Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 2.2e-67 258.8 132 100.0
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 3.3e-55 218.4 130 85.4
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 4.8e-54 214.5 129 82.2
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 1.2e-52 209.9 127 81.1
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 5.8e-52 207.6 129 78.3
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 2.2e-51 205.7 127 79.5
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 2.2e-51 205.7 127 79.5
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 9.3e-50 200.3 123 80.5
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.2e-49 199.9 129 79.1
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 2.7e-49 198.7 122 80.3
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 3.5e-49 198.4 120 80.8
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.8e-48 196.1 132 75.0
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 2.3e-48 195.7 132 76.5
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 2.3e-48 195.7 127 75.6
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 2.3e-48 195.7 122 79.5
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.0e-48 195.3 130 75.4
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 6.7e-48 194.1 114 81.6
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 8.7e-48 193.7 130 75.4
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.1e-47 193.4 129 76.0
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.9e-47 192.6 126 77.0
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 2.5e-47 192.2 116 81.9
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 3.3e-47 191.8 117 79.5
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 4.3e-47 191.4 120 77.5
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 9.6e-47 190.3 120 75.8
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 9.6e-47 190.3 116 81.0
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 9.6e-47 190.3 126 75.4
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 9.6e-47 190.3 118 78.0
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.3e-46 189.9 115 79.1
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 1.6e-46 189.5 122 77.0
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.6e-46 189.5 123 74.8
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 1.6e-46 189.5 123 74.8
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 1.6e-46 189.5 123 74.8
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 4.8e-46 188.0 116 79.3
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 6.2e-46 187.6 126 74.6
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.4e-45 186.4 136 72.8
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.8e-45 186.0 120 75.0
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 2.4e-45 185.7 122 77.0
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 2.4e-45 185.7 122 71.3
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 2.4e-45 185.7 122 74.6
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 6.9e-45 184.1 115 75.7
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 6.9e-45 184.1 122 73.0
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 6.9e-45 184.1 122 73.0
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 1.2e-44 183.3 120 74.2
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.5e-44 183.0 128 74.2
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 3.4e-44 181.8 120 72.5
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 3.4e-44 181.8 116 76.7
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.5e-44 181.4 122 73.8
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 5.8e-44 181.0 119 71.4
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.3e-43 179.9 115 73.9
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.7e-43 179.5 140 70.0
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.7e-43 179.5 120 76.7
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 2.2e-43 179.1 118 73.7
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 3.8e-43 178.3 113 78.8
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 3.8e-43 178.3 121 76.0
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 3.8e-43 178.3 113 77.9
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 3.8e-43 178.3 122 73.8
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 1.1e-42 176.8 120 73.3
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 1.4e-42 176.4 120 75.8
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.4e-42 176.4 135 66.7
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.4e-42 176.4 135 66.7
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.9e-42 176.0 132 65.9
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.5e-42 175.6 120 72.5
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.5e-42 175.6 120 70.8
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 3.2e-42 175.3 120 73.3
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 4.2e-42 174.9 114 76.3
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 9.3e-42 173.7 116 73.3
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 1.2e-41 173.3 116 70.7
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.6e-41 172.9 145 61.4
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.6e-41 172.9 145 61.4
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 2.7e-41 172.2 116 71.6
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 6.0e-41 171.0 127 70.1
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 7.9e-41 170.6 126 70.6
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.0e-40 170.2 113 71.7
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 1.0e-40 170.2 120 70.0
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 3.0e-40 168.7 131 64.9
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 8.7e-40 167.2 118 66.9
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.1e-39 166.8 120 69.2
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 4.3e-39 164.9 130 66.9
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.2e-38 162.5 118 66.1
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 3.7e-38 161.8 117 66.7
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 4.8e-38 161.4 118 65.3
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 8.2e-38 160.6 136 64.7
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 1.1e-37 160.2 118 64.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 2.4e-37 159.1 117 65.8
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 4.1e-37 158.3 121 68.6
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.2e-36 156.8 154 55.2
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.5e-36 156.4 144 57.6
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.0e-36 156.0 135 60.0
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 7.6e-36 154.1 118 63.6
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.7e-35 152.9 122 66.4
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.7e-35 152.9 138 57.2
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.2e-35 152.5 175 49.1
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-34 149.8 115 67.8
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 4.2e-34 148.3 107 68.2
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.2e-33 146.7 115 67.0
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.6e-33 146.4 113 68.1
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 2.7e-33 145.6 128 65.6
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 2.7e-33 145.6 144 54.9
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 3.6e-33 145.2 128 64.1
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 3.0e-32 142.1 126 57.9
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 8.7e-32 140.6 112 67.0
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.5e-31 139.0 106 60.4
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 3.3e-31 138.7 112 66.1
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 7.4e-31 137.5 90 71.1
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 7.4e-31 137.5 129 55.8
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.3e-30 136.7 100 70.0
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 1.7e-30 136.3 119 60.5
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 3.7e-30 135.2 129 55.0
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 3.7e-30 135.2 128 54.7
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 4.8e-30 134.8 108 62.0
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 8.2e-30 134.0 88 69.3
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 8.2e-30 134.0 129 55.0
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 6.9e-29 131.0 159 49.1
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 7.7e-28 127.5 111 56.8
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.3e-27 126.7 85 68.2
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 5.5e-26 121.3 105 55.2
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.6e-25 118.6 175 40.6
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 4.7e-25 118.2 118 53.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 6.1e-25 117.9 84 66.7
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 3.0e-24 115.5 70 74.3
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 5.7e-23 111.3 103 57.3
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 2.8e-22 109.0 70 71.4
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.7e-22 108.6 69 72.5
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 3.4e-20 102.1 83 63.9
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 4.4e-15 85.1 83 60.2
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 2.8e-14 82.4 60 61.7
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 2.4e-13 79.3 49 77.6
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.2e-12 77.0 65 53.8
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.6e-09 66.6 66 53.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.2e-07 60.5 48 56.2
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-07 58.5 50 60.0


User provided reference genes

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