Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 9.7e-73 276.9 163 100.0
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 9.7e-41 170.6 198 60.1
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 4.1e-39 165.2 163 66.3
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 2.0e-38 162.9 163 65.6
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 2.0e-38 162.9 163 65.6
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 7.2e-36 154.5 175 64.0
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 3.5e-30 135.6 166 59.6
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 7.7e-30 134.4 100 62.0
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 3.8e-29 132.1 166 59.0
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 3.4e-25 119.0 152 59.2
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 4.9e-24 115.2 93 62.4
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 2.1e-19 99.8 161 55.9
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 1.3e-13 80.5 100 44.0
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 2.3e-13 79.7 94 41.5
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 2.3e-13 79.7 74 50.0
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 3.0e-13 79.3 93 41.9
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 3.0e-13 79.3 99 44.4
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 3.9e-13 79.0 89 46.1
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 3.9e-13 79.0 96 44.8
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 3.9e-13 79.0 173 48.6
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 3.9e-13 79.0 99 41.4
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 6.6e-13 78.2 90 41.1
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 8.6e-13 77.8 92 40.2
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 1.9e-12 76.6 92 45.7
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 2.5e-12 76.3 102 44.1
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 3.3e-12 75.9 97 41.2
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 4.3e-12 75.5 99 47.5
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 5.6e-12 75.1 98 39.8
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 5.6e-12 75.1 93 41.9
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 7.3e-12 74.7 114 36.8
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 9.5e-12 74.3 81 44.4
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 9.5e-12 74.3 89 47.2
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 1.2e-11 73.9 94 46.8
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 1.6e-11 73.6 91 37.4
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 2.8e-11 72.8 65 47.7
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 2.8e-11 72.8 144 49.3
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 4.7e-11 72.0 89 39.3
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 8.0e-11 71.2 98 36.7
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 1.1e-10 70.9 97 38.1
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 1.1e-10 70.9 95 61.1
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 1.1e-10 70.9 97 39.2
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 1.8e-10 70.1 93 40.9
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 2.6e-09 66.2 94 37.2
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 3.4e-09 65.9 159 45.9
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 9.8e-09 64.3 98 37.8
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 1.3e-08 63.9 44 61.4
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 2.9e-08 62.8 42 52.4
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 3.7e-08 62.4 43 58.1
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 3.7e-08 62.4 106 35.8
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 4.9e-08 62.0 102 38.2
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 6.4e-08 61.6 94 37.2
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.1e-07 60.8 42 57.1
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 1.4e-07 60.5 92 35.9
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 2.4e-07 59.7 96 40.6
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 2.4e-07 59.7 44 54.5
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.2e-07 59.3 44 56.8
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.2e-07 59.3 44 56.8
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 3.2e-07 59.3 44 56.8
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 5.4e-07 58.5 93 35.5
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 7.1e-07 58.2 100 33.0
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 7.1e-07 58.2 93 36.6
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 9.2e-07 57.8 67 43.3
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 9.2e-07 57.8 101 59.4
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 9.2e-07 57.8 44 52.3
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 2.1e-06 56.6 97 38.1
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 2.1e-06 56.6 43 53.5
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 3.5e-06 55.8 91 37.4
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 4.6e-06 55.5 44 50.0
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 7.8e-06 54.7 94 34.0


User provided reference genes

Program Settings