Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g066760 Medicago truncatula HOM05D007802 ORTHO05D009879 5.5e-41 170.6 92 100.0
TPR.G38823 Trifolium pratense HOM05D007802 ORTHO05D009879 4.2e-33 144.4 92 87.0
Ca_05474_v3 Cicer arietinum L. HOM05D007802 ORTHO05D009879 6.3e-29 130.6 89 82.0
Psat2g064360 Pisum sativum HOM05D007802 ORTHO05D009879 1.3e-26 122.9 88 77.3
Glyma.02G216200 Glycine max HOM05D007802 ORTHO05D009879 2.5e-25 118.6 87 75.9
Phvul.008G183400 Phaseolus vulgaris HOM05D007802 ORTHO05D009879 3.0e-23 111.7 86 73.3
Lalb_Chr17g0344631 Lupinus albus HOM05D007802 ORTHO05D009879 2.6e-22 108.6 87 70.1
arahy.Tifrunner.gnm1.ann1.6VNW8E Arachis hypogaea HOM05D007802 ORTHO05D009879 1.2e-19 99.8 90 63.3
RcHm_v2.0_Chr7g0233751 Rosa chinensis HOM05D007802 ORTHO05D009879 4.0e-15 84.7 66 65.2
Dinv42589 Davidia involucrata HOM05D007802 ORTHO05D009879 8.8e-15 83.6 88 59.1
MD08G1204900 Malus domestica HOM05D007802 ORTHO05D009879 8.8e-15 83.6 67 67.2
Nn5g29812 Nelumbo nucifera HOM05D007802 ORTHO05D009879 1.5e-14 82.8 65 64.6
Prupe.1G536500 Prunus persica HOM05D007802 ORTHO05D009879 3.4e-14 81.6 86 59.3
MD08G1204300 Malus domestica HOM05D007802 ORTHO05D009879 4.4e-14 81.3 65 66.2
TAR628G0546 Trochodendron aralioides HOM05D007802 ORTHO05D009879 7.5e-14 80.5 66 66.7
arahy.Tifrunner.gnm1.ann1.J1FBU0 Arachis hypogaea HOM05D007802 ORTHO05D009879 1.3e-13 79.7 82 56.1
FvH4_5g34160 Fragaria vesca HOM05D007802 ORTHO05D009879 1.3e-13 79.7 66 63.6
FvH4_4g29130 Fragaria vesca HOM05D007802 ORTHO05D009879 1.7e-13 79.3 66 66.7
FAN12G4209 Fragaria x ananassa HOM05D007802 ORTHO05D009879 1.7e-13 79.3 66 66.7
Manes.18G057100 Manihot esculenta HOM05D007802 ORTHO05D009879 3.7e-13 78.2 83 59.0
AT2G38465 Arabidopsis thaliana HOM05D007802 ORTHO05D009879 6.3e-13 77.4 69 60.9
Cpa.g.sc21.44 Carica papaya HOM05D007802 ORTHO05D009879 6.3e-13 77.4 83 51.8
BcaC02g11998 Brassica carinata HOM05D007802 ORTHO05D009879 1.1e-12 76.6 87 55.2
BolC4t22496H Brassica oleracea HOM05D007802 ORTHO05D009879 1.1e-12 76.6 87 55.2
CARHR133150 Cardamine hirsuta HOM05D007802 ORTHO05D009879 1.1e-12 76.6 65 63.1
AL4G35740 Arabidopsis lyrata HOM05D007802 ORTHO05D009879 1.4e-12 76.3 87 54.0
BcaB02g09173 Brassica carinata HOM05D007802 ORTHO05D009879 1.4e-12 76.3 87 54.0
BraA05t19725Z Brassica rapa HOM05D007802 ORTHO05D009879 1.4e-12 76.3 87 55.2
A05p07580 Brassica napus HOM05D007802 ORTHO05D009879 2.4e-12 75.5 87 55.2
C04p09060 Brassica napus HOM05D007802 ORTHO05D009879 2.4e-12 75.5 87 54.0
BolC7t44562H Brassica oleracea HOM05D007802 ORTHO05D009879 2.4e-12 75.5 65 63.1
Eucgr.F00437 Eucalyptus grandis HOM05D007802 ORTHO05D009879 3.1e-12 75.1 71 56.3
C07p40270 Brassica napus HOM05D007802 ORTHO05D009879 4.1e-12 74.7 87 54.0
GSVIVG01009214001 Vitis vinifera HOM05D007802 ORTHO05D009879 4.1e-12 74.7 79 53.2
Carub.0004s2044 Capsella rubella HOM05D007802 ORTHO05D009879 5.4e-12 74.3 87 51.7
QL09p018673 Quercus lobata HOM05D007802 ORTHO05D009879 5.4e-12 74.3 91 51.6
Oeu040885.1 Olea europaea HOM05D007802 ORTHO05D009879 7.0e-12 73.9 81 54.3
Thhalv10017501m.g Eutrema salsugineum HOM05D007802 ORTHO05D009879 9.2e-12 73.6 65 58.5
A04p29410 Brassica napus HOM05D007802 ORTHO05D009879 1.2e-11 73.2 65 61.5
BcaNung02098 Brassica carinata HOM05D007802 ORTHO05D009879 1.6e-11 72.8 65 61.5
CiPaw.08G057300 Carya illinoinensis HOM05D007802 ORTHO05D009879 2.0e-11 72.4 63 63.5
Cc10_g08360 Coffea canephora HOM05D007802 ORTHO05D009879 2.7e-11 72.0 91 48.4
CANSAT78G0113 Cannabis sativa HOM05D007802 ORTHO05D009879 3.5e-11 71.6 62 62.9
Sabra02G0086800 Salix brachista HOM05D007802 ORTHO05D009879 3.5e-11 71.6 66 56.1
Glyma.14G183300 Glycine max HOM05D007802 ORTHO05D009879 5.9e-11 70.9 45 80.0
BcaB06g29053 Brassica carinata HOM05D007802 ORTHO05D009879 7.8e-11 70.5 65 55.4
Aa31LG1G14150 Aethionema arabicum HOM05D007802 ORTHO05D009879 1.0e-10 70.1 80 56.2
Cfa013816 Carpinus fangiana HOM05D007802 ORTHO05D009879 1.0e-10 70.1 72 55.6
CSS0046125 Camellia sinensis var. sinensis HOM05D007802 ORTHO05D009879 2.3e-10 68.9 67 55.2
AUR62014370 Chenopodium quinoa HOM05D007802 ORTHO05D009879 2.9e-10 68.6 88 46.6
Ciclev10002961m.g Citrus clementina HOM05D007802 ORTHO05D009879 2.9e-10 68.6 86 45.3
Haze_22490 Corylus avellana HOM05D007802 ORTHO05D009879 2.9e-10 68.6 80 50.0
THA.LOC104806901 Tarenaya hassleriana HOM05D007802 ORTHO05D009879 2.9e-10 68.6 65 58.5
Thecc.08G074100 Theobroma cacao HOM05D007802 ORTHO05D009879 2.9e-10 68.6 65 58.5
AUR62019113 Chenopodium quinoa HOM05D007802 ORTHO05D009879 3.8e-10 68.2 67 53.7
FAN07G2104 Fragaria x ananassa HOM05D007802 ORTHO05D009879 6.6e-10 67.4 59 61.0
MELO3C011071.2 Cucumis melo HOM05D007802 ORTHO05D009879 8.6e-10 67.0 93 46.2
Sp4g20790 Schrenkiella parvula HOM05D007802 ORTHO05D009879 1.5e-09 66.2 87 52.9
Sed0007651 Sechium edule HOM05D007802 ORTHO05D009879 1.5e-09 66.2 79 49.4
ClCG08G011540 Citrullus lanatus HOM05D007802 ORTHO05D009879 1.9e-09 65.9 70 52.9
TWI56G1155 Tripterygium wilfordii HOM05D007802 ORTHO05D009879 3.3e-09 65.1 72 52.8
Atru.chr13.972 Acer truncatum HOM05D007802 ORTHO05D009879 4.3e-09 64.7 64 53.1
FAN08G3003 Fragaria x ananassa HOM05D007802 ORTHO05D009879 5.6e-09 64.3 95 44.2
FAN18G1081 Fragaria x ananassa HOM05D007802 ORTHO05D009879 5.6e-09 64.3 95 44.2
MBI16_g07278_MAGBIO Magnolia biondii HOM05D007802 ORTHO05D009879 2.1e-08 62.4 72 48.6
Rhsim07G0213800 Rhododendron simsii HOM05D007802 ORTHO05D009879 2.1e-08 62.4 57 61.4
DCAR_019323 Daucus carota HOM05D007802 ORTHO05D009879 3.6e-08 61.6 89 42.7
Gorai.009G227900 Gossypium raimondii HOM05D007802 ORTHO05D009879 6.1e-08 60.8 87 42.5
Gohir.D05G220800 Gossypium hirsutum HOM05D007802 ORTHO05D009879 8.0e-08 60.5 87 42.5
Gohir.A05G216600 Gossypium hirsutum HOM05D007802 ORTHO05D009879 1.0e-07 60.1 89 41.6
HPP92_025782 Vanilla planifolia HOM05D007802 ORTHO05D009879 1.0e-07 60.1 70 48.6
PGR042G2061 Punica granatum HOM05D007802 ORTHO05D009879 4.0e-07 58.2 72 50.0
SEGI_04889 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 4.0e-07 58.2 73 47.9
Nitab4.5_0001601g0070 Nicotiana tabacum HOM05D007802 ORTHO05D009879 5.2e-07 57.8 67 46.3
Nitab4.5_0003852g0060 Nicotiana tabacum HOM05D007802 ORTHO05D009879 6.8e-07 57.4 60 50.0
SEGI_40405 Sequoiadendron giganteum HOM05D007802 ORTHO05D009879 6.8e-07 57.4 67 47.8
Sopen08g006790 Solanum pennellii HOM05D007802 ORTHO05D009879 2.6e-06 55.5 57 52.6
ATR0767G120 Amborella trichopoda HOM05D007802 ORTHO05D009879 3.4e-06 55.1 72 45.8
COL.COLO4_35287 Corchorus olitorius HOM05D007802 ORTHO05D009879 5.7e-06 54.3 84 39.3
Aqoxy6G00664 Aquilegia oxysepala HOM05D007802 ORTHO05D009879 7.5e-06 53.9 106 35.8
Solyc08g016415.1 Solanum lycopersicum HOM05D007802 ORTHO05D009879 9.8e-06 53.5 57 50.9


User provided reference genes

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