Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1663.3 800 100.0
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 0.0e+00 1457.6 800 87.8
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1441.0 803 85.4
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1437.9 803 84.4
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1427.5 803 84.3
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1397.1 805 83.2
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 0.0e+00 1394.0 728 92.3
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1317.0 804 78.9
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 0.0e+00 1317.0 804 78.9
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 0.0e+00 1313.9 800 79.0
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1194.9 800 71.4
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1177.9 800 70.8
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1171.4 800 69.6
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1164.1 801 69.0
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1162.9 801 69.2
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1162.1 801 68.5
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1155.6 800 69.6
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1150.6 800 68.4
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1144.8 803 68.0
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1138.3 801 67.3
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1136.7 801 67.0
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1135.6 800 67.5
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1135.2 800 69.0
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1134.4 801 67.5
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1127.9 882 63.4
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1127.1 835 65.5
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 0.0e+00 1124.0 607 90.6
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1122.8 801 67.7
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1122.5 801 65.8
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1112.4 801 66.3
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1111.3 801 67.0
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1109.4 816 66.3
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1108.2 816 66.1
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1107.4 817 64.7
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1106.7 801 66.3
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1100.9 801 66.3
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1096.3 801 66.2
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1095.9 801 66.0
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1095.1 810 64.7
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1094.0 801 66.2
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1091.3 803 64.5
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1087.4 801 64.3
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1086.6 801 65.8
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1079.7 799 66.0
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1079.7 831 63.7
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1079.7 837 62.1
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 6.6e-311 1070.5 803 64.0
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 5.4e-310 1067.4 802 64.2
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 2.7e-309 1065.1 800 62.9
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 1.7e-308 1062.4 801 62.3
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 4.7e-306 1054.3 802 63.1
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 2.2e-303 1045.4 801 62.3
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 2.9e-303 1045.0 811 61.9
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 3.2e-302 1041.6 804 62.8
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 9.2e-302 1040.0 801 61.0
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 1.2e-301 1039.6 801 61.8
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 2.1e-301 1038.9 803 61.6
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 2.3e-300 1035.4 772 64.1
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 7.3e-299 1030.4 799 61.5
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 1.6e-298 1029.2 850 58.1
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 2.1e-298 1028.9 843 59.0
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 1.4e-297 1026.2 803 62.4
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 3.1e-297 1025.0 803 60.6
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 9.0e-297 1023.5 801 61.0
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 2.0e-296 1022.3 801 61.9
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 9.9e-296 1020.0 836 59.1
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 1.7e-295 1019.2 754 63.8
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 3.8e-295 1018.1 804 62.2
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.3e-292 1009.6 799 60.5
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 2.3e-292 1008.8 803 61.3
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 8.7e-292 1006.9 803 60.9
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 8.7e-292 1006.9 803 60.9
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 6.2e-290 1000.7 803 60.5
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 6.9e-289 997.3 799 61.0
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 2.9e-287 991.9 799 60.7
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 6.4e-287 990.7 803 60.0
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 1.2e-285 986.5 803 59.7
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 1.3e-282 976.5 842 57.8
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 4.0e-281 971.5 803 58.2
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 2.0e-280 969.1 850 57.2
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 7.6e-280 967.2 801 60.4
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 4.6e-277 958.0 787 59.6
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 3.3e-275 951.8 800 56.0
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 3.3e-275 951.8 799 59.4
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 7.6e-272 940.6 803 56.8
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 5.5e-270 934.5 802 58.7
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 5.0e-263 911.4 712 64.2
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 8.8e-260 900.6 707 63.4
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.6e-235 819.3 797 51.8
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 1.6e-232 810.1 606 65.2
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 2.2e-231 806.2 598 65.1
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 7.5e-219 764.6 607 63.4
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 1.5e-211 740.3 621 57.6
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.1e-204 717.6 823 46.4
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 1.1e-198 697.6 818 45.6
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 1.7e-194 683.7 828 45.9
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 5.3e-164 582.4 533 53.7
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 5.8e-155 552.4 454 60.4
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 2.2e-154 550.4 452 61.5
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 5.3e-140 502.7 582 45.7
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 2.1e-128 464.2 461 51.8
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 1.7e-125 454.5 447 50.1
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 6.3e-125 452.6 376 59.6
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 1.0e-122 445.3 314 65.3
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.9e-122 443.7 403 55.8
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 3.7e-117 426.8 195 95.9
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 6.1e-112 409.5 468 45.7
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 6.8e-111 406.0 349 61.9
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 1.9e-76 291.6 308 51.3
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 4.6e-75 287.0 256 53.5
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 4.0e-71 273.9 148 80.4
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 7.1e-68 263.1 491 35.4
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 3.5e-67 260.8 236 56.4
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 8.7e-66 256.1 147 74.1
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 1.3e-56 225.7 121 74.4
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 4.5e-54 217.2 196 52.0
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 3.5e-51 207.6 859 25.4
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 3.9e-50 204.1 145 59.3
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.3e-39 167.2 93 73.1
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 5.3e-39 167.2 191 47.6
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 5.3e-31 140.6 84 72.6
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 6.9e-23 113.6 52 86.5
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 1.2e-22 112.8 113 49.6
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.2e-20 103.6 194 33.5
MCO09G352 Micromonas commoda HOM05D006313 ORTHO05D007853 2.6e-09 68.6 185 30.8
Medtr5g096790 Medicago truncatula HOM05D002322 ORTHO05D002536 9.7e-09 66.6 124 32.3
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 2.2e-08 65.5 52 55.8
Zm00001eb305500 Zea mays HOM05D000563 ORTHO05D000536 2.2e-08 65.5 162 31.5
DCAR_011734 Daucus carota HOM05D000563 ORTHO05D000536 1.4e-07 62.8 171 31.6
Sed0005870 Sechium edule HOM05D001597 ORTHO05D001512 5.3e-07 60.8 277 25.3
SMO367G0758 Selaginella moellendorffii HOM05D001597 ORTHO05D001512 3.5e-06 58.2 269 25.7
HanXRQChr06g0170511 Helianthus annuus HOM05D001597 ORTHO05D001512 4.5e-06 57.8 277 25.6
Os08g0523700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.5e-06 57.8 160 30.6
PSO063G2838 Papaver somniferum HOM05D000563 ORTHO05D000536 5.9e-06 57.4 273 26.0
TWI23G0153 Tripterygium wilfordii HOM05D000563 ORTHO05D000536 5.9e-06 57.4 133 31.6
Prupe.2G260000 Prunus persica HOM05D002006 ORTHO05D002128 7.7e-06 57.0 149 28.2
TWI23G0118 Tripterygium wilfordii HOM05D001597 ORTHO05D001512 7.7e-06 57.0 282 27.3


User provided reference genes

Program Settings