Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g044650 Medicago truncatula HOM05D009351 ORTHO05D011822 2.8e-125 451.8 211 100.0
Medtr3g026170 Medicago truncatula HOM05D009351 ORTHO05D011822 5.5e-36 155.2 115 62.6
Medtr1g058030 Medicago truncatula HOM05D009351 ORTHO05D011822 1.0e-29 134.4 104 62.5
Medtr7g451490 Medicago truncatula HOM05D009351 ORTHO05D011822 5.0e-29 132.1 91 69.2
Medtr7g007530 Medicago truncatula HOM05D009351 ORTHO05D011822 5.1e-26 122.1 109 56.0
Medtr4g051040 Medicago truncatula HOM05D009351 ORTHO05D011822 7.0e-23 111.7 113 48.7
Medtr3g465360 Medicago truncatula HOM05D009351 ORTHO05D011822 1.5e-22 110.5 106 49.1
Medtr8g470880 Medicago truncatula HOM05D000003 ORTHO05D000006 2.0e-22 110.2 192 32.3
Medtr7g031765 Medicago truncatula HOM05D009351 ORTHO05D011822 6.5e-21 105.1 194 32.0
Medtr2g046980 Medicago truncatula HOM05D009351 ORTHO05D011822 6.7e-18 95.1 77 57.1
Medtr0070s0030 Medicago truncatula HOM05D015419 ORTHO05D011822 2.0e-17 93.6 194 30.9
Medtr0553s0050 Medicago truncatula HOM05D009351 ORTHO05D011822 2.6e-17 93.2 64 62.5
RcHm_v2.0_Chr7g0185631 Rosa chinensis HOM05D000155 ORTHO05D000022 3.7e-16 89.4 189 32.8
Medtr6g023925 Medicago truncatula HOM05D009351 ORTHO05D011822 4.8e-16 89.0 59 71.2
RcHm_v2.0_Chr3g0453641 Rosa chinensis HOM05D000003 ORTHO05D000004 8.2e-16 88.2 189 32.3
RcHm_v2.0_Chr2g0160431 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-15 87.8 189 32.3
MD02G1050700 Malus domestica HOM05D000155 ORTHO05D000022 3.1e-15 86.3 178 32.6
Medtr7g071850 Medicago truncatula HOM05D009351 ORTHO05D011822 3.1e-15 86.3 86 46.5
MD07G1021300 Malus domestica HOM05D000155 ORTHO05D000022 7.0e-15 85.1 168 33.3
Medtr1g074290 Medicago truncatula HOM05D000124 ORTHO05D000056 9.1e-15 84.7 57 68.4
MD13G1019000 Malus domestica HOM05D000155 ORTHO05D000022 1.2e-14 84.3 178 30.9
Atru.chr2.2552 Acer truncatum HOM05D005989 ORTHO05D000022 5.9e-14 82.0 200 27.0
RcHm_v2.0_Chr3g0465511 Rosa chinensis HOM05D000155 ORTHO05D000022 5.9e-14 82.0 187 31.6
Medtr6g075360 Medicago truncatula HOM05D009351 ORTHO05D011822 2.9e-13 79.7 64 59.4
Medtr2g041060 Medicago truncatula HOM05D009299 ORTHO05D000022 1.1e-12 77.8 198 28.8
Medtr3g052720 Medicago truncatula HOM05D000001 ORTHO05D000003 1.5e-12 77.4 151 32.5
RcHm_v2.0_Chr4g0393351 Rosa chinensis HOM05D000155 ORTHO05D000022 4.2e-12 75.9 167 31.1
Medtr4g031410 Medicago truncatula HOM05D001538 ORTHO05D000007 7.2e-12 75.1 51 58.8
Medtr4g031755 Medicago truncatula HOM05D001538 ORTHO05D000007 7.2e-12 75.1 51 58.8
Lalb_Chr21g0306271 Lupinus albus HOM05D005989 ORTHO05D000022 1.6e-11 73.9 204 27.5
Atru.chr1.1636 Acer truncatum HOM05D005989 ORTHO05D000022 3.6e-11 72.8 190 26.8
RcHm_v2.0_Chr3g0462451 Rosa chinensis HOM05D005989 ORTHO05D000022 3.6e-11 72.8 174 31.0
Medtr5g078230 Medicago truncatula HOM05D009351 ORTHO05D011822 1.0e-10 71.2 81 40.7
Atru.chr5.427 Acer truncatum HOM05D000155 ORTHO05D000022 1.8e-10 70.5 168 30.4
FvH4_6g09211 Fragaria vesca HOM05D000003 ORTHO05D000651 1.8e-10 70.5 164 31.7
RcHm_v2.0_Chr6g0263381 Rosa chinensis HOM05D000155 ORTHO05D000022 1.8e-10 70.5 137 33.6
TPR.G34502 Trifolium pratense HOM05D029382 ORTHO05D022921 2.3e-10 70.1 129 31.8
RcHm_v2.0_Chr6g0251621 Rosa chinensis HOM05D000155 ORTHO05D000022 3.0e-10 69.7 143 32.2
Atru.chr2.2454 Acer truncatum HOM05D005989 ORTHO05D000022 4.0e-10 69.3 165 29.7
Medtr5g059590 Medicago truncatula HOM05D009351 ORTHO05D011822 5.2e-10 68.9 49 59.2
RcHm_v2.0_Chr2g0133661 Rosa chinensis HOM05D000155 ORTHO05D000022 5.2e-10 68.9 222 26.1
Medtr4g031795 Medicago truncatula HOM05D015419 ORTHO05D011822 6.8e-10 68.6 66 42.4
TPR.G18660 Trifolium pratense HOM05D005989 ORTHO05D000022 6.8e-10 68.6 151 28.5
RcHm_v2.0_Chr2g0140031 Rosa chinensis HOM05D000003 ORTHO05D000004 8.8e-10 68.2 175 28.0
Medtr3g073030 Medicago truncatula HOM05D009351 ORTHO05D011822 1.2e-09 67.8 56 53.6
Prupe.1G509200 Prunus persica HOM05D000003 ORTHO05D000022 1.5e-09 67.4 167 28.7
arahy.Tifrunner.gnm1.ann1.I6PHI5 Arachis hypogaea HOM05D000003 ORTHO05D000022 2.0e-09 67.0 151 27.8
RcHm_v2.0_Chr4g0409421 Rosa chinensis HOM05D005989 ORTHO05D000022 2.0e-09 67.0 188 30.9
VMungo0540G1625 Vigna mungo HOM05D000062 ORTHO05D000043 2.0e-09 67.0 150 30.7
Medtr6g444950 Medicago truncatula HOM05D009351 ORTHO05D011822 2.6e-09 66.6 57 49.1
Actinidia31778 Actinidia chinensis HOM05D000155 ORTHO05D000022 3.4e-09 66.2 168 28.6
Atru.chr8.1561 Acer truncatum HOM05D000003 ORTHO05D000022 4.4e-09 65.9 136 29.4
Thecc.03G325600 Theobroma cacao HOM05D000003 ORTHO05D000006 4.4e-09 65.9 166 27.1
RcHm_v2.0_Chr6g0264461 Rosa chinensis HOM05D005989 ORTHO05D000022 5.7e-09 65.5 174 29.3
Sp7g19540 Schrenkiella parvula HOM05D000155 ORTHO05D000022 5.7e-09 65.5 167 27.5
RcHm_v2.0_Chr6g0259301 Rosa chinensis HOM05D000155 ORTHO05D000022 7.5e-09 65.1 174 27.6
BcaC09g51229 Brassica carinata HOM05D000155 ORTHO05D000022 1.3e-08 64.3 167 28.7
C01p15320 Brassica napus HOM05D000155 ORTHO05D000022 1.3e-08 64.3 167 28.7
BolC1t01486H Brassica oleracea HOM05D000155 ORTHO05D000022 1.3e-08 64.3 167 28.7
BraA01t01216Z Brassica rapa HOM05D000155 ORTHO05D000022 1.3e-08 64.3 167 28.1
Medtr3g448510 Medicago truncatula HOM05D009351 ORTHO05D011822 2.2e-08 63.5 48 52.1
RcHm_v2.0_Chr1g0352021 Rosa chinensis HOM05D005989 ORTHO05D000022 2.2e-08 63.5 174 29.9
A01p12730 Brassica napus HOM05D000155 ORTHO05D000022 2.8e-08 63.2 167 27.5
Lj4g0025065 Lotus japonicus HOM05D000155 ORTHO05D000022 3.7e-08 62.8 78 37.2
TPR.G6692 Trifolium pratense HOM05D005989 ORTHO05D000022 3.7e-08 62.8 61 47.5
CSS0017504 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 4.8e-08 62.4 131 33.6
TPR.G13740 Trifolium pratense HOM05D005989 ORTHO05D000022 4.8e-08 62.4 139 31.7
Atru.chr7.120 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-08 62.0 155 26.5
VMungo0540G0582 Vigna mungo HOM05D000774 ORTHO05D000602 6.3e-08 62.0 171 25.1
Atru.chr11.94 Acer truncatum HOM05D005989 ORTHO05D000022 8.3e-08 61.6 104 34.6
arahy.Tifrunner.gnm1.ann1.0Q53RJ Arachis hypogaea HOM05D000155 ORTHO05D000022 8.3e-08 61.6 115 33.9
Atru.chr1.1759 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-07 61.2 134 29.9
Lj6g0023576 Lotus japonicus HOM05D000003 ORTHO05D000022 1.1e-07 61.2 146 29.5
Thecc.02G366600 Theobroma cacao HOM05D000003 ORTHO05D000006 1.4e-07 60.8 136 27.9
TWI63G0844 Tripterygium wilfordii HOM05D000013 ORTHO05D000011 1.4e-07 60.8 179 25.7
Lj1P688T36 Lonicera japonica HOM05D000155 ORTHO05D000022 1.8e-07 60.5 156 28.2
Medtr6g024015 Medicago truncatula HOM05D009351 ORTHO05D011822 1.8e-07 60.5 40 62.5
Lj1P685T53 Lonicera japonica HOM05D000155 ORTHO05D000022 2.4e-07 60.1 156 28.2
Lj1P687T17 Lonicera japonica HOM05D000155 ORTHO05D000022 2.4e-07 60.1 158 27.8
TPR.G29610 Trifolium pratense HOM05D000014 ORTHO05D022921 2.4e-07 60.1 96 32.3
arahy.Tifrunner.gnm1.ann1.3ZGA1D Arachis hypogaea HOM05D000155 ORTHO05D000022 3.1e-07 59.7 195 28.2
FvH4_5g38601 Fragaria vesca HOM05D000003 ORTHO05D000651 3.1e-07 59.7 80 42.5
RcHm_v2.0_Chr2g0127141 Rosa chinensis HOM05D000003 ORTHO05D000022 4.1e-07 59.3 168 29.2
PGSC0003DMG400029909 Solanum tuberosum HOM05D000024 ORTHO05D000022 4.1e-07 59.3 86 36.0
arahy.Tifrunner.gnm1.ann1.WYFF13 Arachis hypogaea HOM05D000155 ORTHO05D000022 5.4e-07 58.9 154 29.9
Atru.chr4.136 Acer truncatum HOM05D000003 ORTHO05D000022 7.0e-07 58.5 140 26.4
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 9.1e-07 58.2 123 30.1
PGSC0003DMG400000971 Solanum tuberosum HOM05D000155 ORTHO05D000022 1.6e-06 57.4 125 29.6
TPR.G24766 Trifolium pratense HOM05D000096 ORTHO05D000045 1.6e-06 57.4 60 51.7
TPR.G35839 Trifolium pratense HOM05D002539 ORTHO05D002876 1.6e-06 57.4 112 31.2
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 1.6e-06 57.4 156 31.4
AL7G32660 Arabidopsis lyrata HOM05D000155 ORTHO05D000022 2.0e-06 57.0 158 29.1
CSS0029354 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-06 57.0 150 28.7
Medtr1g062850 Medicago truncatula HOM05D025657 ORTHO05D030193 2.0e-06 57.0 47 51.1
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.7e-06 56.6 149 26.8
Lj4g0002379 Lotus japonicus HOM05D000003 ORTHO05D000022 2.7e-06 56.6 160 25.0
Nitab4.5_0001141g0030 Nicotiana tabacum HOM05D000155 ORTHO05D000022 2.7e-06 56.6 117 32.5
TPR.G36653 Trifolium pratense HOM05D000003 ORTHO05D000006 2.7e-06 56.6 60 43.3
FvH4_6g51131 Fragaria vesca HOM05D000155 ORTHO05D000022 3.5e-06 56.2 79 38.0
COL.COLO4_19293 Corchorus olitorius HOM05D000155 ORTHO05D000022 4.5e-06 55.8 160 25.6
Actinidia24692 Actinidia chinensis HOM05D000155 ORTHO05D000022 5.9e-06 55.5 143 29.4
CSS0009143 Camellia sinensis var. sinensis HOM05D000155 ORTHO05D000022 5.9e-06 55.5 160 29.4
Cc00_g03760 Coffea canephora HOM05D000155 ORTHO05D000022 5.9e-06 55.5 126 28.6
FvH4_4g27942 Fragaria vesca HOM05D000003 ORTHO05D000022 5.9e-06 55.5 137 26.3
PSO017G7175 Papaver somniferum HOM05D000003 ORTHO05D000004 5.9e-06 55.5 117 29.9
RcHm_v2.0_Chr7g0225251 Rosa chinensis HOM05D000003 ORTHO05D000022 7.7e-06 55.1 171 25.7


User provided reference genes

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