Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g045350 Medicago truncatula HOM05D002671 ORTHO05D002985 1.4e-69 266.2 137 100.0
Glyma.05G173600 Glycine max HOM05D002671 ORTHO05D002985 6.3e-17 91.3 107 57.9
Psat7g058840 Pisum sativum HOM05D002671 ORTHO05D002985 1.1e-16 90.5 91 63.7
arahy.Tifrunner.gnm1.ann1.48P4SG Arachis hypogaea HOM05D002671 ORTHO05D002985 2.4e-16 89.4 91 62.6
Medtr8g089685 Medicago truncatula HOM05D002671 ORTHO05D002985 2.4e-16 89.4 91 63.7
Medtr2g073180 Medicago truncatula HOM05D011084 ORTHO05D262324 3.1e-16 89.0 66 72.7
TPR.G6192 Trifolium pratense HOM05D002671 ORTHO05D002985 5.3e-16 88.2 91 62.6
Ca_17787_v3 Cicer arietinum L. HOM05D002671 ORTHO05D002985 7.0e-16 87.8 91 61.5
Glyma.08G130900 Glycine max HOM05D002671 ORTHO05D002985 7.0e-16 87.8 91 61.5
arahy.Tifrunner.gnm1.ann1.91SUEF Arachis hypogaea HOM05D002671 ORTHO05D002985 4.5e-15 85.1 91 61.5
Lalb_Chr07g0185491 Lupinus albus HOM05D002671 ORTHO05D002985 4.5e-15 85.1 91 59.3
MD13G1104300 Malus domestica HOM05D002671 ORTHO05D002985 5.9e-15 84.7 91 58.2
Prupe.1G242200 Prunus persica HOM05D002671 ORTHO05D002985 7.7e-15 84.3 91 58.2
Lalb_Chr12g0204071 Lupinus albus HOM05D002671 ORTHO05D002985 1.0e-14 84.0 91 58.2
Phvul.002G258700 Phaseolus vulgaris HOM05D002671 ORTHO05D002985 1.0e-14 84.0 91 59.3
VMungo0251G3376 Vigna mungo HOM05D002671 ORTHO05D002985 2.2e-14 82.8 91 59.3
Lj4g0010011 Lotus japonicus HOM05D002671 ORTHO05D002985 7.2e-13 77.8 94 57.4
Manes.12G020500 Manihot esculenta HOM05D002671 ORTHO05D002985 7.2e-13 77.8 91 53.8
Manes.13G021100 Manihot esculenta HOM05D002671 ORTHO05D002985 2.7e-12 75.9 91 53.8
CiPaw.05G177900 Carya illinoinensis HOM05D002671 ORTHO05D002985 3.6e-12 75.5 91 52.7
Rhsim12G0108100 Rhododendron simsii HOM05D002671 ORTHO05D002985 3.6e-12 75.5 91 54.9
TAR622G0609 Trochodendron aralioides HOM05D002671 ORTHO05D002985 8.0e-12 74.3 91 52.7
Ciclev10030886m.g Citrus clementina HOM05D002671 ORTHO05D002985 1.8e-11 73.2 91 51.6
Dinv11046 Davidia involucrata HOM05D002671 ORTHO05D002985 1.8e-11 73.2 91 51.6
Dinv15205 Davidia involucrata HOM05D002671 ORTHO05D002985 1.8e-11 73.2 91 51.6
vmacro16176 Vaccinium macrocarpon HOM05D002671 ORTHO05D002985 3.0e-11 72.4 90 52.2
CANSAT01G2908 Cannabis sativa HOM05D002671 ORTHO05D002985 5.2e-11 71.6 91 51.6
QL03p056617 Quercus lobata HOM05D002671 ORTHO05D002985 5.2e-11 71.6 90 52.2
Actinidia37449 Actinidia chinensis HOM05D002671 ORTHO05D002985 1.2e-10 70.5 91 50.5
Potri.008G183800 Populus trichocarpa HOM05D002671 ORTHO05D002985 1.2e-10 70.5 91 51.6
COL.COLO4_23496 Corchorus olitorius HOM05D002671 ORTHO05D002985 2.6e-10 69.3 91 49.5
Sabra08G0139900 Salix brachista HOM05D002671 ORTHO05D002985 2.6e-10 69.3 91 50.5
Sabra10G0019900 Salix brachista HOM05D002671 ORTHO05D002985 4.4e-10 68.6 91 50.5
Lj6C815T10 Lonicera japonica HOM05D002671 ORTHO05D002985 5.7e-10 68.2 101 47.5
TWI18G0350 Tripterygium wilfordii HOM05D002671 ORTHO05D002985 5.7e-10 68.2 91 50.5
Nn3g16663 Nelumbo nucifera HOM05D002671 ORTHO05D002985 9.8e-10 67.4 90 47.8
CSS0043891 Camellia sinensis var. sinensis HOM05D002671 ORTHO05D002985 1.3e-09 67.0 90 51.1
Potri.008G184600 Populus trichocarpa HOM05D002671 ORTHO05D002985 1.3e-09 67.0 91 49.5
Nn4g22554 Nelumbo nucifera HOM05D002671 ORTHO05D002985 1.7e-09 66.6 90 48.9
AUR62005509 Chenopodium quinoa HOM05D002671 ORTHO05D002985 3.7e-09 65.5 91 49.5
AUR62024233 Chenopodium quinoa HOM05D002671 ORTHO05D002985 3.7e-09 65.5 91 49.5
PGR119G2294 Punica granatum HOM05D002671 ORTHO05D002985 3.7e-09 65.5 91 50.5
DCAR_031168 Daucus carota HOM05D002671 ORTHO05D002985 4.8e-09 65.1 91 48.4
EL10Ac6g13886 Beta vulgaris HOM05D002671 ORTHO05D002985 8.3e-09 64.3 91 47.3
Hund25403 Selenicereus undatus HOM05D002671 ORTHO05D002985 2.4e-08 62.8 90 48.9
Ah.03g133430 Amaranthus hybridus HOM05D002671 ORTHO05D002985 5.4e-08 61.6 91 47.3
MBI06_g16051_MAGBIO Magnolia biondii HOM05D002671 ORTHO05D002985 9.1e-08 60.8 91 45.1
MSTRG.554 Avicennia marina HOM05D002671 ORTHO05D002985 1.2e-07 60.5 91 46.2
Duzib251G0500 Durio zibethinus HOM05D002671 ORTHO05D002985 2.0e-07 59.7 91 45.1
Cfa009242 Carpinus fangiana HOM05D002671 ORTHO05D002985 3.5e-07 58.9 90 45.6
Oeu057550.2 Olea europaea HOM05D002671 ORTHO05D002985 3.5e-07 58.9 91 45.1
SGA_v2.0_scaffold100G29580 Striga asiatica HOM05D002671 ORTHO05D002985 7.7e-07 57.8 91 45.1
Thhalv10006977m.g Eutrema salsugineum HOM05D002671 ORTHO05D002985 1.7e-06 56.6 101 40.6
Potri.010G049400 Populus trichocarpa HOM05D002671 ORTHO05D002985 1.7e-06 56.6 82 48.8
AL1G40370 Arabidopsis lyrata HOM05D002671 ORTHO05D002985 2.3e-06 56.2 101 39.6
ATR0199G036 Amborella trichopoda HOM05D002671 ORTHO05D002985 2.9e-06 55.8 91 44.0
BcaB03g12054 Brassica carinata HOM05D002671 ORTHO05D002985 2.9e-06 55.8 113 37.2
A09p38880 Brassica napus HOM05D002671 ORTHO05D002985 3.8e-06 55.5 94 40.4
C05p25600 Brassica napus HOM05D002671 ORTHO05D002985 3.8e-06 55.5 94 40.4
BraA09t39395Z Brassica rapa HOM05D002671 ORTHO05D002985 3.8e-06 55.5 94 40.4
Migut.K00624 Erythranthe guttata HOM05D002671 ORTHO05D002985 3.8e-06 55.5 91 45.1
AT1G24560 Arabidopsis thaliana HOM05D002671 ORTHO05D002985 5.0e-06 55.1 101 39.6
BcaC05g26706 Brassica carinata HOM05D002671 ORTHO05D002985 5.0e-06 55.1 101 40.6
BolC5t31288H Brassica oleracea HOM05D002671 ORTHO05D002985 6.6e-06 54.7 94 40.4
TWI75G0863 Tripterygium wilfordii HOM05D002671 ORTHO05D002985 6.6e-06 54.7 91 44.0
CSS0022437 Camellia sinensis var. sinensis HOM05D002671 ORTHO05D002985 8.6e-06 54.3 91 44.0
ClCG11G000520 Citrullus lanatus HOM05D002671 ORTHO05D002985 8.6e-06 54.3 104 42.3


User provided reference genes

Program Settings