Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 3.2e-202 708.4 398 100.0
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 1.2e-188 663.3 400 94.0
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 8.2e-166 587.4 410 80.7
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 3.4e-164 582.0 397 85.9
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 4.6e-161 571.6 454 75.6
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 3.9e-160 568.5 395 80.3
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 8.8e-152 540.8 402 77.9
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 1.3e-150 537.0 339 81.7
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 8.2e-150 534.3 402 74.6
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.7e-147 526.6 407 71.0
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 3.8e-147 525.4 396 79.0
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 5.0e-147 525.0 398 78.4
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 1.1e-138 497.3 420 71.4
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 4.5e-124 448.7 329 72.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.5e-122 443.7 328 71.0
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 2.5e-122 443.0 330 70.6
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 4.7e-121 438.7 335 69.9
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 8.0e-121 438.0 389 68.4
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 3.0e-120 436.0 334 68.6
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 4.0e-120 435.6 335 69.6
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 1.5e-119 433.7 321 71.0
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 2.0e-119 433.3 330 69.4
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 2.0e-119 433.3 346 68.2
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 2.0e-119 433.3 330 69.7
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.6e-119 433.0 389 65.3
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 6.3e-118 428.3 334 67.1
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.1e-117 427.6 318 70.8
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 1.8e-117 426.8 390 65.4
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 4.1e-117 425.6 328 69.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 7.0e-117 424.9 342 66.7
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 1.2e-116 424.1 335 66.9
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 3.5e-116 422.5 337 67.7
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 1.0e-115 421.0 326 69.9
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.3e-115 419.9 333 69.1
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.9e-114 416.8 423 57.4
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 4.2e-114 415.6 337 65.6
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 7.2e-114 414.8 335 65.4
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 9.5e-114 414.5 337 65.9
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 4.7e-113 412.1 325 66.8
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 6.1e-113 411.8 326 66.6
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 1.4e-112 410.6 329 66.9
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 1.8e-112 410.2 331 68.0
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 2.3e-112 409.8 335 65.7
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 8.9e-112 407.9 335 64.8
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 2.0e-111 406.8 331 66.8
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 4.4e-111 405.6 334 63.5
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 5.7e-111 405.2 327 67.0
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 7.5e-111 404.8 320 68.4
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.2e-110 403.3 353 62.3
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 2.8e-110 402.9 331 64.7
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 3.7e-110 402.5 329 66.3
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 4.9e-110 402.1 332 65.1
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 4.9e-110 402.1 327 67.0
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.1e-109 401.0 352 63.1
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 3.2e-109 399.4 415 60.7
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 4.1e-109 399.1 332 65.1
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 7.0e-109 398.3 328 64.9
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 7.0e-109 398.3 328 64.9
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 1.6e-108 397.1 337 64.4
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 1.6e-108 397.1 325 65.8
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.0e-108 396.7 333 64.3
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 2.0e-108 396.7 407 61.4
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 2.0e-108 396.7 334 63.8
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.3e-107 394.0 407 60.2
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 1.7e-107 393.7 330 64.5
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 1.7e-107 393.7 335 64.5
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.7e-107 393.7 407 60.4
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.7e-107 393.7 398 57.0
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 2.9e-107 392.9 413 60.3
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.5e-106 390.6 334 63.8
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 3.3e-106 389.4 332 64.2
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 4.3e-106 389.0 415 58.3
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.3e-106 389.0 337 62.0
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 5.6e-106 388.7 333 64.0
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 9.5e-106 387.9 333 63.1
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 1.2e-105 387.5 413 58.4
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 1.2e-105 387.5 334 63.2
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 1.2e-105 387.5 336 61.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.2e-105 387.5 368 58.4
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 1.2e-105 387.5 356 60.7
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 8.0e-105 384.8 334 63.8
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 4.0e-104 382.5 327 63.0
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 5.8e-103 378.6 341 59.5
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 7.5e-103 378.3 386 57.3
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 7.5e-103 378.3 290 67.6
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 7.5e-103 378.3 347 60.5
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 1.7e-102 377.1 301 65.1
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 4.9e-102 375.6 315 62.9
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 6.4e-102 375.2 320 64.7
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 1.1e-101 374.4 320 64.7
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 1.4e-101 374.0 331 62.8
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.4e-101 373.2 285 68.8
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 3.2e-101 372.9 416 55.5
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 7.0e-101 371.7 345 58.0
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 2.1e-97 360.1 293 64.2
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 2.3e-96 356.7 338 58.9
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 3.1e-96 356.3 289 65.7
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 6.8e-96 355.1 369 55.6
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 3.2e-93 346.3 332 55.7
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-92 343.6 520 47.5
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 1.7e-91 340.5 438 48.6
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 2.3e-91 340.1 290 64.5
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 3.9e-91 339.3 309 60.5
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 1.5e-90 337.4 403 52.4
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 2.0e-87 327.0 325 57.5
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 2.2e-86 323.6 298 56.4
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 8.3e-86 321.6 298 56.0
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 3.2e-85 319.7 309 58.6
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 4.1e-85 319.3 341 52.8
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 9.6e-82 308.1 313 57.2
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 4.6e-76 289.3 290 57.9
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.8e-72 277.3 227 65.6
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 3.6e-65 253.1 219 63.0
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 7.4e-58 228.8 217 58.1
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 9.6e-58 228.4 408 38.0
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 9.0e-56 221.9 329 40.4
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 8.7e-51 205.3 312 45.2
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 8.2e-49 198.7 138 73.2
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 1.2e-47 194.9 177 62.1
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 3.3e-42 176.8 229 58.1
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 1.4e-40 171.4 159 59.7
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 5.3e-40 169.5 112 78.6
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.5e-37 160.6 115 68.7
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 2.1e-36 157.5 162 53.7
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.1e-36 157.5 222 54.5
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 3.6e-36 156.8 384 32.6
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.8e-35 154.5 332 34.9
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 6.9e-32 142.5 362 31.8
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 2.2e-30 137.5 218 43.1
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 7.9e-28 129.0 98 65.3
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 2.2e-25 120.9 177 44.6
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 7.7e-23 112.5 83 67.5
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 1.0e-22 112.1 69 81.2
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.9e-22 110.5 167 39.5
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 2.7e-20 104.0 63 84.1
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 4.7e-20 103.2 135 50.4
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.8e-19 101.3 61 82.0
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.3e-19 100.9 81 65.4
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 4.0e-19 100.1 135 47.4
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 5.2e-19 99.8 63 77.8
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 1.1e-18 98.6 100 53.0
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 1.1e-18 98.6 61 80.3
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 2.8e-17 94.0 63 73.0
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 6.3e-17 92.8 160 36.9
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 4.1e-16 90.1 114 47.4
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 1.6e-15 88.2 68 66.2
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-14 85.1 70 71.4
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.1e-13 82.0 91 54.9
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 7.2e-13 79.3 335 23.9
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 3.0e-11 73.9 324 26.9
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 2.2e-09 67.8 110 43.6
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 1.1e-08 65.5 33 93.9
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 7.7e-07 59.3 60 50.0
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 1.0e-06 58.9 125 31.2


User provided reference genes

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