Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g063910 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-102 375.9 186 100.0
Medtr3g087410 Medicago truncatula HOM05D003216 ORTHO05D002268 5.7e-61 238.0 158 74.1
Medtr8g468040 Medicago truncatula HOM05D003216 ORTHO05D002268 7.7e-58 227.6 172 68.6
Medtr6g035400 Medicago truncatula HOM05D003216 ORTHO05D002268 3.9e-54 215.3 170 65.9
Medtr3g044770 Medicago truncatula HOM05D003216 ORTHO05D002268 7.7e-50 201.1 172 59.9
Medtr2g061890 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-43 178.7 170 57.1
Medtr5g006100 Medicago truncatula HOM05D003216 ORTHO05D004526 2.9e-41 172.6 172 54.7
Medtr5g039360 Medicago truncatula HOM05D003216 ORTHO05D002268 7.5e-37 157.9 83 86.7
Medtr7g056013 Medicago truncatula HOM05D003216 ORTHO05D002268 7.5e-37 157.9 170 52.4
Medtr1g023090 Medicago truncatula HOM05D003216 ORTHO05D002268 4.5e-34 148.7 172 50.6
Medtr1g101180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-32 143.7 177 47.5
Medtr1g103800 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-32 143.3 177 46.9
Medtr3g072200 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-32 143.3 173 46.8
Medtr7g006230 Medicago truncatula HOM05D003216 ORTHO05D002268 3.6e-31 139.0 172 47.7
Medtr1g051465 Medicago truncatula HOM05D003216 ORTHO05D002268 4.7e-31 138.7 171 46.8
Medtr2g436740 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-30 136.7 172 47.1
Medtr4g132765 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-30 136.7 170 47.1
Medtr5g062340 Medicago truncatula HOM05D003216 ORTHO05D002268 6.8e-30 134.8 172 46.5
Medtr1g015680 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-29 133.7 172 46.5
Medtr6g084230 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-29 133.7 79 73.4
Medtr8g017510 Medicago truncatula HOM05D003216 ORTHO05D002268 3.4e-29 132.5 79 73.4
Medtr2g096070 Medicago truncatula HOM05D003216 ORTHO05D002268 9.8e-29 131.0 177 44.6
Medtr4g113170 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-28 130.6 167 46.1
Medtr5g413325 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-28 130.6 177 45.2
Medtr7g055617 Medicago truncatula HOM05D003216 ORTHO05D002268 6.3e-28 128.3 173 46.2
Medtr2g026620 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-27 127.5 172 45.3
Medtr7g029645 Medicago truncatula HOM05D003216 ORTHO05D002268 3.1e-27 125.9 177 44.1
Medtr6g008490 Medicago truncatula HOM05D003216 ORTHO05D002268 9.1e-27 124.4 169 45.6
TPR.G39548 Trifolium pratense HOM05D003216 ORTHO05D002268 2.7e-26 122.9 156 46.2
Medtr5g028280 Medicago truncatula HOM05D003216 ORTHO05D002268 3.8e-25 119.0 173 42.8
Medtr2g060930 Medicago truncatula HOM05D003216 ORTHO05D002268 8.6e-25 117.9 163 44.8
Medtr3g467680 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-24 117.1 110 60.9
Medtr1g035110 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-24 116.7 169 44.4
Medtr3g014480 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-24 116.7 173 41.0
Medtr5g045990 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-24 116.7 132 50.0
Medtr2g069260 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-24 115.9 105 61.9
Medtr8g028025 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-23 113.6 166 46.4
Medtr4g054170 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-23 113.2 167 42.5
Medtr7g033500 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-23 113.2 149 41.6
Medtr4g015450 Medicago truncatula HOM05D003216 ORTHO05D010126 3.4e-21 105.9 116 47.4
Medtr6g059570 Medicago truncatula HOM05D003216 ORTHO05D002268 4.4e-21 105.5 182 36.8
Medtr4g048540 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-20 104.0 126 42.1
Medtr0700s0010 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-20 103.6 58 77.6
Medtr6g059580 Medicago truncatula HOM05D003216 ORTHO05D002268 3.7e-20 102.4 119 44.5
Medtr6g059590 Medicago truncatula HOM05D003216 ORTHO05D002268 8.3e-20 101.3 119 45.4
Medtr2g451140 Medicago truncatula HOM05D003216 ORTHO05D002268 1.1e-19 100.9 59 78.0
Medtr3g032550 Medicago truncatula HOM05D003216 ORTHO05D002268 1.8e-19 100.1 155 38.1
Medtr0116s0060 Medicago truncatula HOM05D003216 ORTHO05D002268 4.1e-19 99.0 126 50.8
Medtr5g060540 Medicago truncatula HOM05D003216 ORTHO05D002268 9.2e-19 97.8 91 49.5
Medtr1g081010 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-18 97.4 156 40.4
Medtr3g437080 Medicago truncatula HOM05D003216 ORTHO05D002268 1.6e-18 97.1 85 50.6
Medtr2g034775 Medicago truncatula HOM05D003216 ORTHO05D002268 2.0e-18 96.7 85 51.8
Medtr5g018790 Medicago truncatula HOM05D003216 ORTHO05D002268 1.7e-17 93.6 168 36.9
Medtr5g017770 Medicago truncatula HOM05D003216 ORTHO05D002268 2.9e-17 92.8 83 49.4
Medtr8g463980 Medicago truncatula HOM05D003216 ORTHO05D002268 2.9e-17 92.8 171 33.3
Medtr1g052890 Medicago truncatula HOM05D003216 ORTHO05D004526 3.9e-17 92.4 148 39.2
Medtr2g461930 Medicago truncatula HOM05D003216 ORTHO05D002268 5.0e-17 92.0 125 38.4
TPR.G7282 Trifolium pratense HOM05D003216 ORTHO05D002268 8.6e-17 91.3 149 36.9
Medtr8g463970 Medicago truncatula HOM05D003216 ORTHO05D002268 1.9e-16 90.1 85 44.7
Medtr5g071980 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-16 89.4 80 50.0
Medtr8g020437 Medicago truncatula HOM05D003216 ORTHO05D002268 3.3e-16 89.4 86 43.0
TPR.G19405 Trifolium pratense HOM05D003216 ORTHO05D002268 4.3e-16 89.0 161 35.4
TPR.G28459 Trifolium pratense HOM05D003216 ORTHO05D002268 4.3e-16 89.0 169 35.5
Medtr2g030885 Medicago truncatula HOM05D003216 ORTHO05D002268 7.3e-16 88.2 126 47.6
Medtr7g095760 Medicago truncatula HOM05D003216 ORTHO05D002268 7.3e-16 88.2 172 37.8
Medtr1g016820 Medicago truncatula HOM05D003216 ORTHO05D002268 9.5e-16 87.8 172 34.9
TPR.G17604 Trifolium pratense HOM05D003216 ORTHO05D002268 1.6e-15 87.0 105 41.0
Medtr0325s0020 Medicago truncatula HOM05D003444 ORTHO05D003963 2.1e-15 86.7 110 45.5
Medtr6g004370 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-14 84.0 85 44.7
Medtr7g069450 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-14 84.0 98 45.9
TPR.G17160 Trifolium pratense HOM05D003216 ORTHO05D002268 1.8e-14 83.6 147 33.3
TPR.G14065 Trifolium pratense HOM05D003216 ORTHO05D002268 4.0e-14 82.4 105 38.1
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 6.8e-14 81.6 106 40.6
TPR.G14425 Trifolium pratense HOM05D003216 ORTHO05D002268 6.8e-14 81.6 106 39.6
Medtr2g067680 Medicago truncatula HOM05D003216 ORTHO05D002268 8.9e-14 81.3 149 38.3
TPR.G25329 Trifolium pratense HOM05D009380 ORTHO05D009933 8.9e-14 81.3 110 37.3
TPR.G1696 Trifolium pratense HOM05D009380 ORTHO05D009933 1.2e-13 80.9 106 40.6
TPR.G1751 Trifolium pratense HOM05D003216 ORTHO05D002268 5.8e-13 78.6 87 43.7
TPR.G29741 Trifolium pratense HOM05D000593 ORTHO05D002268 5.8e-13 78.6 164 33.5
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 9.8e-13 77.8 112 40.2
Medtr2g461120 Medicago truncatula HOM05D003216 ORTHO05D002268 1.3e-12 77.4 81 44.4
TPR.G754 Trifolium pratense HOM05D003216 ORTHO05D002268 1.7e-12 77.0 126 34.9
TPR.G31202 Trifolium pratense HOM05D009380 ORTHO05D009933 2.2e-12 76.6 106 38.7
TPR.G8656 Trifolium pratense HOM05D003216 ORTHO05D002268 2.2e-12 76.6 187 32.1
Medtr3g026360 Medicago truncatula HOM05D003216 ORTHO05D002268 4.9e-12 75.5 102 40.2
Medtr5g046800 Medicago truncatula HOM05D003216 ORTHO05D002268 6.4e-12 75.1 93 47.3
Medtr2g066190 Medicago truncatula HOM05D003216 ORTHO05D002268 8.3e-12 74.7 121 34.7
Medtr4g065057 Medicago truncatula HOM05D003216 ORTHO05D002268 1.4e-11 73.9 152 36.8
Medtr8g445710 Medicago truncatula HOM05D003216 ORTHO05D002268 3.2e-11 72.8 145 35.9
Medtr2g105460 Medicago truncatula HOM05D003216 ORTHO05D004526 4.1e-11 72.4 138 39.9
TPR.G30425 Trifolium pratense HOM05D003216 ORTHO05D002268 5.4e-11 72.0 85 38.8
Medtr8g040220 Medicago truncatula HOM05D003216 ORTHO05D002268 7.0e-11 71.6 85 44.7
TPR.G36380 Trifolium pratense HOM05D003216 ORTHO05D002268 9.2e-11 71.2 93 39.8
Medtr4g050580 Medicago truncatula HOM05D003216 ORTHO05D002268 1.2e-10 70.9 61 50.8
Medtr5g037560 Medicago truncatula HOM05D003216 ORTHO05D002268 2.0e-10 70.1 61 49.2
Atru.chr11.22 Acer truncatum HOM05D000593 ORTHO05D000562 3.0e-09 66.2 169 32.0
Atru.chr11.19 Acer truncatum HOM05D000593 ORTHO05D000562 3.9e-09 65.9 169 32.0
Oeu035640.1 Olea europaea HOM05D000593 ORTHO05D000562 1.1e-08 64.3 113 33.6
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 1.5e-08 63.9 66 40.9
Medtr8g073180 Medicago truncatula HOM05D003216 ORTHO05D002268 1.5e-08 63.9 75 44.0
Phvul.008G000100 Phaseolus vulgaris HOM05D000593 ORTHO05D000562 2.5e-08 63.2 149 28.2
Medtr1g054775 Medicago truncatula HOM05D000003 ORTHO05D000004 3.3e-08 62.8 64 57.8
TWI59G0546 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.3e-08 62.4 71 40.8
CANSAT64G1746 Cannabis sativa HOM05D000593 ORTHO05D002268 5.6e-08 62.0 64 46.9
CANSAT64G1841 Cannabis sativa HOM05D000593 ORTHO05D002268 5.6e-08 62.0 64 46.9
AUR62008504 Chenopodium quinoa HOM05D012566 ORTHO05D000562 5.6e-08 62.0 67 37.3
Medtr6g059560 Medicago truncatula HOM05D003216 ORTHO05D002268 5.6e-08 62.0 128 33.6
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 7.3e-08 61.6 93 34.4
TWI79G0011 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 7.3e-08 61.6 82 35.4
Ca_07719_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 9.5e-08 61.2 143 34.3
Ca_11017_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 9.5e-08 61.2 143 35.0
Medtr7g063590 Medicago truncatula HOM05D003216 ORTHO05D002268 9.5e-08 61.2 124 39.5
Medtr8g446690 Medicago truncatula HOM05D003216 ORTHO05D002268 9.5e-08 61.2 72 37.5
AUR62022257 Chenopodium quinoa HOM05D012566 ORTHO05D000562 1.2e-07 60.8 67 37.3
TWI12G0007 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.2e-07 60.8 84 39.3
TWI12G1095 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 1.2e-07 60.8 84 39.3
Medtr1g036180 Medicago truncatula HOM05D003216 ORTHO05D002268 2.1e-07 60.1 182 28.0
Hma1.2p1_1172F.1_g263670 Hydrangea macrophylla HOM05D000593 ORTHO05D002268 2.8e-07 59.7 149 33.6
Medtr4g019660 Medicago truncatula HOM05D003216 ORTHO05D002268 2.8e-07 59.7 52 44.2
TWI75G0252 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 3.6e-07 59.3 82 35.4
TWI14G0423 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.7e-07 58.9 74 41.9
Medtr3g088130 Medicago truncatula HOM05D003216 ORTHO05D002268 6.2e-07 58.5 67 35.8
TWI60G0828 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 6.2e-07 58.5 84 36.9
TPR.G953 Trifolium pratense HOM05D003216 ORTHO05D002268 1.1e-06 57.8 98 36.7
TWI36G1263 Tripterygium wilfordii HOM05D003216 ORTHO05D002268 1.1e-06 57.8 59 40.7
CSS0028555 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.4e-06 57.4 71 36.6
ECA238G3672 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.4e-06 57.4 76 38.2
CSS0006571 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.8e-06 57.0 74 36.5
CSS0033855 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.8e-06 57.0 74 36.5
AUR62039874 Chenopodium quinoa HOM05D012566 ORTHO05D000562 1.8e-06 57.0 67 34.3
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.8e-06 57.0 63 39.7
ECA234G4672 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.8e-06 57.0 76 38.2
ECA247G0588 Erigeron canadensis HOM05D000593 ORTHO05D000562 1.8e-06 57.0 108 33.3
ECA232G1857 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA233G3236 Erigeron canadensis HOM05D003488 ORTHO05D004214 2.3e-06 56.6 76 38.2
ECA233G3263 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA233G6058 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.3e-06 56.6 76 38.2
ECA234G1628 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA234G2807 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA236G0208 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA236G1496 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA236G2721 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA240G0915 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA246G4274 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA247G2217 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA248G3414 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA248G3528 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
ECA248G3848 Erigeron canadensis HOM05D000593 ORTHO05D000562 2.3e-06 56.6 76 38.2
SGA_v2.0_scaffold106G30618 Striga asiatica HOM05D000593 ORTHO05D002268 2.3e-06 56.6 73 37.0
SGA_v2.0_scaffold17G08149 Striga asiatica HOM05D000593 ORTHO05D002268 2.3e-06 56.6 73 37.0
SGA_v2.0_scaffold1G00721 Striga asiatica HOM05D000593 ORTHO05D002268 2.3e-06 56.6 73 37.0
SGA_v2.0_scaffold22G09752 Striga asiatica HOM05D000593 ORTHO05D002268 2.3e-06 56.6 73 37.0
SGA_v2.0_scaffold31G12776 Striga asiatica HOM05D000593 ORTHO05D002268 2.3e-06 56.6 73 37.0
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 2.3e-06 56.6 73 37.0
ECA246G0213 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.1e-06 56.2 76 38.2
MD08G1164400 Malus domestica HOM05D000593 ORTHO05D000562 3.1e-06 56.2 103 34.0
Ah.01g016220 Amaranthus hybridus HOM05D012566 ORTHO05D000562 4.0e-06 55.8 64 40.6
Ah.01g016320 Amaranthus hybridus HOM05D012566 ORTHO05D000562 4.0e-06 55.8 64 40.6
Ah.01g016390 Amaranthus hybridus HOM05D000593 ORTHO05D000562 4.0e-06 55.8 64 40.6
ECA247G2988 Erigeron canadensis HOM05D000593 ORTHO05D000562 4.0e-06 55.8 76 38.2
Lj6A78T35 Lonicera japonica HOM05D000011 ORTHO05D002639 4.0e-06 55.8 73 42.5
RcHm_v2.0_Chr7g0206311 Rosa chinensis HOM05D000593 ORTHO05D000562 4.0e-06 55.8 99 34.3
TWI31G0828 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 4.0e-06 55.8 84 38.1
TWI81G0406 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 4.0e-06 55.8 73 35.6
ECA232G4778 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.2e-06 55.5 76 38.2
ECA238G0368 Erigeron canadensis HOM05D000609 ORTHO05D000462 5.2e-06 55.5 59 44.1
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 5.2e-06 55.5 69 39.1
ECA248G3349 Erigeron canadensis HOM05D000593 ORTHO05D000562 5.2e-06 55.5 76 38.2
Rhsim06G0090900 Rhododendron simsii HOM05D003216 ORTHO05D002268 5.2e-06 55.5 100 34.0
SGA_v2.0_scaffold126G33866 Striga asiatica HOM05D000593 ORTHO05D002268 5.2e-06 55.5 73 37.0
AUR62015704 Chenopodium quinoa HOM05D012566 ORTHO05D000562 6.8e-06 55.1 57 40.4
AUR62015706 Chenopodium quinoa HOM05D012566 ORTHO05D000562 6.8e-06 55.1 57 40.4
ECA233G3926 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.8e-06 55.1 76 36.8
ECA234G2878 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.8e-06 55.1 76 36.8
ECA236G2552 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.8e-06 55.1 73 38.4
ECA247G1019 Erigeron canadensis HOM05D000593 ORTHO05D000562 6.8e-06 55.1 76 38.2
TWI75G1234 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 6.8e-06 55.1 151 31.8
Ca_25321_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 8.9e-06 54.7 91 36.3
ECA233G2871 Erigeron canadensis HOM05D000593 ORTHO05D000562 8.9e-06 54.7 109 31.2
ECA238G0142 Erigeron canadensis HOM05D000593 ORTHO05D000562 8.9e-06 54.7 76 36.8
FvH4_7g04391 Fragaria vesca HOM05D000593 ORTHO05D000562 8.9e-06 54.7 76 31.6
Medtr7g067030 Medicago truncatula HOM05D003216 ORTHO05D002268 8.9e-06 54.7 47 68.1


User provided reference genes

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