40.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 2.2e-51 208.0 587 34.6
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.4e-51 206.5 529 40.6
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 1.4e-50 205.3 575 38.1
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 9.3e-50 202.6 635 39.8
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 2.3e-48 198.0 587 35.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 3.0e-48 197.6 317 47.6
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 5.1e-48 196.8 680 34.6
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.5e-47 195.3 632 37.8
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.9e-47 194.9 547 39.3
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 4.3e-47 193.7 613 41.3
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 7.3e-47 193.0 719 38.8
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 9.6e-47 192.6 610 34.6
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.1e-45 189.1 625 37.3
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 1.1e-45 189.1 474 40.7
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 1.4e-45 188.7 646 35.3
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.4e-45 188.0 617 38.9
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 3.1e-45 187.6 629 37.4
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 5.3e-45 186.8 622 39.9
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.9e-45 186.4 622 38.1
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.2e-44 185.7 539 38.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 1.2e-44 185.7 545 36.5
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 9.9e-44 182.6 549 38.3
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.3e-43 182.2 621 37.0
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-43 181.8 605 34.9
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.2e-43 181.4 538 36.1
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.2e-42 177.6 652 37.1
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 4.2e-42 177.2 630 33.5
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 2.1e-41 174.9 456 39.9
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 2.7e-41 174.5 649 38.5
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 4.6e-41 173.7 335 42.4
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 1.0e-40 172.6 618 39.0
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 5.1e-40 170.2 527 34.7
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 1.5e-39 168.7 600 31.5
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 1.9e-39 168.3 511 33.9
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 3.7e-38 164.1 590 32.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 4.0e-37 160.6 614 31.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.2e-36 159.1 557 33.2
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 5.8e-36 156.8 604 31.5
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 7.6e-36 156.4 538 32.2
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.4e-34 152.1 370 39.7
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.4e-34 152.1 622 34.7
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.6e-33 148.7 237 47.7
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 4.6e-33 147.1 547 38.9
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 4.6e-33 147.1 655 28.7
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.3e-32 145.6 411 44.3
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 5.6e-31 140.2 584 31.2
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 2.1e-30 138.3 546 33.9
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 2.8e-30 137.9 546 30.0
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 1.1e-29 136.0 606 30.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 1.4e-29 135.6 614 30.5
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 1.5e-28 132.1 264 40.9
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 2.0e-28 131.7 654 28.0
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 1.3e-27 129.0 479 35.7
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 3.2e-26 124.4 611 30.0
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 7.1e-26 123.2 479 34.2
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 2.7e-25 121.3 384 41.7
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 3.9e-24 117.5 473 33.8
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 6.7e-24 116.7 506 34.2
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 6.7e-24 116.7 506 34.2
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 4.3e-23 114.0 599 32.7
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.6e-22 112.1 399 37.8
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 2.1e-22 111.7 103 66.0
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.1e-21 107.8 146 56.2
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 8.5e-19 99.8 514 32.9
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.9e-18 98.6 495 33.1
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 2.7e-17 94.7 129 48.8
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.3e-16 92.4 212 35.4
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 8.7e-16 89.7 488 26.8
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 2.2e-14 85.1 247 34.8
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 6.3e-14 83.6 186 39.8
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.1e-13 82.8 251 37.1
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 2.0e-12 78.6 280 31.1
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 3.4e-12 77.8 167 37.7
ATR0124G054 Amborella trichopoda HOM05D003795 ORTHO05D004308 1.1e-10 72.8 561 26.4
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.9e-10 72.0 106 42.5
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 4.2e-10 70.9 124 45.2
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 5.5e-10 70.5 383 30.3
SEGI_22138 Sequoiadendron giganteum HOM05D003795 ORTHO05D004308 1.4e-08 65.9 536 29.1
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 2.3e-08 65.1 97 44.3
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 2.6e-07 61.6 88 45.5
MD14G1072800 Malus domestica HOM05D003795 ORTHO05D004308 1.7e-06 58.9 85 49.4
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.8e-06 58.2 90 48.9


User provided reference genes

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