Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g043640 Medicago truncatula HOM05D006591 ORTHO05D007861 2.6e-45 186.4 248 100.0
Psat2g128080 Pisum sativum HOM05D006591 ORTHO05D007861 1.3e-31 141.0 124 76.6
TPR.G2283 Trifolium pratense HOM05D006591 ORTHO05D007861 7.6e-29 131.7 237 82.3
Glyma.01G055500 Glycine max HOM05D006591 ORTHO05D007861 1.7e-28 130.6 123 77.2
TPR.G24426 Trifolium pratense HOM05D006591 ORTHO05D007861 3.8e-28 129.4 237 92.8
Glyma.02G113900 Glycine max HOM05D006591 ORTHO05D007861 4.9e-28 129.0 121 66.9
Phvul.002G068900 Phaseolus vulgaris HOM05D006591 ORTHO05D007861 6.5e-28 128.6 118 60.2
VMungo1215G0675 Vigna mungo HOM05D006591 ORTHO05D007861 1.4e-27 127.5 116 77.6
Ca_04911_v3 Cicer arietinum L. HOM05D006591 ORTHO05D007861 2.1e-26 123.6 123 82.9
Lalb_Chr10g0098581 Lupinus albus HOM05D006591 ORTHO05D007861 2.1e-26 123.6 124 76.6
Lj2g0025600 Lotus japonicus HOM05D006591 ORTHO05D007861 1.3e-25 120.9 125 72.0
Solyc05g012590.4 Solanum lycopersicum HOM05D006591 ORTHO05D007861 1.1e-22 111.3 118 54.2
Sopen05g007420 Solanum pennellii HOM05D006591 ORTHO05D007861 1.4e-22 110.9 118 66.1
Ciclev10032613m.g Citrus clementina HOM05D006591 ORTHO05D007861 4.1e-22 109.4 122 66.4
arahy.Tifrunner.gnm1.ann1.09DLU7 Arachis hypogaea HOM05D006591 ORTHO05D007861 1.5e-21 107.5 113 72.6
Atru.chr11.1685 Acer truncatum HOM05D006591 ORTHO05D007861 2.0e-21 107.1 124 67.7
PGSC0003DMG400028326 Solanum tuberosum HOM05D006591 ORTHO05D007861 1.0e-20 104.8 118 65.3
TWI75G0359 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 1.3e-20 104.4 122 66.4
Cfa008903 Carpinus fangiana HOM05D006591 ORTHO05D007861 1.7e-20 104.0 122 64.8
Peaxi162Scf00314g00027 Petunia axillaris HOM05D006591 ORTHO05D007861 1.1e-19 101.3 109 63.3
CiPaw.06G090100 Carya illinoinensis HOM05D006591 ORTHO05D007861 2.5e-19 100.1 122 68.0
CsaV3_5G025480 Cucumis sativus L. HOM05D006591 ORTHO05D007861 4.2e-19 99.4 120 68.3
TWI79G1606 Tripterygium wilfordii HOM05D006591 ORTHO05D007861 4.2e-19 99.4 113 62.8
MELO3C002930.2 Cucumis melo HOM05D006591 ORTHO05D007861 7.2e-19 98.6 120 48.3
Dinv16706 Davidia involucrata HOM05D006591 ORTHO05D007861 1.6e-18 97.4 125 64.0
MD13G1065800 Malus domestica HOM05D006591 ORTHO05D007861 1.6e-18 97.4 112 69.6
arahy.Tifrunner.gnm1.ann1.74ATFD Arachis hypogaea HOM05D006591 ORTHO05D007861 4.6e-18 95.9 113 52.2
GSVIVG01012181001 Vitis vinifera HOM05D006591 ORTHO05D007861 1.0e-17 94.7 118 58.5
QL03p070967 Quercus lobata HOM05D006591 ORTHO05D007861 1.4e-17 94.4 120 47.5
CSS0032544 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.8e-17 94.0 127 48.8
Nn4g23331 Nelumbo nucifera HOM05D006591 ORTHO05D007861 3.0e-17 93.2 123 60.2
Cpa.g.sc1.95 Carica papaya HOM05D006591 ORTHO05D007861 3.9e-17 92.8 122 45.9
COL.COLO4_05797 Corchorus olitorius HOM05D006591 ORTHO05D007861 3.9e-17 92.8 110 50.9
MD16G1064400 Malus domestica HOM05D006591 ORTHO05D007861 3.9e-17 92.8 108 70.4
CANSAT64G0984 Cannabis sativa HOM05D006591 ORTHO05D007861 1.1e-16 91.3 121 59.5
Carub.0005s0239 Capsella rubella HOM05D006591 ORTHO05D007861 1.5e-16 90.9 116 65.5
CAN.G1340.9 Capsicum annuum HOM05D006591 ORTHO05D007861 2.5e-16 90.1 111 62.2
Thecc.02G335700 Theobroma cacao HOM05D006591 ORTHO05D007861 2.5e-16 90.1 120 68.3
Haze_11932 Corylus avellana HOM05D006591 ORTHO05D007861 3.3e-16 89.7 145 41.4
DCAR_027452 Daucus carota HOM05D006591 ORTHO05D007861 5.7e-16 89.0 120 57.5
Prupe.1G282400 Prunus persica HOM05D006591 ORTHO05D007861 5.7e-16 89.0 122 63.1
Sp2g14340 Schrenkiella parvula HOM05D006591 ORTHO05D007861 5.7e-16 89.0 116 64.7
Gorai.009G326200 Gossypium raimondii HOM05D006591 ORTHO05D007861 7.4e-16 88.6 107 51.4
Gohir.A05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 9.7e-16 88.2 118 47.5
Hund25197 Selenicereus undatus HOM05D006591 ORTHO05D007861 9.7e-16 88.2 81 61.7
Gohir.D05G306200 Gossypium hirsutum HOM05D006591 ORTHO05D007861 1.3e-15 87.8 118 47.5
BraA09t38037Z Brassica rapa HOM05D006591 ORTHO05D007861 1.7e-15 87.4 116 61.2
AL5G13180 Arabidopsis lyrata HOM05D006591 ORTHO05D007861 2.2e-15 87.0 81 60.5
BcaC04g21487 Brassica carinata HOM05D006591 ORTHO05D007861 2.2e-15 87.0 115 47.8
C09p31230 Brassica napus HOM05D006591 ORTHO05D007861 2.2e-15 87.0 115 47.8
BolC9t55979H Brassica oleracea HOM05D006591 ORTHO05D007861 2.2e-15 87.0 115 47.8
CARHR145770 Cardamine hirsuta HOM05D006591 ORTHO05D007861 2.2e-15 87.0 81 60.5
PSO017G3262 Papaver somniferum HOM05D006591 ORTHO05D007861 2.2e-15 87.0 121 63.6
Potri.010G161300 Populus trichocarpa HOM05D006591 ORTHO05D007861 4.8e-15 85.9 84 59.5
Actinidia19919 Actinidia chinensis HOM05D006591 ORTHO05D007861 6.3e-15 85.5 122 45.1
RcHm_v2.0_Chr4g0438821 Rosa chinensis HOM05D006591 ORTHO05D007861 6.3e-15 85.5 109 67.9
TAR374G1558 Trochodendron aralioides HOM05D006591 ORTHO05D007861 1.1e-14 84.7 121 58.7
A09p24440 Brassica napus HOM05D006591 ORTHO05D007861 1.8e-14 84.0 116 57.8
PGR119G1238 Punica granatum HOM05D006591 ORTHO05D007861 1.8e-14 84.0 109 45.9
BcaB07g30669 Brassica carinata HOM05D006591 ORTHO05D007861 2.4e-14 83.6 116 62.1
Sabra10G0122800 Salix brachista HOM05D006591 ORTHO05D007861 2.4e-14 83.6 82 59.8
Manes.05G107800 Manihot esculenta HOM05D006591 ORTHO05D007861 3.1e-14 83.2 113 64.6
Lsat_1_v5_gn_3_56260 Lactuca sativa HOM05D006591 ORTHO05D007861 4.1e-14 82.8 111 64.0
Rhsim12G0134100 Rhododendron simsii HOM05D006591 ORTHO05D007861 4.1e-14 82.8 79 60.8
CSS0024373 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 5.3e-14 82.4 88 58.0
Duzib268G0337 Durio zibethinus HOM05D006591 ORTHO05D007861 5.3e-14 82.4 116 49.1
FAN22G1196 Fragaria x ananassa HOM05D006591 ORTHO05D007861 5.3e-14 82.4 110 65.5
THA.LOC104801815 Tarenaya hassleriana HOM05D006591 ORTHO05D007861 5.3e-14 82.4 68 61.8
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 6.9e-14 82.0 111 57.7
Thhalv10004832m.g Eutrema salsugineum HOM05D006591 ORTHO05D007861 9.1e-14 81.6 84 60.7
AT2G03430 Arabidopsis thaliana HOM05D006591 ORTHO05D007861 1.2e-13 81.3 78 59.0
CSS0002938 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.5e-13 80.9 88 58.0
CSS0020090 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 1.5e-13 80.9 88 58.0
CSS0029304 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 2.0e-13 80.5 88 58.0
FAN07G2187 Fragaria x ananassa HOM05D006591 ORTHO05D007861 2.0e-13 80.5 110 64.5
Aqoxy3G00449 Aquilegia oxysepala HOM05D006591 ORTHO05D007861 2.6e-13 80.1 79 55.7
PSO478G2874 Papaver somniferum HOM05D006591 ORTHO05D007861 2.6e-13 80.1 121 61.2
vmacro16368 Vaccinium macrocarpon HOM05D006591 ORTHO05D007861 2.6e-13 80.1 119 42.9
Migut.E00061 Erythranthe guttata HOM05D006591 ORTHO05D007861 3.4e-13 79.7 114 65.8
Lj3C1032T3 Lonicera japonica HOM05D006591 ORTHO05D007861 3.4e-13 79.7 122 56.6
Cc11_g12350 Coffea canephora HOM05D006591 ORTHO05D007861 4.5e-13 79.3 68 64.7
SGA_v2.0_scaffold287G47153 Striga asiatica HOM05D006591 ORTHO05D007861 4.5e-13 79.3 107 66.4
Oeu028261.1 Olea europaea HOM05D006591 ORTHO05D007861 7.7e-13 78.6 115 55.7
FAN17G0139 Fragaria x ananassa HOM05D006591 ORTHO05D007861 1.0e-12 78.2 77 55.8
EL10Ac6g14958 Beta vulgaris HOM05D006591 ORTHO05D007861 1.3e-12 77.8 97 64.9
MSTRG.2323 Avicennia marina HOM05D006591 ORTHO05D007861 1.7e-12 77.4 116 60.3
HanXRQChr17g0545461 Helianthus annuus HOM05D006591 ORTHO05D007861 5.0e-12 75.9 117 49.6
FvH4_4g30470 Fragaria vesca HOM05D006591 ORTHO05D007861 2.5e-11 73.6 77 53.2
FAN12G1471 Fragaria x ananassa HOM05D006591 ORTHO05D007861 2.5e-11 73.6 77 53.2
ECA246G1963 Erigeron canadensis HOM05D006591 ORTHO05D007861 3.2e-11 73.2 114 56.1
Eucgr.G02461 Eucalyptus grandis HOM05D006591 ORTHO05D007861 3.2e-11 73.2 77 51.9
ATR0111G005 Amborella trichopoda HOM05D006591 ORTHO05D007861 5.5e-11 72.4 125 52.8
Sc11g0002290 Simmondsia chinensis HOM05D006591 ORTHO05D007861 5.5e-11 72.4 101 60.4
Zm00001eb214530 Zea mays HOM05D006591 ORTHO05D007861 5.5e-11 72.4 109 64.2
Actinidia31944 Actinidia chinensis HOM05D006591 ORTHO05D007861 9.4e-11 71.6 71 57.7
AagrBONN_evm.TU.Sc2ySwM_344.1136 Anthoceros agrestis HOM05D006591 ORTHO05D007861 1.0e-09 68.2 107 41.1
unitig_22.g5555 Utricularia gibba HOM05D006591 ORTHO05D007861 1.0e-09 68.2 66 57.6
CDE07G0054 Ceratophyllum demersum HOM05D006591 ORTHO05D007861 1.4e-09 67.8 112 57.1
Nitab4.5_0000334g0240 Nicotiana tabacum HOM05D006591 ORTHO05D007861 1.4e-09 67.8 78 56.4
SEGI_35394 Sequoiadendron giganteum HOM05D006591 ORTHO05D007861 3.9e-09 66.2 71 50.7
HPP92_018457 Vanilla planifolia HOM05D006591 ORTHO05D007861 5.1e-09 65.9 67 53.7
Sed0000747 Sechium edule HOM05D006591 ORTHO05D007861 3.3e-08 63.2 59 57.6
C06p01310 Brassica napus HOM05D006591 ORTHO05D007861 5.7e-08 62.4 125 38.4
Mapoly0001s0139 Marchantia polymorpha HOM05D006591 ORTHO05D007861 9.7e-08 61.6 69 49.3
Ah.02g126600 Amaranthus hybridus HOM05D006591 ORTHO05D007861 1.7e-07 60.8 64 56.2
CSS0029980 Camellia sinensis var. sinensis HOM05D006591 ORTHO05D007861 2.4e-06 57.0 63 58.7
Cre02.g117550 Chlamydomonas reinhardtii HOM05D006591 ORTHO05D007861 9.1e-06 55.1 100 35.0


User provided reference genes

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