Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 4.5e-85 317.8 148 100.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 3.7e-79 298.1 148 95.9
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.0e-76 290.0 148 94.6
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.0e-76 290.0 148 94.6
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.5e-72 276.2 148 91.2
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 2.6e-69 265.4 148 86.5
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.2e-67 258.1 148 84.5
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.2e-66 256.5 148 82.4
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 6.1e-66 254.2 145 83.4
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 1.8e-65 252.7 148 81.1
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.8e-65 252.7 148 81.1
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 3.0e-65 251.9 151 77.5
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.2e-65 251.1 148 79.7
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 1.1e-64 250.0 145 82.8
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 1.1e-64 250.0 148 79.7
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 1.5e-64 249.6 148 79.7
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 2.0e-64 249.2 148 79.7
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 2.0e-64 249.2 148 81.1
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.6e-64 248.8 148 80.4
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 3.3e-64 248.4 148 81.1
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 7.4e-64 247.3 150 80.7
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 9.7e-64 246.9 148 80.4
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 9.7e-64 246.9 145 81.4
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.3e-63 246.5 148 75.7
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 6.3e-63 244.2 148 78.4
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 6.3e-63 244.2 148 78.4
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 6.3e-63 244.2 148 78.4
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.4e-62 243.0 150 77.3
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 76.4
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 1.8e-62 242.7 148 77.7
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 3.1e-62 241.9 148 75.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 4.1e-62 241.5 148 78.4
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 7.0e-62 240.7 141 80.9
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 9.1e-62 240.4 148 78.4
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 9.1e-62 240.4 148 78.4
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 77.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 76.4
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 76.4
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 77.0
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 1.2e-61 240.0 148 78.4
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 1.6e-61 239.6 146 79.5
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.6e-61 238.8 147 75.5
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 78.4
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 4.5e-61 238.0 148 78.4
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 7.7e-61 237.3 150 80.0
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 7.7e-61 237.3 150 80.0
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 7.7e-61 237.3 148 73.6
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.7e-60 236.1 148 74.3
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 2.2e-60 235.7 148 75.0
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.9e-60 235.3 148 77.0
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 3.8e-60 235.0 150 77.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 3.8e-60 235.0 148 73.6
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 5.0e-60 234.6 148 77.0
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 5.0e-60 234.6 149 75.2
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 6.5e-60 234.2 148 75.7
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 8.5e-60 233.8 148 75.7
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.1e-59 233.4 132 84.1
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 1.5e-59 233.0 145 77.2
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 1.5e-59 233.0 148 73.0
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 75.0
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.9e-59 232.6 148 75.0
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 2.5e-59 232.3 150 76.0
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 2.5e-59 232.3 148 75.0
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 3.2e-59 231.9 148 75.7
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 5.5e-59 231.1 148 75.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 9.4e-59 230.3 148 74.3
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 71.6
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 71.6
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.6e-58 229.6 149 75.2
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 74.3
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 1.6e-58 229.6 139 80.6
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 1.6e-58 229.6 148 72.3
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 2.1e-58 229.2 148 73.6
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 2.1e-58 229.2 148 73.6
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 3.6e-58 228.4 148 71.6
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 3.6e-58 228.4 148 73.0
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 4.7e-58 228.0 148 75.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 6.1e-58 227.6 148 72.3
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 6.1e-58 227.6 148 72.3
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 1.0e-57 226.9 148 73.6
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 1.0e-57 226.9 149 72.5
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.0e-57 226.9 148 74.3
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 1.4e-57 226.5 153 73.2
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 1.8e-57 226.1 150 74.7
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.8e-57 226.1 133 80.5
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.8e-57 226.1 148 72.3
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 2.3e-57 225.7 147 72.8
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 5.2e-57 224.6 148 73.0
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 8.8e-57 223.8 142 74.6
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 8.8e-57 223.8 133 78.9
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 8.8e-57 223.8 133 78.9
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 8.8e-57 223.8 148 70.9
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.2e-56 223.4 149 71.8
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 1.5e-56 223.0 145 71.7
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.0e-56 222.6 148 71.6
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.0e-56 222.6 148 74.3
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 2.6e-56 222.2 150 71.3
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 4.4e-56 221.5 148 70.9
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.7e-55 219.5 146 73.3
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 1.7e-55 219.5 148 68.9
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.7e-55 219.5 148 71.6
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 4.8e-55 218.0 148 67.6
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 6.3e-55 217.6 150 70.7
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 6.3e-55 217.6 148 67.6
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 8.2e-55 217.2 150 70.0
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 1.4e-54 216.5 146 71.9
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 5.3e-54 214.5 148 67.6
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 7.0e-54 214.2 151 70.9
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 9.1e-54 213.8 150 69.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 7.7e-53 210.7 152 68.4
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 7.7e-53 210.7 152 68.4
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 7.7e-53 210.7 152 68.4
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-52 210.3 149 69.8
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-52 210.3 150 67.3
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.0e-52 210.3 149 69.8
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 1.3e-52 209.9 151 66.2
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 1.7e-52 209.5 152 67.8
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 1.7e-52 209.5 152 67.8
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.2e-52 209.1 149 69.1
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.2e-52 209.1 149 69.1
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 2.2e-52 209.1 152 68.4
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 2.9e-52 208.8 152 68.4
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.9e-52 208.8 135 73.3
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 5.0e-52 208.0 133 70.7
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 6.5e-52 207.6 152 67.8
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 1.1e-51 206.8 148 65.5
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 66.0
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 1.9e-51 206.1 148 62.8
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 4.2e-51 204.9 148 62.8
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 1.2e-50 203.4 146 66.4
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-50 203.0 134 75.4
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 8.0e-50 200.7 150 67.3
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.0e-49 200.3 150 66.7
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.0e-49 200.3 127 74.0
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 1.4e-49 199.9 120 75.8
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 3.0e-49 198.7 150 66.7
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 3.0e-49 198.7 150 66.7
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 3.0e-49 198.7 150 66.7
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.5e-48 196.4 154 67.5
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 1.5e-48 196.4 150 64.0
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 1.1e-46 190.3 124 73.4
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 2.4e-46 189.1 134 70.1
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 2.5e-43 179.1 148 65.5
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 2.4e-38 162.5 148 58.8
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 9.2e-38 160.6 148 57.4
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 3.8e-36 155.2 103 71.8
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 1.5e-35 153.3 103 73.8
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 1.5e-35 153.3 112 69.6
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 1.2e-32 143.7 152 51.3
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 1.7e-31 139.8 142 52.1
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 4.4e-24 115.2 141 42.6
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.2e-18 97.1 68 75.0
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.1e-18 96.3 128 46.9
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.8e-18 95.9 87 50.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 2.3e-17 92.8 79 67.1
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 1.0e-12 77.4 37 86.5
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 1.8e-09 66.6 92 34.8
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 2.9e-07 59.3 78 35.9


User provided reference genes

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