Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g068170 Medicago truncatula HOM05D007036 ORTHO05D008885 2.5e-178 628.6 311 100.0
Medtr0004s0610 Medicago truncatula HOM05D007036 ORTHO05D008885 2.7e-148 528.9 327 80.7
Medtr1g051205 Medicago truncatula HOM05D007036 ORTHO05D008885 1.1e-146 523.5 323 80.8
TPR.G36679 Trifolium pratense HOM05D007036 ORTHO05D008885 1.8e-144 516.2 327 77.7
Psat1g099640 Pisum sativum HOM05D007036 ORTHO05D008885 1.0e-139 500.4 327 76.8
Lj2g0012301 Lotus japonicus HOM05D007036 ORTHO05D008885 9.0e-120 434.1 327 65.7
Lalb_Chr19g0129471 Lupinus albus HOM05D007036 ORTHO05D008885 2.7e-116 422.5 327 64.5
Glyma.03G035400 Glycine max HOM05D007036 ORTHO05D008885 8.7e-115 417.5 327 63.6
Phvul.010G069800 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 2.5e-114 416.0 327 62.1
Phvul.011G085400 Phaseolus vulgaris HOM05D007036 ORTHO05D008885 2.5e-114 416.0 327 62.7
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 7.4e-114 414.5 327 62.4
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.3e-113 413.7 327 61.5
Cfa020750 Carpinus fangiana HOM05D007036 ORTHO05D008885 2.8e-113 412.5 327 63.9
Glyma.01G132800 Glycine max HOM05D007036 ORTHO05D008885 6.3e-113 411.4 327 62.4
Haze_19103 Corylus avellana HOM05D007036 ORTHO05D008885 1.4e-112 410.2 327 63.0
RcHm_v2.0_Chr4g0397671 Rosa chinensis HOM05D007036 ORTHO05D008885 5.3e-112 408.3 327 63.3
FAN17G1483 Fragaria x ananassa HOM05D007036 ORTHO05D008885 6.5e-110 401.4 327 62.1
TWI34G0744 Tripterygium wilfordii HOM05D007036 ORTHO05D008885 8.5e-110 401.0 327 61.5
FAN12G1049 Fragaria x ananassa HOM05D007036 ORTHO05D008885 1.4e-109 400.2 327 61.8
VMungo0331G1618 Vigna mungo HOM05D007036 ORTHO05D008885 4.2e-109 398.7 313 62.6
ClCG11G011370 Citrullus lanatus HOM05D007036 ORTHO05D008885 1.6e-108 396.7 327 60.9
CSS0020574 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 3.6e-108 395.6 327 58.7
CsaV3_2G009100 Cucumis sativus L. HOM05D007036 ORTHO05D008885 5.7e-106 388.3 327 59.6
MELO3C003928.2 Cucumis melo HOM05D007036 ORTHO05D008885 7.4e-106 387.9 327 59.9
Sed0028219 Sechium edule HOM05D007036 ORTHO05D008885 1.7e-105 386.7 327 59.3
CANSAT80G2763 Cannabis sativa HOM05D007036 ORTHO05D008885 3.1e-104 382.5 327 58.1
Sabra18G0121200 Salix brachista HOM05D007036 ORTHO05D008885 4.1e-104 382.1 328 60.1
Sabra18G0128300 Salix brachista HOM05D007036 ORTHO05D008885 4.1e-104 382.1 328 60.4
Lj5P749T15 Lonicera japonica HOM05D007036 ORTHO05D008885 5.3e-104 381.7 327 58.1
FvH4_4g06090 Fragaria vesca HOM05D007036 ORTHO05D008885 2.0e-103 379.8 321 61.7
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 2.0e-103 379.8 328 58.5
vmacro22700 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 1.7e-102 376.7 327 58.1
Atru.chr7.958 Acer truncatum HOM05D007036 ORTHO05D008885 3.8e-102 375.6 327 57.5
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 3.8e-102 375.6 327 59.0
Rhsim01G0110100 Rhododendron simsii HOM05D007036 ORTHO05D008885 3.8e-102 375.6 327 57.8
CSS0018855 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 6.5e-102 374.8 310 58.4
Gohir.A06G110000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 8.5e-102 374.4 328 57.6
Gohir.D06G112000 Gossypium hirsutum HOM05D007036 ORTHO05D008885 3.2e-101 372.5 328 57.3
Gorai.010G127600 Gossypium raimondii HOM05D007036 ORTHO05D008885 4.2e-101 372.1 328 57.3
Potri.018G146900 Populus trichocarpa HOM05D007036 ORTHO05D008885 4.7e-100 368.6 328 59.5
Aqoxy7G02614 Aquilegia oxysepala HOM05D007036 ORTHO05D008885 3.0e-99 365.9 324 56.2
TAR636G0074 Trochodendron aralioides HOM05D007036 ORTHO05D008885 3.3e-98 362.5 327 56.6
AUR62029463 Chenopodium quinoa HOM05D007036 ORTHO05D008885 4.4e-98 362.1 312 57.4
MD11G1028400 Malus domestica HOM05D007036 ORTHO05D008885 1.3e-97 360.5 328 57.6
Duzib168G0358 Durio zibethinus HOM05D007036 ORTHO05D008885 3.1e-96 355.9 328 57.0
Aa31LG4G9890 Aethionema arabicum HOM05D007036 ORTHO05D008885 2.0e-95 353.2 327 55.4
PGSC0003DMG400013697 Solanum tuberosum HOM05D007036 ORTHO05D008885 4.5e-95 352.1 327 56.3
Ah.07g208320 Amaranthus hybridus HOM05D007036 ORTHO05D008885 7.7e-95 351.3 317 55.8
Peaxi162Scf00954g00025 Petunia axillaris HOM05D007036 ORTHO05D008885 1.3e-94 350.5 327 56.6
MSTRG.5959 Avicennia marina HOM05D007036 ORTHO05D008885 1.7e-94 350.1 311 57.2
HanXRQChr09g0261951 Helianthus annuus HOM05D007036 ORTHO05D008885 1.7e-94 350.1 327 53.8
Oeu011819.1 Olea europaea HOM05D007036 ORTHO05D008885 2.2e-94 349.7 327 54.7
CSS0014683 Camellia sinensis var. sinensis HOM05D007036 ORTHO05D008885 2.9e-94 349.4 284 60.6
Sopen05g027850 Solanum pennellii HOM05D007036 ORTHO05D008885 2.9e-94 349.4 327 56.3
Sp5g14950 Schrenkiella parvula HOM05D007036 ORTHO05D008885 4.2e-93 345.5 327 54.7
FAN07G1271 Fragaria x ananassa HOM05D007036 ORTHO05D008885 9.4e-93 344.4 308 58.4
Lsat_1_v5_gn_6_31220 Lactuca sativa HOM05D007036 ORTHO05D008885 9.4e-93 344.4 327 52.6
CAN.G106.6 Capsicum annuum HOM05D007036 ORTHO05D008885 1.2e-92 344.0 327 55.0
AT3G42630 Arabidopsis thaliana HOM05D007036 ORTHO05D008885 4.7e-92 342.0 327 53.2
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 8.0e-92 341.3 326 54.9
AL5G20840 Arabidopsis lyrata HOM05D007036 ORTHO05D008885 1.8e-91 340.1 326 53.1
BcaC01g01887 Brassica carinata HOM05D007036 ORTHO05D008885 3.0e-91 339.3 327 54.4
C03p70950 Brassica napus HOM05D007036 ORTHO05D008885 1.1e-90 337.4 327 54.4
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 3.3e-90 335.9 330 52.4
BraA06t25155Z Brassica rapa HOM05D007036 ORTHO05D008885 4.4e-90 335.5 327 53.8
A06p20770 Brassica napus HOM05D007036 ORTHO05D008885 5.7e-90 335.1 327 53.2
BolC3t19373H Brassica oleracea HOM05D007036 ORTHO05D008885 5.7e-90 335.1 327 54.1
BcaB01g00982 Brassica carinata HOM05D007036 ORTHO05D008885 9.7e-90 334.3 327 54.4
Carub.0001s3409 Capsella rubella HOM05D007036 ORTHO05D008885 3.7e-89 332.4 327 54.1
Sc16g0002180 Simmondsia chinensis HOM05D007036 ORTHO05D008885 4.8e-89 332.0 328 53.0
Nitab4.5_0000404g0190 Nicotiana tabacum HOM05D007036 ORTHO05D008885 3.1e-88 329.3 326 54.3
Carub.0016s0003 Capsella rubella HOM05D007036 ORTHO05D008885 5.3e-88 328.6 320 52.8
Migut.J00838 Erythranthe guttata HOM05D007036 ORTHO05D008885 5.3e-88 328.6 327 51.7
Ca_04679_v3 Cicer arietinum L. HOM05D007036 ORTHO05D008885 3.5e-87 325.9 219 74.4
ECA236G1169 Erigeron canadensis HOM05D007036 ORTHO05D008885 3.8e-86 322.4 311 53.1
VMungo0540G1720 Vigna mungo HOM05D007036 ORTHO05D008885 3.8e-86 322.4 245 64.5
QL11p008742 Quercus lobata HOM05D007036 ORTHO05D008885 5.0e-86 322.0 234 68.8
CARHR153640 Cardamine hirsuta HOM05D007036 ORTHO05D008885 2.5e-85 319.7 327 52.0
Prupe.1G064400 Prunus persica HOM05D007036 ORTHO05D008885 2.1e-84 316.6 236 67.4
Cc00_g00150 Coffea canephora HOM05D007036 ORTHO05D008885 4.0e-83 312.4 327 50.2
SGA_v2.0_scaffold318G48469 Striga asiatica HOM05D007036 ORTHO05D008885 5.2e-83 312.0 327 51.7
Manes.01G260400 Manihot esculenta HOM05D007036 ORTHO05D008885 2.6e-82 309.7 327 51.1
Cpa.g.sc115.26 Carica papaya HOM05D007036 ORTHO05D008885 1.3e-81 307.4 245 63.3
GSVIVG01032259001 Vitis vinifera HOM05D007036 ORTHO05D008885 2.8e-81 306.2 231 66.7
MD13G1233100 Malus domestica HOM05D007036 ORTHO05D008885 1.1e-80 304.3 367 48.0
DCAR_020462 Daucus carota HOM05D007036 ORTHO05D008885 1.6e-79 300.4 326 49.7
Thhalv10003041m.g Eutrema salsugineum HOM05D007036 ORTHO05D008885 1.0e-78 297.7 327 48.6
Nn5g27062 Nelumbo nucifera HOM05D007036 ORTHO05D008885 5.0e-78 295.4 236 60.6
COL.COLO4_04221 Corchorus olitorius HOM05D007036 ORTHO05D008885 1.1e-77 294.3 295 53.6
MBI13_g34303_MAGBIO Magnolia biondii HOM05D007036 ORTHO05D008885 8.0e-76 288.1 230 62.6
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 5.2e-75 285.4 327 46.8
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 6.8e-75 285.0 328 45.4
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 1.5e-74 283.9 328 46.0
ATR0626G201 Amborella trichopoda HOM05D007036 ORTHO05D008885 5.7e-74 282.0 232 60.3
CiPaw.16G103900 Carya illinoinensis HOM05D007036 ORTHO05D008885 6.3e-73 278.5 208 67.8
COL.COLO4_06173 Corchorus olitorius HOM05D007036 ORTHO05D008885 5.5e-69 265.4 271 52.4
PSO170G3146 Papaver somniferum HOM05D007036 ORTHO05D008885 6.8e-67 258.5 207 60.9
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 4.4e-66 255.8 297 44.8
Eucgr.C00064 Eucalyptus grandis HOM05D007036 ORTHO05D008885 1.0e-62 244.6 247 51.4
CDE04G2486 Ceratophyllum demersum HOM05D007036 ORTHO05D008885 2.9e-62 243.0 290 45.2
PSO063G5690 Papaver somniferum HOM05D007036 ORTHO05D008885 8.6e-62 241.5 302 43.0
CDE02G1188 Ceratophyllum demersum HOM05D007036 ORTHO05D004232 1.1e-56 224.6 200 57.5
Lj5A765T51 Lonicera japonica HOM05D007036 ORTHO05D008885 3.3e-45 186.4 166 54.2
Oeu028822.1 Olea europaea HOM05D007036 ORTHO05D008885 2.2e-41 173.7 150 57.3
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 2.1e-31 140.6 233 38.2
vmacro20769 Vaccinium macrocarpon HOM05D007036 ORTHO05D008885 3.6e-28 129.8 221 36.2
Dinv26474 Davidia involucrata HOM05D007036 ORTHO05D008885 2.6e-26 123.6 190 37.9
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 6.4e-25 119.0 149 47.0
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.9e-24 117.5 198 36.9
AagrBONN_evm.TU.Sc2ySwM_228.1431 Anthoceros agrestis HOM05D007036 ORTHO05D008885 1.2e-23 114.8 166 38.0
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.5e-13 81.3 149 36.2
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 1.8e-11 74.3 244 28.7
Medtr6g034745 Medicago truncatula HOM05D007036 ORTHO05D008885 1.3e-09 68.2 40 75.0
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 1.6e-07 61.2 202 27.7


User provided reference genes

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