Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g061510 Medicago truncatula HOM05D000029 ORTHO05D028700 1.7e-83 313.9 391 100.0
Medtr5g090100 Medicago truncatula HOM05D000029 ORTHO05D000854 5.0e-43 179.5 105 95.2
TPR.G24739 Trifolium pratense HOM05D000029 ORTHO05D000854 3.0e-35 153.7 106 79.2
Psat2g019520 Pisum sativum HOM05D000029 ORTHO05D000854 8.6e-35 152.1 106 82.1
Ca_06226_v3 Cicer arietinum L. HOM05D000029 ORTHO05D000854 1.4e-24 118.2 76 81.6
Lalb_Chr17g0348051 Lupinus albus HOM05D000029 ORTHO05D000854 1.9e-21 107.8 104 63.5
Lalb_Chr04g0249091 Lupinus albus HOM05D000029 ORTHO05D000854 7.1e-21 105.9 105 62.9
Glyma.02G281100 Glycine max HOM05D000029 ORTHO05D000854 3.5e-20 103.6 102 63.7
Glyma.14G033500 Glycine max HOM05D000029 ORTHO05D000854 4.6e-20 103.2 97 63.9
Glyma.18G116800 Glycine max HOM05D000029 ORTHO05D000854 1.0e-19 102.1 101 60.4
arahy.Tifrunner.gnm1.ann1.2KE7WA Arachis hypogaea HOM05D000029 ORTHO05D000854 1.3e-19 101.7 104 57.7
arahy.Tifrunner.gnm1.ann1.H2V78R Arachis hypogaea HOM05D000029 ORTHO05D000854 1.3e-19 101.7 104 57.7
Medtr3g449390 Medicago truncatula HOM05D000029 ORTHO05D000854 2.3e-19 100.9 107 62.6
Lj6g0007349 Lotus japonicus HOM05D000029 ORTHO05D000854 1.9e-18 97.8 112 58.9
LjContig00049g0009920 Lotus japonicus HOM05D000029 ORTHO05D000854 2.5e-18 97.4 109 57.8
Glyma.08G302900 Glycine max HOM05D000029 ORTHO05D000854 1.1e-16 92.0 102 56.9
TPR.G8482 Trifolium pratense HOM05D000029 ORTHO05D000854 1.8e-16 91.3 96 59.4
VMungo0647G2523 Vigna mungo HOM05D000029 ORTHO05D000854 3.1e-16 90.5 104 56.7
Duzib248G0773 Durio zibethinus HOM05D000029 ORTHO05D000854 5.2e-16 89.7 95 55.8
A03p52390 Brassica napus HOM05D000029 ORTHO05D000854 6.9e-16 89.4 101 55.4
BraA03t14316Z Brassica rapa HOM05D000029 ORTHO05D000854 1.2e-15 88.6 101 55.4
Psat5g195160 Pisum sativum HOM05D000029 ORTHO05D000854 1.5e-15 88.2 90 66.7
VMungo0540G2243 Vigna mungo HOM05D000029 ORTHO05D000854 1.5e-15 88.2 101 55.4
COL.COLO4_25015 Corchorus olitorius HOM05D000029 ORTHO05D000854 2.6e-15 87.4 103 51.5
BcaNung03498 Brassica carinata HOM05D000029 ORTHO05D000854 3.4e-15 87.0 101 54.5
BolC7t45582H Brassica oleracea HOM05D000029 ORTHO05D000854 3.4e-15 87.0 101 54.5
C07p50840 Brassica napus HOM05D000029 ORTHO05D000854 7.6e-15 85.9 101 54.5
Phvul.006G029000 Phaseolus vulgaris HOM05D000029 ORTHO05D000854 7.6e-15 85.9 99 53.5
TWI38G0295 Tripterygium wilfordii HOM05D000029 ORTHO05D000854 1.3e-14 85.1 96 59.4
MD05G1241900 Malus domestica HOM05D000029 ORTHO05D000854 2.9e-14 84.0 104 54.8
MD10G1223800 Malus domestica HOM05D000029 ORTHO05D000854 3.8e-14 83.6 101 54.5
CSS0035698 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 4.9e-14 83.2 93 55.9
Hma1.2p1_0008F-2.1_g005820 Hydrangea macrophylla HOM05D000029 ORTHO05D000854 4.9e-14 83.2 76 60.5
CSS0014116 Camellia sinensis var. sinensis HOM05D000029 ORTHO05D000854 6.4e-14 82.8 99 55.6
Thecc.02G000500 Theobroma cacao HOM05D000029 ORTHO05D000854 1.1e-13 82.0 92 52.2
BcaB03g11663 Brassica carinata HOM05D000029 ORTHO05D000854 2.4e-13 80.9 105 49.5
BcaC06g30649 Brassica carinata HOM05D000029 ORTHO05D000854 3.2e-13 80.5 98 53.1
DCAR_004365 Daucus carota HOM05D000029 ORTHO05D000854 3.2e-13 80.5 90 57.8
HanXRQChr09g0257701 Helianthus annuus HOM05D000029 ORTHO05D000854 3.2e-13 80.5 107 49.5
BraA01t01139Z Brassica rapa HOM05D000029 ORTHO05D000854 4.2e-13 80.1 99 52.5
CiPaw.10G108600 Carya illinoinensis HOM05D000029 ORTHO05D000854 7.1e-13 79.3 104 53.8
THA.LOC104806231 Tarenaya hassleriana HOM05D000029 ORTHO05D000854 7.1e-13 79.3 106 53.8
BcaC09g51325 Brassica carinata HOM05D000029 ORTHO05D000854 9.3e-13 79.0 99 52.5
C01p14240 Brassica napus HOM05D000029 ORTHO05D000854 9.3e-13 79.0 99 52.5
C03p82860 Brassica napus HOM05D000029 ORTHO05D000854 9.3e-13 79.0 105 47.6
BolC1t01389H Brassica oleracea HOM05D000029 ORTHO05D000854 9.3e-13 79.0 99 52.5
BolC3t20568H Brassica oleracea HOM05D000029 ORTHO05D000854 9.3e-13 79.0 105 47.6
QL11p010696 Quercus lobata HOM05D000029 ORTHO05D000854 9.3e-13 79.0 99 53.5
Lj1C1153T2 Lonicera japonica HOM05D000029 ORTHO05D000854 2.1e-12 77.8 96 52.1
A08p14730 Brassica napus HOM05D000029 ORTHO05D000854 2.7e-12 77.4 105 46.7
BraA08t33459Z Brassica rapa HOM05D000029 ORTHO05D000854 2.7e-12 77.4 105 46.7
Gohir.D02G240000 Gossypium hirsutum HOM05D000029 ORTHO05D000854 2.7e-12 77.4 101 49.5
Gorai.005G268400 Gossypium raimondii HOM05D000029 ORTHO05D000854 2.7e-12 77.4 101 49.5
Prupe.4G121500 Prunus persica HOM05D000029 ORTHO05D000854 2.7e-12 77.4 104 51.0
TAR624G0195 Trochodendron aralioides HOM05D000029 ORTHO05D000854 2.7e-12 77.4 95 55.8
A01p11970 Brassica napus HOM05D000029 ORTHO05D000854 3.5e-12 77.0 99 50.5
vmacro03575 Vaccinium macrocarpon HOM05D000029 ORTHO05D000854 3.5e-12 77.0 107 46.7
Carub.0007s2090 Capsella rubella HOM05D000029 ORTHO05D000854 7.8e-12 75.9 101 50.5
CARHR227100 Cardamine hirsuta HOM05D000029 ORTHO05D000854 7.8e-12 75.9 97 54.6
Ciclev10014145m.g Citrus clementina HOM05D000029 ORTHO05D000854 7.8e-12 75.9 97 53.6
BcaC01g00663 Brassica carinata HOM05D000029 ORTHO05D000854 1.3e-11 75.1 103 47.6
Haze_05183 Corylus avellana HOM05D000029 ORTHO05D000854 1.3e-11 75.1 96 53.1
AT4G20270 Arabidopsis thaliana HOM05D000029 ORTHO05D000854 1.7e-11 74.7 97 49.5
Atru.chr10.201 Acer truncatum HOM05D000029 ORTHO05D000854 2.3e-11 74.3 102 52.0
Thhalv10024310m.g Eutrema salsugineum HOM05D000029 ORTHO05D000854 2.3e-11 74.3 100 50.0
Gohir.A03G218000 Gossypium hirsutum HOM05D000029 ORTHO05D000854 2.3e-11 74.3 101 48.5
RcHm_v2.0_Chr5g0022141 Rosa chinensis HOM05D000029 ORTHO05D000854 2.3e-11 74.3 71 62.0
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 2.3e-11 74.3 101 51.5
GSVIVG01010073001 Vitis vinifera HOM05D000029 ORTHO05D000854 2.3e-11 74.3 101 48.5
AL7G33630 Arabidopsis lyrata HOM05D000029 ORTHO05D000854 3.9e-11 73.6 101 48.5
Manes.03G069800 Manihot esculenta HOM05D000029 ORTHO05D000854 3.9e-11 73.6 96 52.1
TAR626G1881 Trochodendron aralioides HOM05D000029 ORTHO05D000854 3.9e-11 73.6 100 52.0
Cfa001169 Carpinus fangiana HOM05D000029 ORTHO05D000854 5.1e-11 73.2 100 50.0
Dinv07943 Davidia involucrata HOM05D000029 ORTHO05D000854 5.1e-11 73.2 100 52.0
Dinv18412 Davidia involucrata HOM05D000029 ORTHO05D000854 5.1e-11 73.2 100 52.0
Manes.16G060900 Manihot esculenta HOM05D000029 ORTHO05D000854 5.1e-11 73.2 97 50.5
FAN21G3057 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-11 72.8 71 59.2
FAN25G2513 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-11 72.8 71 59.2
FAN25G3370 Fragaria x ananassa HOM05D000029 ORTHO05D000854 6.6e-11 72.8 71 59.2
Potri.001G073600 Populus trichocarpa HOM05D000029 ORTHO05D000854 6.6e-11 72.8 93 53.8
Potri.003G157300 Populus trichocarpa HOM05D000029 ORTHO05D000854 6.6e-11 72.8 90 52.2
Rhsim13G0136500 Rhododendron simsii HOM05D000029 ORTHO05D000854 6.6e-11 72.8 107 46.7
FAN16G3167 Fragaria x ananassa HOM05D000029 ORTHO05D000854 8.7e-11 72.4 71 57.7
arahy.Tifrunner.gnm1.ann1.3CY5UQ Arachis hypogaea HOM05D000345 ORTHO05D000215 1.1e-10 72.0 73 49.3
MBI06_g35672_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 1.1e-10 72.0 75 54.7
Nitab4.5_0000217g0020 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.1e-10 72.0 101 48.5
Sabra01G0051900 Salix brachista HOM05D000029 ORTHO05D000854 1.1e-10 72.0 90 52.2
MBI07_g10930_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D000854 1.5e-10 71.6 93 52.7
Cpa.g.sc30.63 Carica papaya HOM05D000029 ORTHO05D000854 1.9e-10 71.2 96 51.0
Lsat_1_v5_gn_8_107600 Lactuca sativa HOM05D000029 ORTHO05D000854 2.5e-10 70.9 98 46.9
Peaxi162Scf00736g00045 Petunia axillaris HOM05D000029 ORTHO05D000854 2.5e-10 70.9 98 44.9
FvH4_3g13410 Fragaria vesca HOM05D000029 ORTHO05D000854 4.3e-10 70.1 71 56.3
FAN11G1203 Fragaria x ananassa HOM05D000029 ORTHO05D000854 4.3e-10 70.1 71 56.3
Nn1g09859 Nelumbo nucifera HOM05D000029 ORTHO05D000854 7.3e-10 69.3 99 49.5
Aa31LG6G2700 Aethionema arabicum HOM05D000029 ORTHO05D000854 9.6e-10 68.9 98 46.9
ECA232G3093 Erigeron canadensis HOM05D000029 ORTHO05D000001 9.6e-10 68.9 75 53.3
Cc09_g04550 Coffea canephora HOM05D000029 ORTHO05D000854 1.3e-09 68.6 93 50.5
Nitab4.5_0001253g0010 Nicotiana tabacum HOM05D000029 ORTHO05D000854 1.6e-09 68.2 98 46.9
PGSC0003DMG400006280 Solanum tuberosum HOM05D000029 ORTHO05D000854 2.1e-09 67.8 106 45.3
PSO541G0028 Papaver somniferum HOM05D000029 ORTHO05D000854 2.8e-09 67.4 92 45.7
Aqoxy1G01351 Aquilegia oxysepala HOM05D000029 ORTHO05D000854 4.8e-09 66.6 96 50.0
Solyc01g080770.3 Solanum lycopersicum HOM05D000029 ORTHO05D000854 4.8e-09 66.6 107 43.9
Sopen01g030750 Solanum pennellii HOM05D000029 ORTHO05D000854 4.8e-09 66.6 107 43.9
PSO675G6359 Papaver somniferum HOM05D000029 ORTHO05D000854 8.1e-09 65.9 96 43.8
Zm00001eb297830 Zea mays HOM05D000029 ORTHO05D445142 8.1e-09 65.9 98 43.9
ClCG01G025970 Citrullus lanatus HOM05D000029 ORTHO05D000854 1.4e-08 65.1 76 52.6
Hund20135 Selenicereus undatus HOM05D000029 ORTHO05D000854 1.4e-08 65.1 98 48.0
CAN.G185.28 Capsicum annuum HOM05D000029 ORTHO05D000854 3.1e-08 63.9 90 48.9
Sed0018716 Sechium edule HOM05D000029 ORTHO05D000854 3.1e-08 63.9 86 51.2
CANSAT35G0898 Cannabis sativa HOM05D000029 ORTHO05D000854 6.9e-08 62.8 79 51.9
Sed0024985 Sechium edule HOM05D000029 ORTHO05D000854 9.0e-08 62.4 93 48.4
Os05g0595800 Oryza sativa ssp. japonica HOM05D000029 ORTHO05D013250 2.6e-07 60.8 79 44.3
HPP92_008132 Vanilla planifolia HOM05D000029 ORTHO05D000854 6.4e-06 56.2 79 46.8
MBI06_g47102_MAGBIO Magnolia biondii HOM05D000029 ORTHO05D028700 8.4e-06 55.8 75 48.0


User provided reference genes

Program Settings