Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g069660 Medicago truncatula HOM05D005349 ORTHO05D006901 4.1e-92 341.3 162 100.0
Ca_05579_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 4.3e-81 304.7 160 88.1
LjContig00155g0000909 Lotus japonicus HOM05D005349 ORTHO05D006901 1.2e-78 296.6 160 87.5
Psat2g059680 Pisum sativum HOM05D005349 ORTHO05D006901 5.8e-78 294.3 160 84.4
TPR.G24015 Trifolium pratense HOM05D005349 ORTHO05D006901 9.9e-78 293.5 162 84.6
Glyma.14G191200 Glycine max HOM05D005349 ORTHO05D006901 7.4e-73 277.3 160 81.9
VMungo0647G2322 Vigna mungo HOM05D005349 ORTHO05D006901 1.3e-72 276.6 160 81.2
Lalb_Chr17g0344951 Lupinus albus HOM05D005349 ORTHO05D006901 1.4e-71 273.1 160 79.4
Phvul.008G263400 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 1.3e-69 266.5 160 77.5
arahy.Tifrunner.gnm1.ann1.AUQG9H Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-65 252.3 160 73.8
arahy.Tifrunner.gnm1.ann1.S3TFE0 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.5e-65 252.3 160 73.8
arahy.Tifrunner.gnm1.ann1.TC15WI Arachis hypogaea HOM05D005349 ORTHO05D006901 4.3e-65 251.5 160 73.8
Hund18861 Selenicereus undatus HOM05D005349 ORTHO05D006901 1.3e-64 250.0 160 75.0
arahy.Tifrunner.gnm1.ann1.2I3SKZ Arachis hypogaea HOM05D005349 ORTHO05D006901 2.1e-64 249.2 160 73.1
AUR62001690 Chenopodium quinoa HOM05D005349 ORTHO05D006901 6.9e-63 244.2 160 72.5
Lj4P290T21 Lonicera japonica HOM05D005349 ORTHO05D006901 6.9e-63 244.2 165 70.9
AUR62020092 Chenopodium quinoa HOM05D005349 ORTHO05D006901 9.0e-63 243.8 160 72.5
CiPaw.13G081900 Carya illinoinensis HOM05D005349 ORTHO05D006901 1.2e-62 243.4 165 70.3
QL01p027076 Quercus lobata HOM05D005349 ORTHO05D006901 2.0e-62 242.7 165 71.5
Potri.009G042300 Populus trichocarpa HOM05D005349 ORTHO05D006901 3.4e-62 241.9 165 68.5
Cc01_g13820 Coffea canephora HOM05D005349 ORTHO05D006901 7.6e-62 240.7 160 70.0
Sc12g0000960 Simmondsia chinensis HOM05D005349 ORTHO05D006901 1.0e-61 240.4 160 71.2
Duzib168G1908 Durio zibethinus HOM05D005349 ORTHO05D006901 1.7e-61 239.6 165 69.7
Sabra09G0029800 Salix brachista HOM05D005349 ORTHO05D006901 1.7e-61 239.6 165 67.9
CSS0008956 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 2.9e-61 238.8 165 69.7
FvH4_3g38110 Fragaria vesca HOM05D005349 ORTHO05D006901 2.9e-61 238.8 143 76.2
Rhsim01G0234700 Rhododendron simsii HOM05D005349 ORTHO05D006901 2.9e-61 238.8 165 69.1
COL.COLO4_19094 Corchorus olitorius HOM05D005349 ORTHO05D006901 3.8e-61 238.4 165 69.7
Dinv28589 Davidia involucrata HOM05D005349 ORTHO05D006901 3.8e-61 238.4 165 69.7
Dinv28608 Davidia involucrata HOM05D005349 ORTHO05D006901 3.8e-61 238.4 165 69.7
Cfa011642 Carpinus fangiana HOM05D005349 ORTHO05D006901 4.9e-61 238.0 165 69.1
Gohir.A13G225100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 4.9e-61 238.0 165 68.5
FAN11G0404 Fragaria x ananassa HOM05D005349 ORTHO05D006901 6.5e-61 237.7 143 76.2
Gohir.D13G230100 Gossypium hirsutum HOM05D005349 ORTHO05D006901 6.5e-61 237.7 165 68.5
Gorai.013G260800 Gossypium raimondii HOM05D005349 ORTHO05D006901 6.5e-61 237.7 165 68.5
Thecc.09G306800 Theobroma cacao HOM05D005349 ORTHO05D006901 8.4e-61 237.3 165 67.9
RcHm_v2.0_Chr5g0068461 Rosa chinensis HOM05D005349 ORTHO05D006901 1.9e-60 236.1 143 74.8
Eucgr.B02277 Eucalyptus grandis HOM05D005349 ORTHO05D006901 2.5e-60 235.7 165 69.1
Hma1.2p1_0543F.1_g175200 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 2.5e-60 235.7 142 75.4
PGR102G2487 Punica granatum HOM05D005349 ORTHO05D006901 2.5e-60 235.7 165 69.7
PGR102G2751 Punica granatum HOM05D005349 ORTHO05D006901 2.5e-60 235.7 142 75.4
Ah.13g068160 Amaranthus hybridus HOM05D005349 ORTHO05D006901 3.2e-60 235.3 151 70.9
Manes.17G019100 Manihot esculenta HOM05D005349 ORTHO05D006901 3.2e-60 235.3 165 69.7
Cpa.g.sc112.60 Carica papaya HOM05D005349 ORTHO05D006901 4.2e-60 235.0 143 74.1
Hma1.2p1_3368F.1_g335610 Hydrangea macrophylla HOM05D005349 ORTHO05D006901 9.3e-60 233.8 142 74.6
Haze_24248 Corylus avellana HOM05D005349 ORTHO05D006901 1.2e-59 233.4 165 67.9
Ah.13g068140 Amaranthus hybridus HOM05D005349 ORTHO05D006901 2.1e-59 232.6 138 75.4
FAN16G1977 Fragaria x ananassa HOM05D005349 ORTHO05D006901 2.1e-59 232.6 143 74.8
MD03G1077000 Malus domestica HOM05D005349 ORTHO05D006901 2.7e-59 232.3 143 73.4
THA.LOC104810731 Tarenaya hassleriana HOM05D005349 ORTHO05D006901 3.5e-59 231.9 165 66.7
MD11G1081300 Malus domestica HOM05D005349 ORTHO05D006901 4.6e-59 231.5 143 73.4
Nn2g13609 Nelumbo nucifera HOM05D005349 ORTHO05D006901 4.6e-59 231.5 145 72.4
Oeu009384.1 Olea europaea HOM05D005349 ORTHO05D006901 4.6e-59 231.5 143 72.7
Oeu049278.1 Olea europaea HOM05D005349 ORTHO05D006901 7.9e-59 230.7 165 66.7
Sopen02g032400 Solanum pennellii HOM05D005349 ORTHO05D006901 1.0e-58 230.3 142 73.2
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.3e-58 229.9 142 73.2
MELO3C020577.2 Cucumis melo HOM05D005349 ORTHO05D006901 1.8e-58 229.6 165 67.3
CsaV3_1G035930 Cucumis sativus L. HOM05D005349 ORTHO05D006901 1.8e-58 229.6 165 67.3
Migut.I00090 Erythranthe guttata HOM05D005349 ORTHO05D006901 1.8e-58 229.6 165 66.7
Prupe.6G061600 Prunus persica HOM05D005349 ORTHO05D006901 1.8e-58 229.6 162 67.9
CAN.G206.119 Capsicum annuum HOM05D005349 ORTHO05D006901 2.3e-58 229.2 142 73.9
DCAR_007395 Daucus carota HOM05D005349 ORTHO05D006901 3.0e-58 228.8 154 68.8
Solyc02g087650.4 Solanum lycopersicum HOM05D005349 ORTHO05D006901 3.0e-58 228.8 142 72.5
Nitab4.5_0002265g0210 Nicotiana tabacum HOM05D005349 ORTHO05D006901 3.9e-58 228.4 142 72.5
Peaxi162Scf00129g00059 Petunia axillaris HOM05D005349 ORTHO05D006901 3.9e-58 228.4 141 73.0
MSTRG.12084 Avicennia marina HOM05D005349 ORTHO05D006901 5.1e-58 228.0 139 74.8
PGSC0003DMG400001310 Solanum tuberosum HOM05D005349 ORTHO05D006901 5.1e-58 228.0 142 71.8
PGSC0003DMG400001415 Solanum tuberosum HOM05D005349 ORTHO05D006901 5.1e-58 228.0 142 71.8
TAR369G0898 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.1e-58 228.0 155 69.0
TAR633G1541 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.1e-58 228.0 147 70.7
Sp6g20620 Schrenkiella parvula HOM05D005349 ORTHO05D006901 8.7e-58 227.3 165 64.2
Thhalv10014880m.g Eutrema salsugineum HOM05D005349 ORTHO05D006901 1.5e-57 226.5 165 64.2
AL8G35250 Arabidopsis lyrata HOM05D005349 ORTHO05D006901 2.5e-57 225.7 165 63.6
BolC3t13854H Brassica oleracea HOM05D005349 ORTHO05D006901 2.5e-57 225.7 165 64.2
BraA03t10509Z Brassica rapa HOM05D005349 ORTHO05D006901 2.5e-57 225.7 165 64.2
Aa31LG1G11620 Aethionema arabicum HOM05D005349 ORTHO05D006901 3.3e-57 225.3 165 64.8
BcaB05g22458 Brassica carinata HOM05D005349 ORTHO05D006901 4.3e-57 224.9 162 64.2
DCAR_005899 Daucus carota HOM05D005349 ORTHO05D006901 4.3e-57 224.9 153 68.0
Sed0012895 Sechium edule HOM05D005349 ORTHO05D006901 5.7e-57 224.6 165 64.8
TAR369G0142 Trochodendron aralioides HOM05D005349 ORTHO05D006901 5.7e-57 224.6 147 69.4
Carub.0008s1956 Capsella rubella HOM05D005349 ORTHO05D006901 7.4e-57 224.2 165 64.2
ClCG03G001010 Citrullus lanatus HOM05D005349 ORTHO05D006901 7.4e-57 224.2 165 67.9
SalBow2G1455 Salvia bowleyana HOM05D005349 ORTHO05D006901 7.4e-57 224.2 160 66.9
AT5G58920 Arabidopsis thaliana HOM05D005349 ORTHO05D006901 1.3e-56 223.4 165 63.6
Nn7g36392 Nelumbo nucifera HOM05D005349 ORTHO05D006901 2.8e-56 222.2 143 71.3
BcaC03g14066 Brassica carinata HOM05D005349 ORTHO05D006901 3.7e-56 221.9 165 63.0
BraA02t05823Z Brassica rapa HOM05D005349 ORTHO05D006901 3.7e-56 221.9 165 62.4
TAR369G0502 Trochodendron aralioides HOM05D005349 ORTHO05D006901 4.8e-56 221.5 143 71.3
A03p11980 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-55 220.3 142 68.3
C03p14070 Brassica napus HOM05D005349 ORTHO05D006901 1.1e-55 220.3 142 68.3
BolC2t07413H Brassica oleracea HOM05D005349 ORTHO05D006901 1.4e-55 219.9 165 62.4
CARHR272860 Cardamine hirsuta HOM05D005349 ORTHO05D006901 1.4e-55 219.9 165 61.2
MBI06_g38157_MAGBIO Magnolia biondii HOM05D005349 ORTHO05D006901 1.4e-55 219.9 145 68.3
unitig_0.g448 Utricularia gibba HOM05D005349 ORTHO05D006901 1.4e-55 219.9 142 71.1
Ciclev10029468m.g Citrus clementina HOM05D005349 ORTHO05D006901 2.4e-55 219.2 153 68.6
PSO017G5320 Papaver somniferum HOM05D005349 ORTHO05D006901 3.1e-55 218.8 145 67.6
PSO675G4048 Papaver somniferum HOM05D005349 ORTHO05D006901 3.1e-55 218.8 145 67.6
C02p13010 Brassica napus HOM05D005349 ORTHO05D006901 1.2e-54 216.9 152 64.5
A02p07450 Brassica napus HOM05D005349 ORTHO05D006901 2.0e-54 216.1 142 66.2
Ah.06g188660 Amaranthus hybridus HOM05D005349 ORTHO05D006901 5.0e-53 211.5 123 78.0
ECA236G3830 Erigeron canadensis HOM05D005329 ORTHO05D006858 8.4e-53 210.7 139 69.1
ATR0618G061 Amborella trichopoda HOM05D005349 ORTHO05D006901 3.2e-52 208.8 139 68.3
HanXRQChr08g0237161 Helianthus annuus HOM05D005349 ORTHO05D006901 5.5e-52 208.0 143 67.1
Lsat_1_v5_gn_9_25761 Lactuca sativa HOM05D005349 ORTHO05D006901 9.3e-52 207.2 142 64.8
Aqoxy3G03834 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.2e-51 206.8 143 64.3
Zm00001eb031680 Zea mays HOM05D005349 ORTHO05D006901 1.6e-51 206.5 135 65.9
CANSAT54G2462 Cannabis sativa HOM05D005349 ORTHO05D006901 3.5e-51 205.3 166 62.0
SGA_v2.0_scaffold120G32925 Striga asiatica HOM05D005349 ORTHO05D006901 7.9e-51 204.1 160 61.9
CDE05G1614 Ceratophyllum demersum HOM05D005349 ORTHO05D006901 1.1e-49 200.3 160 58.1
Actinidia23901 Actinidia chinensis HOM05D005349 ORTHO05D006901 1.9e-49 199.5 165 58.8
Aqoxy5G03549 Aquilegia oxysepala HOM05D005349 ORTHO05D006901 1.9e-49 199.5 138 64.5
TWI31G0683 Tripterygium wilfordii HOM05D005349 ORTHO05D006901 1.9e-49 199.5 156 60.3
HanXRQChr02g0036251 Helianthus annuus HOM05D005349 ORTHO05D006901 4.3e-49 198.4 140 65.7
GSVIVG01024797001 Vitis vinifera HOM05D005349 ORTHO05D006901 1.1e-47 193.7 142 64.8
COL.COLO4_19096 Corchorus olitorius HOM05D005349 ORTHO05D006901 8.5e-45 184.1 114 74.6
BcaB01g04630 Brassica carinata HOM05D005349 ORTHO05D006901 3.0e-42 175.6 165 55.2
SEGI_38965 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 3.3e-41 172.2 122 66.4
Lalb_Chr15g0082641 Lupinus albus HOM05D005349 ORTHO05D006901 4.8e-40 168.3 153 51.6
SEGI_26492 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 8.2e-40 167.5 123 64.2
Lalb_Chr15g0082661 Lupinus albus HOM05D005349 ORTHO05D006901 2.4e-39 166.0 153 51.0
Mapoly0132s0009 Marchantia polymorpha HOM05D005349 ORTHO05D006901 3.4e-38 162.2 123 61.0
ECA247G0916 Erigeron canadensis HOM05D000773 ORTHO05D006901 6.5e-37 157.9 103 69.9
Lj6g0020380 Lotus japonicus HOM05D005349 ORTHO05D006901 7.2e-36 154.5 162 52.5
Ca_14903_v3 Cicer arietinum L. HOM05D005349 ORTHO05D006901 1.8e-34 149.8 144 52.1
Pp3c5_10690 Physcomitrium patens HOM05D005349 ORTHO05D006901 3.9e-34 148.7 127 56.7
arahy.Tifrunner.gnm1.ann1.B244J5 Arachis hypogaea HOM05D005349 ORTHO05D006901 2.8e-32 142.5 175 49.7
arahy.Tifrunner.gnm1.ann1.NW0IJW Arachis hypogaea HOM05D005349 ORTHO05D006901 4.8e-32 141.7 175 49.7
Medtr3g462700 Medicago truncatula HOM05D005349 ORTHO05D006901 3.1e-31 139.0 163 46.0
Os01g0362000 Oryza sativa ssp. japonica HOM05D005349 ORTHO05D006901 2.0e-30 136.3 89 69.7
RcHm_v2.0_Chr5g0068491 Rosa chinensis HOM05D005349 ORTHO05D006901 5.9e-30 134.8 88 69.3
Glyma.18G064800 Glycine max HOM05D005349 ORTHO05D006901 1.3e-29 133.7 162 46.9
Psat5g161800 Pisum sativum HOM05D005349 ORTHO05D006901 2.2e-29 132.9 155 44.5
Phvul.006G066000 Phaseolus vulgaris HOM05D005349 ORTHO05D006901 2.6e-25 119.4 163 44.2
TPR.G13285 Trifolium pratense HOM05D005349 ORTHO05D006901 9.7e-25 117.5 165 40.6
CSS0044332 Camellia sinensis var. sinensis HOM05D005349 ORTHO05D006901 5.9e-22 108.2 124 48.4
Nitab4.5_0000564g0380 Nicotiana tabacum HOM05D005349 ORTHO05D006901 1.2e-19 100.5 66 72.7
BcaC04g19863 Brassica carinata HOM05D005349 ORTHO05D023983 3.4e-17 92.4 143 38.5
BcaB01g04628 Brassica carinata HOM05D005349 ORTHO05D023983 5.5e-12 75.1 53 66.0
A10p15360 Brassica napus HOM05D005349 ORTHO05D006901 5.5e-12 75.1 61 55.7
BolC9t57969H Brassica oleracea HOM05D005349 ORTHO05D023983 7.5e-09 64.7 120 31.7
SEGI_40143 Sequoiadendron giganteum HOM05D005349 ORTHO05D006901 2.2e-08 63.2 58 51.7
C09p51090 Brassica napus HOM05D005349 ORTHO05D023983 3.7e-08 62.4 49 55.1
HanXRQChr08g0237061 Helianthus annuus HOM05D005349 ORTHO05D006901 4.9e-08 62.0 62 53.2
BraA10t43697Z Brassica rapa HOM05D005349 ORTHO05D023983 5.9e-06 55.1 46 52.2


User provided reference genes

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