Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 3.8e-174 614.8 314 100.0
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 3.9e-155 551.6 340 84.1
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 1.4e-152 543.1 336 84.8
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 7.9e-140 500.7 340 77.4
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 5.1e-139 498.0 335 77.0
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 1.1e-136 490.3 334 76.3
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 7.2e-133 477.6 334 76.6
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 7.9e-132 474.2 334 74.9
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 1.8e-128 463.0 341 71.8
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 1.8e-120 436.4 330 68.5
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 6.5e-118 427.9 324 68.8
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.0e-115 420.6 337 66.2
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 4.4e-114 415.2 337 64.4
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 3.1e-112 409.1 337 64.1
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 1.6e-111 406.8 340 63.2
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 4.5e-111 405.2 335 65.7
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 4.5e-111 405.2 340 64.7
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 7.7e-111 404.4 340 63.8
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.2e-110 402.9 318 65.7
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 2.2e-110 402.9 335 63.9
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 8.5e-110 401.0 336 64.3
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 1.1e-109 400.6 339 61.9
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 5.5e-109 398.3 337 60.5
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 1.6e-108 396.7 338 62.7
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 8.0e-108 394.4 335 63.0
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 8.0e-108 394.4 334 63.2
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.0e-107 394.0 338 61.2
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 4.0e-107 392.1 337 60.2
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 2.0e-106 389.8 338 61.5
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.6e-106 389.4 336 62.8
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 3.4e-106 389.0 334 60.5
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 4.4e-106 388.7 339 60.8
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 9.8e-106 387.5 338 61.8
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.3e-105 387.1 316 63.0
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 4.9e-105 385.2 336 62.8
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 5.4e-104 381.7 338 61.8
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 1.2e-103 380.6 336 60.4
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 1.6e-103 380.2 340 60.6
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 2.0e-103 379.8 338 61.2
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.0e-103 379.8 347 60.8
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 3.5e-103 379.0 336 62.2
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 3.5e-103 379.0 338 60.7
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 5.9e-103 378.3 335 61.8
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 5.9e-103 378.3 380 55.3
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.0e-102 377.5 336 59.5
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 1.0e-102 377.5 337 60.8
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 1.7e-102 376.7 336 61.0
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.3e-102 376.3 338 60.1
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 2.3e-102 376.3 338 60.1
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 2.9e-102 375.9 335 60.9
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 5.0e-102 375.2 336 59.8
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 5.0e-102 375.2 336 59.8
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 1.9e-101 373.2 337 61.4
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 4.3e-101 372.1 337 61.4
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 5.6e-101 371.7 337 61.1
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 5.6e-101 371.7 339 59.0
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 9.5e-101 370.9 345 59.4
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 9.5e-101 370.9 337 60.5
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 1.2e-100 370.5 338 60.7
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 3.6e-100 369.0 335 60.9
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 8.0e-100 367.9 336 61.9
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 1.8e-99 366.7 336 59.5
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 1.8e-99 366.7 336 59.2
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 3.4e-98 362.5 338 58.6
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 4.4e-98 362.1 338 57.7
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 9.8e-98 360.9 337 58.8
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 1.3e-97 360.5 335 57.3
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 1.3e-97 360.5 333 57.4
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 1.7e-97 360.1 347 57.9
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 2.2e-97 359.8 263 70.0
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 4.9e-97 358.6 339 56.0
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 2.4e-96 356.3 270 66.3
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 3.2e-96 355.9 330 57.6
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 7.0e-96 354.8 337 57.0
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 9.2e-96 354.4 334 58.1
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 9.2e-96 354.4 362 53.3
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.0e-94 350.9 380 52.6
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 3.0e-94 349.4 356 53.1
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 1.5e-93 347.1 347 54.2
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 9.5e-93 344.4 270 68.1
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 7.5e-90 334.7 326 56.1
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 3.7e-89 332.4 368 50.0
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 4.9e-89 332.0 288 60.4
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 1.9e-88 330.1 337 56.1
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 2.1e-84 316.6 281 58.4
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 5.8e-82 308.5 334 53.0
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 7.5e-82 308.1 287 57.8
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 1.1e-80 304.3 272 58.5
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 2.4e-80 303.1 288 60.4
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 2.7e-79 299.7 287 57.1
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 4.6e-79 298.9 322 52.5
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 5.1e-78 295.4 274 61.7
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 1.9e-77 293.5 274 59.9
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 1.9e-77 293.5 287 57.1
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 9.5e-77 291.2 290 58.3
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 2.8e-76 289.7 253 59.3
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 3.6e-76 289.3 271 57.9
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 1.3e-73 280.8 300 52.0
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 3.1e-67 259.6 246 52.8
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.6e-63 247.3 259 49.4
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 1.6e-63 247.3 223 62.3
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 1.0e-62 244.6 223 61.9
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 1.5e-61 240.7 197 71.1
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 3.3e-61 239.6 260 51.2
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 8.1e-60 235.0 158 76.6
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 1.8e-59 233.8 263 52.5
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 1.9e-56 223.8 232 57.3
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 2.1e-55 220.3 195 57.9
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 1.8e-51 207.2 252 45.2
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 3.8e-49 199.5 215 54.0
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.3e-44 184.5 199 50.8
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 2.9e-33 146.7 157 52.2
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 4.2e-32 142.9 266 36.1
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 4.2e-32 142.9 254 36.2
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 6.1e-31 139.0 195 48.2
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 1.4e-22 111.3 88 65.9
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 2.7e-15 87.0 69 60.9
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 4.1e-11 73.2 70 54.3
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 1.0e-09 68.6 78 51.3
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 4.7e-07 59.7 70 40.0


User provided reference genes

Program Settings