Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g069205 Medicago truncatula HOM05D007583 ORTHO05D009591 2.1e-58 228.8 112 100.0
Psat2g061160 Pisum sativum HOM05D007583 ORTHO05D009591 6.7e-41 170.6 110 77.3
TPR.G5848 Trifolium pratense HOM05D007583 ORTHO05D009591 2.2e-39 165.6 110 73.6
LjContig00155g0018445 Lotus japonicus HOM05D007583 ORTHO05D009591 1.5e-37 159.5 110 72.7
Glyma.02G222700 Glycine max HOM05D007583 ORTHO05D009591 8.5e-36 153.7 110 72.7
arahy.Tifrunner.gnm1.ann1.WWD45I Arachis hypogaea HOM05D007583 ORTHO05D009591 7.2e-35 150.6 110 70.9
arahy.Tifrunner.gnm1.ann1.371AVF Arachis hypogaea HOM05D007583 ORTHO05D009591 1.2e-34 149.8 110 70.0
Phvul.008G189400 Phaseolus vulgaris HOM05D007583 ORTHO05D009591 2.2e-31 139.0 111 66.7
VMungo0647G0188 Vigna mungo HOM05D007583 ORTHO05D009591 5.3e-30 134.4 110 64.5
Lalb_Chr17g0344861 Lupinus albus HOM05D007583 ORTHO05D009591 2.6e-29 132.1 110 64.5
Thecc.03G210100 Theobroma cacao HOM05D007583 ORTHO05D009591 8.5e-28 127.1 110 63.6
Haze_00308 Corylus avellana HOM05D007583 ORTHO05D009591 2.5e-27 125.6 110 61.8
COL.COLO4_14383 Corchorus olitorius HOM05D007583 ORTHO05D009591 4.2e-27 124.8 110 60.9
Prupe.2G320200 Prunus persica HOM05D007583 ORTHO05D009591 3.6e-26 121.7 111 60.4
CiPaw.05G206200 Carya illinoinensis HOM05D007583 ORTHO05D009591 1.8e-25 119.4 112 57.1
FAN01G0256 Fragaria x ananassa HOM05D007583 ORTHO05D009591 1.8e-25 119.4 122 55.7
FvH4_7g33050 Fragaria vesca HOM05D007583 ORTHO05D009591 2.3e-25 119.0 122 55.7
Dinv17291 Davidia involucrata HOM05D007583 ORTHO05D009591 3.0e-25 118.6 110 60.9
FAN03G2810 Fragaria x ananassa HOM05D007583 ORTHO05D009591 3.9e-25 118.2 122 55.7
FAN10G3230 Fragaria x ananassa HOM05D007583 ORTHO05D009591 3.9e-25 118.2 124 56.5
Gohir.A12G245600 Gossypium hirsutum HOM05D007583 ORTHO05D009591 5.2e-25 117.9 111 55.9
Gohir.D12G246400 Gossypium hirsutum HOM05D007583 ORTHO05D009591 8.8e-25 117.1 111 56.8
Atru.chr12.2485 Acer truncatum HOM05D007583 ORTHO05D009591 2.0e-24 115.9 115 54.8
FAN10G1550 Fragaria x ananassa HOM05D007583 ORTHO05D009591 2.0e-24 115.9 122 54.9
Gorai.008G264000 Gossypium raimondii HOM05D007583 ORTHO05D009591 4.4e-24 114.8 111 55.9
Glyma.14G189600 Glycine max HOM05D007583 ORTHO05D009591 7.4e-24 114.0 91 63.7
CSS0038047 Camellia sinensis var. sinensis HOM05D007583 ORTHO05D009591 9.7e-24 113.6 112 54.5
CiPaw.06G039700 Carya illinoinensis HOM05D007583 ORTHO05D009591 1.3e-23 113.2 115 58.3
RcHm_v2.0_Chr1g0383061 Rosa chinensis HOM05D007583 ORTHO05D009591 1.7e-23 112.8 122 52.5
CSS0020696 Camellia sinensis var. sinensis HOM05D007583 ORTHO05D009591 2.2e-23 112.5 112 53.6
Duzib084G1298 Durio zibethinus HOM05D007583 ORTHO05D009591 2.2e-23 112.5 110 52.7
CANSAT21G0363 Cannabis sativa HOM05D007583 ORTHO05D009591 3.7e-23 111.7 116 55.2
Sabra12G0008700 Salix brachista HOM05D007583 ORTHO05D009591 6.3e-23 110.9 101 57.4
Potri.012G007200 Populus trichocarpa HOM05D007583 ORTHO05D009591 1.1e-22 110.2 114 53.5
Sabra12G0004200 Salix brachista HOM05D007583 ORTHO05D009591 1.4e-22 109.8 105 56.2
THA.LOC104799940 Tarenaya hassleriana HOM05D007583 ORTHO05D009591 1.4e-22 109.8 110 54.5
MD07G1301600 Malus domestica HOM05D007583 ORTHO05D009591 1.8e-22 109.4 122 53.3
MD01G1229600 Malus domestica HOM05D007583 ORTHO05D009591 2.4e-22 109.0 120 53.3
Dinv29203 Davidia involucrata HOM05D007583 ORTHO05D009591 3.1e-22 108.6 109 55.0
Sabra15G0002500 Salix brachista HOM05D007583 ORTHO05D009591 3.1e-22 108.6 110 53.6
CAN.G303.41 Capsicum annuum HOM05D007583 ORTHO05D009591 4.1e-22 108.2 110 55.5
Ciclev10023379m.g Citrus clementina HOM05D007583 ORTHO05D009591 1.6e-21 106.3 110 54.5
Lj1A1029T63 Lonicera japonica HOM05D007583 ORTHO05D009591 1.6e-21 106.3 117 52.1
Cpa.g.sc3.165 Carica papaya HOM05D007583 ORTHO05D009591 2.6e-21 105.5 110 51.8
Rhsim03G0216800 Rhododendron simsii HOM05D007583 ORTHO05D009591 4.5e-21 104.8 114 53.5
Peaxi162Scf01447g00015 Petunia axillaris HOM05D007583 ORTHO05D009591 5.9e-21 104.4 111 52.3
PGR042G3197 Punica granatum HOM05D007583 ORTHO05D009591 1.0e-20 103.6 114 55.3
Sopen03g021840 Solanum pennellii HOM05D007583 ORTHO05D009591 2.9e-20 102.1 111 55.9
QL09p006750 Quercus lobata HOM05D007583 ORTHO05D009591 5.0e-20 101.3 101 52.5
Actinidia34276 Actinidia chinensis HOM05D007583 ORTHO05D009591 6.5e-20 100.9 110 51.8
Actinidia08707 Actinidia chinensis HOM05D007583 ORTHO05D009591 8.5e-20 100.5 110 52.7
Sc19g0000500 Simmondsia chinensis HOM05D007583 ORTHO05D009591 8.5e-20 100.5 110 47.3
Ah.07g204560 Amaranthus hybridus HOM05D007583 ORTHO05D009591 1.1e-19 100.1 110 46.4
Nitab4.5_0004654g0060 Nicotiana tabacum HOM05D007583 ORTHO05D009591 1.1e-19 100.1 100 59.0
Oeu017371.1 Olea europaea HOM05D007583 ORTHO05D009591 1.1e-19 100.1 124 47.6
vmacro06454 Vaccinium macrocarpon HOM05D007583 ORTHO05D009591 1.1e-19 100.1 111 53.2
EL10Ac3g05153 Beta vulgaris HOM05D007583 ORTHO05D009591 1.5e-19 99.8 110 50.0
Cc02_g00730 Coffea canephora HOM05D007583 ORTHO05D009591 1.5e-19 99.8 116 49.1
PGSC0003DMG400000557 Solanum tuberosum HOM05D007583 ORTHO05D009591 1.5e-19 99.8 111 55.9
Manes.01G044300 Manihot esculenta HOM05D007583 ORTHO05D009591 2.5e-19 99.0 110 50.9
Nitab4.5_0000021g0070 Nicotiana tabacum HOM05D007583 ORTHO05D009591 7.2e-19 97.4 114 50.0
Potri.015G003800 Populus trichocarpa HOM05D007583 ORTHO05D009591 7.2e-19 97.4 111 50.5
DCAR_020383 Daucus carota HOM05D007583 ORTHO05D009591 9.4e-19 97.1 126 45.2
Aqoxy5G04366 Aquilegia oxysepala HOM05D007583 ORTHO05D009591 1.8e-17 92.8 109 48.6
SGA_v2.0_scaffold18G08478 Striga asiatica HOM05D007583 ORTHO05D009591 4.0e-17 91.7 123 44.7
TWI23G1098 Tripterygium wilfordii HOM05D007583 ORTHO05D009591 4.0e-17 91.7 112 49.1
Lsat_1_v5_gn_6_32000 Lactuca sativa HOM05D007583 ORTHO05D009591 2.0e-16 89.4 112 50.9
GSVIVG01038661001 Vitis vinifera HOM05D007583 ORTHO05D009591 2.0e-16 89.4 67 61.2
Eucgr.A00968 Eucalyptus grandis HOM05D007583 ORTHO05D009591 2.6e-16 89.0 111 45.0
BcaC09g50578 Brassica carinata HOM05D007583 ORTHO05D009591 4.4e-16 88.2 124 45.2
A01p18820 Brassica napus HOM05D007583 ORTHO05D009591 4.4e-16 88.2 124 45.2
C01p23760 Brassica napus HOM05D007583 ORTHO05D009591 4.4e-16 88.2 124 45.2
BcaNung01657 Brassica carinata HOM05D007583 ORTHO05D009591 1.3e-15 86.7 126 45.2
Rhsim03G0216700 Rhododendron simsii HOM05D007583 ORTHO05D009591 1.7e-15 86.3 57 64.9
Carub.0007s1327 Capsella rubella HOM05D007583 ORTHO05D009591 2.8e-15 85.5 130 40.8
Hund09725 Selenicereus undatus HOM05D007583 ORTHO05D009591 8.2e-15 84.0 103 42.7
Sp7g25520 Schrenkiella parvula HOM05D007583 ORTHO05D009591 1.1e-14 83.6 124 42.7
Solyc03g080110.3 Solanum lycopersicum HOM05D007583 ORTHO05D009591 1.8e-14 82.8 110 45.5
TAR374G0489 Trochodendron aralioides HOM05D007583 ORTHO05D009591 2.4e-14 82.4 107 46.7
MSTRG.8601 Avicennia marina HOM05D007583 ORTHO05D009591 3.1e-14 82.0 117 42.7
HanXRQChr04g0117921 Helianthus annuus HOM05D007583 ORTHO05D009591 4.1e-14 81.6 113 47.8
CARHR235290 Cardamine hirsuta HOM05D007583 ORTHO05D009591 1.6e-13 79.7 124 41.9
PSO782G1249 Papaver somniferum HOM05D007583 ORTHO05D009591 2.0e-13 79.3 116 47.4
Sed0020934 Sechium edule HOM05D007583 ORTHO05D009591 2.7e-13 79.0 104 51.0
AL7G25160 Arabidopsis lyrata HOM05D007583 ORTHO05D009591 7.7e-13 77.4 134 38.1
Nn1g00469 Nelumbo nucifera HOM05D007583 ORTHO05D009591 7.7e-13 77.4 107 42.1
BolC1t02327H Brassica oleracea HOM05D007583 ORTHO05D009591 1.3e-12 76.6 115 42.6
BraA01t01826Z Brassica rapa HOM05D007583 ORTHO05D009591 1.3e-12 76.6 115 42.6
Thhalv10026470m.g Eutrema salsugineum HOM05D007583 ORTHO05D009591 1.7e-12 76.3 133 38.3
PSO063G3856 Papaver somniferum HOM05D007583 ORTHO05D009591 2.2e-12 75.9 110 46.4
Migut.F00139 Erythranthe guttata HOM05D007583 ORTHO05D009591 8.5e-12 73.9 125 40.8
Os04g0581800 Oryza sativa ssp. japonica HOM05D007583 ORTHO05D009591 1.2e-10 70.1 103 38.8
AT4G27590 Arabidopsis thaliana HOM05D007583 ORTHO05D009591 8.0e-10 67.4 120 35.8
ClCG07G009640 Citrullus lanatus HOM05D007583 ORTHO05D009591 1.0e-09 67.0 53 60.4
HPP92_015070 Vanilla planifolia HOM05D007583 ORTHO05D009591 1.2e-08 63.5 96 41.7
Zm00001eb072980 Zea mays HOM05D007583 ORTHO05D009591 2.8e-07 58.9 103 35.9


User provided reference genes

Program Settings