Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 8.2e-310 1066.2 543 100.0
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 4.8e-278 960.7 542 90.6
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 1.1e-277 959.5 543 89.9
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 1.5e-271 939.1 548 86.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 5.7e-271 937.2 543 87.1
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 4.5e-268 927.5 547 86.1
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 6.6e-267 923.7 547 85.9
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 4.0e-264 914.4 551 83.1
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 7.5e-263 910.2 542 84.3
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.2e-260 902.9 545 82.9
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 2.7e-260 901.7 544 83.5
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 5.0e-259 897.5 545 82.6
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.7e-251 872.5 547 79.0
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.1e-249 865.5 546 77.8
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 2.3e-248 862.1 546 77.5
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.0e-247 859.0 547 77.7
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 3.4e-247 858.2 546 77.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 7.5e-247 857.1 562 75.8
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 6.4e-246 854.0 545 77.1
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.9e-245 852.4 545 76.9
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 9.2e-245 850.1 551 76.8
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 2.3e-243 845.5 567 74.8
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 3.9e-243 844.7 574 73.2
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 8.6e-243 843.6 548 75.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.1e-242 843.2 556 74.1
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 7.3e-242 840.5 576 73.4
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 9.5e-242 840.1 592 72.1
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 9.5e-242 840.1 553 75.2
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.8e-240 835.9 547 75.1
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 3.1e-240 835.1 572 74.1
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 8.9e-240 833.6 549 75.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.5e-239 832.8 547 75.3
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.5e-239 832.8 547 75.7
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 3.4e-239 831.6 547 76.1
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 9.9e-239 830.1 551 75.1
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.3e-238 829.7 553 74.3
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.7e-238 829.3 562 74.7
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 4.9e-238 827.8 572 73.6
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 8.3e-238 827.0 549 73.6
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.4e-237 825.5 552 73.9
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 5.4e-237 824.3 547 74.6
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 7.1e-237 823.9 551 73.1
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.2e-236 823.2 559 74.2
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 2.7e-236 822.0 549 73.8
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 2.7e-236 822.0 513 77.8
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 7.8e-236 820.5 551 74.2
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 7.8e-236 820.5 549 75.4
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 1.7e-235 819.3 548 73.5
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.3e-235 818.9 548 74.6
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 2.3e-235 818.9 546 74.4
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 4.3e-234 814.7 556 73.6
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 1.2e-233 813.1 595 70.4
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.6e-233 811.6 550 73.3
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.4e-232 809.7 549 72.7
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.8e-232 809.3 557 74.1
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 9.9e-231 803.5 546 75.3
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.7e-230 802.7 553 71.6
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.9e-230 802.0 552 72.1
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 6.4e-230 800.8 488 78.3
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.9e-229 799.3 546 72.3
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 9.2e-229 797.0 552 71.6
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 7.8e-228 793.9 546 71.6
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.3e-227 793.1 594 69.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 3.0e-227 792.0 494 78.3
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 4.3e-226 788.1 479 78.7
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 5.6e-226 787.7 440 88.9
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 7.3e-226 787.3 556 70.7
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.3e-225 786.6 584 69.3
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 1.6e-225 786.2 573 70.7
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 3.6e-225 785.0 562 69.9
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.4e-224 783.1 546 73.6
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.6e-223 778.9 662 61.8
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 7.6e-223 777.3 462 81.4
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 2.2e-222 775.8 549 71.8
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 3.2e-221 771.9 512 73.0
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 4.2e-221 771.5 542 71.4
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 1.2e-220 770.0 606 66.0
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.4e-213 745.7 519 72.3
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 2.3e-211 739.2 539 70.9
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 5.1e-211 738.0 504 73.8
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 6.2e-209 731.1 595 64.0
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 8.1e-209 730.7 547 68.2
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 3.1e-208 728.8 561 67.6
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 3.5e-204 715.3 543 68.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 7.9e-204 714.1 542 72.5
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 7.9e-204 714.1 488 73.0
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.3e-201 706.8 511 67.3
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.8e-201 705.7 448 77.0
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 4.8e-201 704.9 484 72.9
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.6e-199 699.1 440 77.0
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.5e-199 698.4 585 63.6
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 5.5e-197 691.4 516 66.3
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 9.3e-197 690.6 483 70.2
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.8e-187 659.8 486 69.3
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 2.0e-186 656.4 485 63.7
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.7e-186 654.1 422 74.2
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.4e-184 650.2 553 62.9
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 5.3e-184 648.3 496 63.7
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 6.1e-180 634.8 569 60.5
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.0e-179 632.5 511 61.3
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 2.0e-178 629.8 423 72.6
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 4.5e-175 618.6 512 63.9
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 8.8e-171 604.4 469 65.5
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 9.8e-162 574.3 453 67.3
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.7e-161 573.5 340 84.7
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 1.3e-158 563.9 486 58.8
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 7.2e-157 558.1 485 59.6
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.6e-151 540.4 369 75.6
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 5.2e-147 525.4 319 80.6
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-140 504.2 319 76.8
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 5.4e-136 488.8 478 48.5
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 2.1e-132 476.9 293 81.2
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-124 450.7 256 90.6
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 3.1e-115 419.9 271 78.2
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 5.4e-112 409.1 440 52.0
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.6e-106 388.7 391 57.0
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.5e-98 364.4 228 80.3
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 2.1e-87 327.4 205 79.0
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 1.9e-80 304.3 210 69.0
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 4.6e-79 299.7 183 80.3
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 8.7e-78 295.4 210 67.1
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 8.2e-76 288.9 209 67.5
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.0e-73 282.0 472 37.3
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 5.0e-73 279.6 209 64.6
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-61 241.9 139 87.8
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.2e-60 235.7 137 75.2
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.4e-51 208.4 237 48.9
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 2.4e-51 207.6 248 50.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 7.2e-48 196.1 530 29.4
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-42 178.7 136 70.6
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-42 178.3 89 93.3
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.6e-42 178.3 89 93.3
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 1.2e-39 168.7 357 33.1
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 5.9e-34 149.8 146 55.5
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 1.8e-30 138.3 123 59.3
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 9.8e-29 132.5 111 64.0
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 2.7e-26 124.4 150 51.3
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 5.0e-25 120.2 69 82.6
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 2.3e-22 111.3 140 47.9
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 6.8e-22 109.8 63 84.1
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 3.7e-20 104.0 65 80.0
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 1.9e-19 101.7 64 75.0
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 5.4e-19 100.1 77 63.6
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 7.0e-19 99.8 121 47.1
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 7.0e-19 99.8 106 56.6
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 9.2e-19 99.4 52 88.5
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.6e-18 98.6 125 42.4
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 1.1e-16 92.4 54 79.6
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-15 89.0 90 60.0
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 2.6e-13 81.3 58 72.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 2.2e-12 78.2 61 65.6
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 6.0e-10 70.1 49 69.4
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 7.8e-10 69.7 46 69.6
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 2.1e-07 61.6 72 45.8
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 1.1e-06 59.3 43 65.1
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 1.4e-06 58.9 38 71.1
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 5.2e-06 57.0 132 34.1
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 6.8e-06 56.6 38 68.4


User provided reference genes

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