Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 6.1e-51 203.8 96 100.0
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 8.3e-32 140.2 86 75.6
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 3.2e-31 138.3 86 74.4
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 3.2e-31 138.3 86 73.3
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 4.1e-31 137.9 86 74.4
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.2e-30 136.3 86 73.3
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 2.7e-30 135.2 86 73.3
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 3.5e-30 134.8 86 69.8
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 3.5e-30 134.8 86 69.8
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 1.3e-29 132.9 86 68.6
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.3e-29 132.9 83 74.7
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 2.3e-29 132.1 84 72.6
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 3.0e-29 131.7 86 73.3
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 3.9e-29 131.3 85 72.9
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 5.0e-29 131.0 86 72.1
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 5.0e-29 131.0 86 72.1
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 5.0e-29 131.0 80 75.0
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.9e-28 129.0 86 70.9
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 9.5e-28 126.7 84 71.4
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-27 125.9 86 68.6
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.6e-27 125.9 86 68.6
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 2.8e-27 125.2 86 68.6
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 4.7e-27 124.4 88 64.8
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 6.2e-27 124.0 84 70.2
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.8e-26 122.5 86 64.0
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.3e-26 122.1 86 68.6
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 4.0e-26 121.3 86 66.3
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.0e-26 121.3 86 62.8
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 4.0e-26 121.3 86 62.8
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 4.0e-26 121.3 86 62.8
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 4.0e-26 121.3 86 62.8
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 6.8e-26 120.6 86 65.1
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.2e-25 119.8 86 64.0
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 1.5e-25 119.4 86 61.6
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.5e-25 119.4 86 61.6
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 1.5e-25 119.4 86 64.0
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 1.5e-25 119.4 86 64.0
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 1.5e-25 119.4 86 62.8
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 2.0e-25 119.0 86 61.6
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.0e-25 119.0 86 60.5
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 2.0e-25 119.0 86 60.5
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 2.6e-25 118.6 86 61.6
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 3.4e-25 118.2 86 59.3
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.4e-25 118.2 86 61.6
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 4.4e-25 117.9 86 64.0
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 4.4e-25 117.9 86 58.1
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.8e-25 117.5 86 60.5
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 7.5e-25 117.1 86 61.6
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 9.8e-25 116.7 86 62.8
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 1.3e-24 116.3 86 61.6
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.3e-24 116.3 86 59.3
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.3e-24 116.3 86 60.5
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 1.7e-24 115.9 86 59.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.7e-24 115.9 86 59.3
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.7e-24 115.9 91 58.2
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 2.2e-24 115.5 86 61.6
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 2.9e-24 115.2 86 60.5
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.7e-24 114.8 86 61.6
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 3.7e-24 114.8 76 69.7
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 4.9e-24 114.4 86 60.5
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 4.9e-24 114.4 86 61.6
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 6.4e-24 114.0 86 59.3
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 6.4e-24 114.0 86 60.5
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.4e-24 114.0 86 60.5
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 6.4e-24 114.0 86 61.6
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 6.4e-24 114.0 86 58.1
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 6.4e-24 114.0 86 59.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 8.3e-24 113.6 61 82.0
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.1e-23 113.2 86 60.5
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 1.1e-23 113.2 86 58.1
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 1.1e-23 113.2 86 59.3
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.1e-23 113.2 86 60.5
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 1.4e-23 112.8 79 64.6
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.4e-23 112.8 86 59.3
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.9e-23 112.5 86 58.1
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 2.4e-23 112.1 86 59.3
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 2.4e-23 112.1 85 60.0
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 2.4e-23 112.1 86 58.1
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 3.2e-23 111.7 86 61.6
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 3.2e-23 111.7 86 59.3
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 3.2e-23 111.7 86 59.3
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 3.2e-23 111.7 83 57.8
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 4.1e-23 111.3 86 59.3
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 4.1e-23 111.3 86 58.1
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 4.1e-23 111.3 86 59.3
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 4.1e-23 111.3 86 55.8
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 4.1e-23 111.3 79 64.6
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 5.4e-23 110.9 86 54.7
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 5.4e-23 110.9 83 61.4
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 7.1e-23 110.5 79 62.0
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 7.1e-23 110.5 88 53.4
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 9.2e-23 110.2 79 63.3
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 9.2e-23 110.2 79 63.3
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 9.2e-23 110.2 79 63.3
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 9.2e-23 110.2 86 58.1
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 9.2e-23 110.2 86 54.7
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 9.2e-23 110.2 84 58.3
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.2e-22 109.8 80 60.0
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.2e-22 109.8 80 60.0
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 2.7e-22 108.6 83 60.2
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 6.0e-22 107.5 86 54.7
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.0e-21 106.7 79 63.3
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.3e-21 106.3 79 63.3
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.7e-21 105.9 86 55.8
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 2.3e-21 105.5 79 62.0
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 2.3e-21 105.5 79 62.0
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 2.3e-21 105.5 79 62.0
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 2.3e-21 105.5 79 60.8
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 2.3e-21 105.5 86 55.8
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 2.3e-21 105.5 86 55.8
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 3.0e-21 105.1 86 52.3
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.0e-21 105.1 79 60.8
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 3.0e-21 105.1 86 55.8
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.0e-21 105.1 86 57.0
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.9e-21 104.8 86 55.8
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 3.9e-21 104.8 79 62.0
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.9e-21 104.8 84 57.1
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 3.9e-21 104.8 86 59.3
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.9e-20 102.4 84 54.8
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.9e-20 102.4 69 71.0
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 2.5e-20 102.1 86 52.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 3.3e-20 101.7 86 54.7
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 4.3e-20 101.3 79 59.5
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 4.3e-20 101.3 86 53.5
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 7.3e-20 100.5 86 52.3
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 9.5e-20 100.1 86 51.2
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.6e-19 99.4 80 52.5
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 8.1e-19 97.1 86 48.8
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.3e-18 95.5 80 52.5
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 2.6e-17 92.0 80 50.0
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.6e-17 92.0 83 49.4
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 3.4e-17 91.7 86 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.3e-16 89.7 86 47.7
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 2.9e-16 88.6 63 58.7
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.5e-14 81.6 65 58.5
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 1.2e-11 73.2 64 53.1
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.1e-11 72.4 83 39.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 1.5e-09 66.2 64 43.8


User provided reference genes

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