Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 8.0e-183 643.7 331 100.0
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 1.2e-181 639.8 331 99.1
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.3e-180 636.3 331 98.5
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 2.6e-173 612.1 327 95.7
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 4.1e-171 604.7 331 93.1
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 6.6e-169 597.4 331 92.1
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 1.5e-168 596.3 327 92.7
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 1.9e-168 595.9 331 91.8
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 2.5e-168 595.5 331 92.1
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 3.3e-168 595.1 331 91.8
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 2.8e-167 592.0 329 91.5
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 3.6e-167 591.7 331 91.5
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 3.6e-167 591.7 331 91.5
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 4.0e-166 588.2 337 90.5
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 3.2e-163 578.6 330 89.1
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.6e-162 576.2 328 88.7
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 5.9e-162 574.3 328 88.4
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 1.0e-161 573.5 327 89.6
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 1.3e-161 573.2 332 88.3
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 2.9e-161 572.0 328 88.1
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 2.9e-161 572.0 329 88.1
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 5.0e-161 571.2 332 88.0
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 6.6e-161 570.9 328 87.8
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 8.6e-161 570.5 332 87.7
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 3.3e-160 568.5 324 89.5
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 1.6e-159 566.2 330 87.3
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.8e-159 565.5 332 87.0
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 2.8e-159 565.5 330 87.6
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 6.2e-159 564.3 328 87.5
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.8e-158 562.8 324 89.5
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 1.8e-158 562.8 324 89.5
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 1.8e-158 562.8 327 87.5
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 3.1e-158 562.0 332 86.1
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 5.2e-158 561.2 331 90.6
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 8.9e-158 560.5 330 87.0
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 2.6e-157 558.9 324 88.3
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 5.8e-157 557.8 332 85.8
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.5e-157 557.4 330 86.7
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 9.8e-157 557.0 327 86.5
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.3e-156 556.6 332 84.3
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.3e-156 556.6 332 85.5
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.2e-156 555.8 332 84.6
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 6.4e-156 554.3 332 85.2
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.4e-155 553.1 327 85.3
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.9e-155 552.7 330 85.5
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 1.9e-155 552.7 330 85.5
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 4.1e-155 551.6 330 85.2
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.4e-155 551.2 327 85.3
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 7.0e-155 550.8 328 84.5
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 7.0e-155 550.8 332 85.2
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 7.0e-155 550.8 332 84.0
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.0e-154 549.3 332 84.3
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 4.6e-154 548.1 332 83.4
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 1.0e-153 547.0 326 85.3
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 1.0e-153 547.0 329 84.2
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.0e-153 547.0 332 82.5
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 1.3e-153 546.6 329 84.2
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.3e-153 546.6 332 83.1
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 1.7e-153 546.2 331 84.6
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 1.7e-153 546.2 332 82.5
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 1.7e-153 546.2 332 83.1
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 3.9e-153 545.0 329 83.9
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 3.9e-153 545.0 332 82.8
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 5.0e-153 544.7 333 83.2
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 5.0e-153 544.7 330 83.9
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 6.6e-153 544.3 331 82.8
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 8.6e-153 543.9 329 83.6
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.1e-152 543.5 386 75.6
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.9e-152 542.7 332 82.5
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 3.3e-152 542.0 327 86.2
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 3.3e-152 542.0 324 84.6
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 7.3e-152 540.8 329 83.0
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 7.3e-152 540.8 329 83.3
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 7.3e-152 540.8 329 83.0
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 7.3e-152 540.8 329 83.0
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 7.3e-152 540.8 329 83.0
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 7.3e-152 540.8 329 83.0
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 7.3e-152 540.8 328 83.2
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 1.2e-151 540.0 328 83.2
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 1.2e-151 540.0 329 84.2
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 83.5
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 1.6e-151 539.7 333 82.6
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 3.6e-151 538.5 362 79.6
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 8.1e-151 537.3 328 83.8
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 3.1e-150 535.4 331 82.2
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 3.1e-150 535.4 329 83.0
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 8.9e-150 533.9 359 76.3
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.5e-149 533.1 327 82.6
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.9e-147 526.2 331 81.0
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 2.4e-147 525.8 329 81.2
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 3.2e-147 525.4 331 80.7
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.1e-147 525.0 331 80.7
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 1.6e-146 523.1 331 79.2
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.6e-146 523.1 455 64.0
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 4.6e-146 521.5 331 78.9
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 7.8e-146 520.8 314 84.1
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 5.6e-144 514.6 303 85.8
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 3.6e-143 511.9 330 80.6
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 1.8e-142 509.6 324 79.9
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.2e-141 506.9 327 78.6
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 2.2e-140 502.7 331 78.9
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 3.2e-139 498.8 332 79.5
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.0e-137 493.8 328 77.1
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 1.1e-134 483.8 329 73.3
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 9.9e-133 477.2 331 76.4
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 3.8e-132 475.3 329 73.6
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 4.2e-131 471.9 377 68.2
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 3.9e-129 465.3 325 71.7
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 5.6e-128 461.5 330 74.2
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 2.0e-125 453.0 278 82.0
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 1.4e-123 446.8 329 72.3
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 3.2e-123 445.7 234 97.0
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 6.6e-121 438.0 332 71.4
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 4.3e-112 408.7 323 68.1
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 5.8e-109 398.3 325 60.3
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.0e-108 397.5 317 62.8
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 6.0e-106 388.3 233 82.8
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 1.8e-105 386.7 330 60.9
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 4.1e-102 375.6 274 71.2
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 3.8e-100 369.0 321 62.3
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 2.0e-93 346.7 197 88.8
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 3.9e-89 332.4 338 60.7
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 1.5e-88 330.5 229 74.7
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 2.5e-88 329.7 335 59.4
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 2.8e-87 326.2 239 66.5
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 4.1e-86 322.4 220 78.2
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 2.2e-84 316.6 220 76.4
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 8.8e-81 304.7 220 75.5
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 1.3e-79 300.8 167 88.6
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 6.1e-74 282.0 339 43.7
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 5.9e-69 265.4 165 83.0
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 1.6e-66 257.3 329 51.4
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 2.7e-66 256.5 165 78.2
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 8.8e-65 251.5 268 54.9
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 1.6e-58 230.7 135 85.2
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 4.5e-53 212.6 130 83.8
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 2.1e-42 177.2 162 62.3
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 8.9e-41 171.8 195 49.2
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.4e-40 169.9 103 81.6
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 1.6e-37 161.0 103 79.6
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 2.7e-37 160.2 205 49.3
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 1.3e-36 157.9 87 87.4
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 2.1e-34 150.6 90 86.7
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 8.9e-33 145.2 92 81.5
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 2.0e-32 144.1 74 97.3
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 7.5e-32 142.1 80 87.5
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.7e-31 141.0 88 78.4
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 3.2e-30 136.7 69 91.3
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 1.5e-27 127.9 72 84.7
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 1.2e-26 124.8 77 83.1
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 4.0e-25 119.8 72 84.7
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 8.9e-25 118.6 75 76.0
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 6.4e-23 112.5 69 81.2
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-17 95.1 67 74.6
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 6.4e-15 85.9 65 70.8
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 3.0e-12 77.0 85 55.3
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 4.5e-08 63.2 34 85.3
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 5.8e-08 62.8 33 87.9


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