Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g042620 Medicago truncatula HOM05D006937 ORTHO05D008747 4.2e-78 294.7 152 100.0
Glyma.02G111700 Glycine max HOM05D006937 ORTHO05D008747 1.3e-68 263.1 152 86.8
Lj1g0016193 Lotus japonicus HOM05D006937 ORTHO05D008747 5.1e-68 261.2 152 86.2
Glyma.01G053200 Glycine max HOM05D006937 ORTHO05D008747 8.7e-68 260.4 152 84.9
Lj6g0000786 Lotus japonicus HOM05D006937 ORTHO05D008747 3.3e-67 258.5 152 84.2
TPR.G19944 Trifolium pratense HOM05D006937 ORTHO05D008747 1.6e-66 256.1 152 84.2
VMungo1215G2773 Vigna mungo HOM05D006937 ORTHO05D008747 1.1e-65 253.4 151 84.8
Phvul.001G169600 Phaseolus vulgaris HOM05D006937 ORTHO05D008747 1.5e-64 249.6 152 82.2
Lalb_Chr10g0098481 Lupinus albus HOM05D006937 ORTHO05D008747 1.7e-63 246.1 152 83.6
Gohir.A05G305601 Gossypium hirsutum HOM05D006937 ORTHO05D008747 1.9e-62 242.7 152 78.3
Prupe.1G280000 Prunus persica HOM05D006937 ORTHO05D008747 1.9e-62 242.7 152 81.6
Gorai.009G325600 Gossypium raimondii HOM05D006937 ORTHO05D008747 9.3e-62 240.4 152 78.3
Manes.01G032100 Manihot esculenta HOM05D006937 ORTHO05D008747 9.3e-62 240.4 152 78.9
Thecc.02G339100 Theobroma cacao HOM05D006937 ORTHO05D008747 1.2e-61 240.0 152 80.3
CiPaw.06G089000 Carya illinoinensis HOM05D006937 ORTHO05D008747 2.1e-61 239.2 146 81.5
COL.COLO4_27967 Corchorus olitorius HOM05D006937 ORTHO05D008747 2.1e-61 239.2 152 78.3
Gohir.D05G305600 Gossypium hirsutum HOM05D006937 ORTHO05D008747 2.1e-61 239.2 152 77.6
Ciclev10032989m.g Citrus clementina HOM05D006937 ORTHO05D008747 3.6e-61 238.4 152 78.9
QL03p069840 Quercus lobata HOM05D006937 ORTHO05D008747 6.1e-61 237.7 144 81.2
Atru.chr11.1713 Acer truncatum HOM05D006937 ORTHO05D008747 1.3e-60 236.5 152 79.6
TWI60G0457 Tripterygium wilfordii HOM05D006937 ORTHO05D008747 1.3e-60 236.5 152 78.3
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 3.0e-60 235.3 143 79.0
CANSAT64G0520 Cannabis sativa HOM05D006937 ORTHO05D008747 3.9e-60 235.0 152 76.3
CAN.G1642.3 Capsicum annuum HOM05D006937 ORTHO05D008747 5.1e-60 234.6 143 78.3
FvH4_4g30700 Fragaria vesca HOM05D006937 ORTHO05D008747 5.1e-60 234.6 152 76.3
FAN17G2174 Fragaria x ananassa HOM05D006937 ORTHO05D008747 5.1e-60 234.6 152 76.3
Psat2g127680 Pisum sativum HOM05D006937 ORTHO05D008747 5.1e-60 234.6 130 93.1
arahy.Tifrunner.gnm1.ann1.TRF8LB Arachis hypogaea HOM05D006937 ORTHO05D008747 6.7e-60 234.2 152 77.0
MD16G1066900 Malus domestica HOM05D006937 ORTHO05D008747 6.7e-60 234.2 153 78.4
FAN07G0310 Fragaria x ananassa HOM05D006937 ORTHO05D008747 8.7e-60 233.8 152 76.3
Eucgr.G02475 Eucalyptus grandis HOM05D006937 ORTHO05D008747 1.5e-59 233.0 152 77.0
Potri.008G091400 Populus trichocarpa HOM05D006937 ORTHO05D008747 1.5e-59 233.0 152 77.6
RcHm_v2.0_Chr4g0439101 Rosa chinensis HOM05D006937 ORTHO05D008747 1.9e-59 232.6 152 75.7
MD13G1068100 Malus domestica HOM05D006937 ORTHO05D008747 4.3e-59 231.5 153 78.4
CAN.G964.22 Capsicum annuum HOM05D006937 ORTHO05D008747 7.4e-59 230.7 143 78.3
CsaV3_7G033500 Cucumis sativus L. HOM05D006937 ORTHO05D008747 7.4e-59 230.7 151 73.5
MSTRG.2329 Avicennia marina HOM05D006937 ORTHO05D008747 9.7e-59 230.3 141 79.4
Migut.E00068 Erythranthe guttata HOM05D006937 ORTHO05D008747 9.7e-59 230.3 145 75.9
arahy.Tifrunner.gnm1.ann1.8BL9U8 Arachis hypogaea HOM05D006937 ORTHO05D008747 1.6e-58 229.6 151 76.8
TAR629G2875 Trochodendron aralioides HOM05D006937 ORTHO05D008747 1.6e-58 229.6 143 77.6
CSS0011527 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 2.2e-58 229.2 143 76.9
arahy.Tifrunner.gnm1.ann1.A48TS2 Arachis hypogaea HOM05D006937 ORTHO05D008747 2.8e-58 228.8 159 74.2
Sed0004013 Sechium edule HOM05D006937 ORTHO05D008747 6.3e-58 227.6 152 73.0
MELO3C024261.2 Cucumis melo HOM05D006937 ORTHO05D008747 8.2e-58 227.3 151 72.8
Sed0007221 Sechium edule HOM05D006937 ORTHO05D008747 8.2e-58 227.3 152 73.0
PGSC0003DMG401028340 Solanum tuberosum HOM05D006937 ORTHO05D008747 1.1e-57 226.9 144 72.9
GSVIVG01025409001 Vitis vinifera HOM05D006937 ORTHO05D008747 2.4e-57 225.7 144 76.4
Sopen05g007730 Solanum pennellii HOM05D006937 ORTHO05D008747 6.9e-57 224.2 144 70.8
DCAR_018308 Daucus carota HOM05D006937 ORTHO05D008747 9.0e-57 223.8 143 75.5
SGA_v2.0_scaffold287G47146 Striga asiatica HOM05D006937 ORTHO05D008747 1.5e-56 223.0 141 75.2
Nn3g17337 Nelumbo nucifera HOM05D006937 ORTHO05D008747 3.4e-56 221.9 143 75.5
Zm00001eb326530 Zea mays HOM05D006937 ORTHO05D008747 2.9e-55 218.8 146 74.0
Os07g0595800 Oryza sativa ssp. japonica HOM05D006937 ORTHO05D008747 5.0e-55 218.0 140 75.7
HanXRQChr17g0537301 Helianthus annuus HOM05D006937 ORTHO05D008747 1.4e-54 216.5 140 75.0
SGA_v2.0_scaffold114G32026 Striga asiatica HOM05D006937 ORTHO05D008747 1.4e-54 216.5 151 70.9
EL10Ac6g13467 Beta vulgaris HOM05D006937 ORTHO05D008747 3.2e-54 215.3 143 71.3
ATR0730G163 Amborella trichopoda HOM05D006937 ORTHO05D008747 5.5e-54 214.5 141 72.3
Cc11_g12540 Coffea canephora HOM05D006937 ORTHO05D008747 5.5e-54 214.5 142 74.6
ECA246G2190 Erigeron canadensis HOM05D006937 ORTHO05D008747 2.1e-53 212.6 141 72.3
Eucgr.D01709 Eucalyptus grandis HOM05D006937 ORTHO05D008747 3.6e-53 211.8 152 72.4
Lsat_1_v5_gn_3_20221 Lactuca sativa HOM05D006937 ORTHO05D008747 4.6e-53 211.5 142 72.5
unitig_744.g24284 Utricularia gibba HOM05D006937 ORTHO05D008747 1.0e-52 210.3 153 68.6
Haze_11954 Corylus avellana HOM05D006937 ORTHO05D008747 8.8e-52 207.2 153 68.6
Lj3A1033G46 Lonicera japonica HOM05D006937 ORTHO05D008747 8.8e-52 207.2 131 75.6
PSO675G6138 Papaver somniferum HOM05D006937 ORTHO05D008747 2.0e-51 206.1 142 69.0
Aqoxy3G03499 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.6e-51 205.7 140 70.0
Aqoxy5G02063 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 2.6e-51 205.7 140 70.0
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 5.7e-51 204.5 129 76.7
Duzib268G1027 Durio zibethinus HOM05D006937 ORTHO05D008747 7.4e-51 204.1 152 70.4
Ca_04880_v3 Cicer arietinum L. HOM05D006937 ORTHO05D008747 2.2e-50 202.6 110 92.7
SEGI_41088 Sequoiadendron giganteum HOM05D006937 ORTHO05D008747 2.8e-50 202.2 145 67.6
Hund25447 Selenicereus undatus HOM05D006937 ORTHO05D008747 4.1e-49 198.4 143 67.8
Nitab4.5_0000391g0170 Nicotiana tabacum HOM05D006937 ORTHO05D008747 6.9e-49 197.6 143 68.5
AUR62024142 Chenopodium quinoa HOM05D006937 ORTHO05D008747 5.0e-47 191.4 143 66.4
Nitab4.5_0008978g0010 Nicotiana tabacum HOM05D006937 ORTHO05D008747 1.4e-46 189.9 190 55.8
PGR142G2813 Punica granatum HOM05D006937 ORTHO05D008747 2.5e-46 189.1 152 63.2
PGR119G1353 Punica granatum HOM05D006937 ORTHO05D008747 7.2e-46 187.6 157 61.8
AUR62005588 Chenopodium quinoa HOM05D006937 ORTHO05D008747 2.7e-45 185.7 139 66.2
PSO541G5056 Papaver somniferum HOM05D006937 ORTHO05D008747 1.4e-44 183.3 142 63.4
FAN12G3635 Fragaria x ananassa HOM05D006937 ORTHO05D008747 6.7e-44 181.0 132 69.7
Actinidia31958 Actinidia chinensis HOM05D003669 ORTHO05D005046 8.8e-44 180.6 148 61.5
Rhsim12G0077900 Rhododendron simsii HOM05D006937 ORTHO05D008747 4.4e-43 178.3 111 75.7
AL1G39070 Arabidopsis lyrata HOM05D006937 ORTHO05D008747 2.8e-42 175.6 150 57.3
THA.LOC104808654 Tarenaya hassleriana HOM05D006937 ORTHO05D008747 3.7e-42 175.3 152 57.2
Aqoxy5G02982 Aquilegia oxysepala HOM05D006937 ORTHO05D008747 6.3e-42 174.5 140 62.1
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.8e-41 172.9 150 58.7
BcaC06g35132 Brassica carinata HOM05D006937 ORTHO05D008747 4.1e-41 171.8 145 60.0
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 4.1e-41 171.8 150 58.0
Carub.0001s2437 Capsella rubella HOM05D006937 ORTHO05D008747 4.1e-41 171.8 150 56.7
AT1G26660 Arabidopsis thaliana HOM05D006937 ORTHO05D008747 1.2e-40 170.2 150 56.0
Thhalv10008997m.g Eutrema salsugineum HOM05D006937 ORTHO05D008747 1.6e-40 169.9 150 56.0
Aa31LG7G8430 Aethionema arabicum HOM05D006937 ORTHO05D008747 3.5e-40 168.7 152 57.2
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 4.5e-40 168.3 150 57.3
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 4.5e-40 168.3 150 57.3
BcaB03g14081 Brassica carinata HOM05D006937 ORTHO05D008747 5.9e-40 167.9 143 59.4
Sc11g0000570 Simmondsia chinensis HOM05D006937 ORTHO05D008747 7.7e-40 167.5 109 69.7
BcaB05g21932 Brassica carinata HOM05D006937 ORTHO05D008747 1.3e-39 166.8 143 58.7
AagrBONN_evm.TU.Sc2ySwM_228.447 Anthoceros agrestis HOM05D006937 ORTHO05D008747 1.7e-39 166.4 137 59.1
arahy.Tifrunner.gnm1.ann1.J4SELD Arachis hypogaea HOM05D006937 ORTHO05D008747 2.2e-39 166.0 111 76.6
CDE11G0882 Ceratophyllum demersum HOM05D006937 ORTHO05D008747 2.9e-39 165.6 156 55.8
Sp6g00050 Schrenkiella parvula HOM05D006937 ORTHO05D008747 6.5e-39 164.5 143 56.6
Mapoly0006s0094 Marchantia polymorpha HOM05D006937 ORTHO05D008747 2.5e-38 162.5 141 57.4
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 3.2e-38 162.2 126 66.7
CBR_g48697 Chara braunii HOM05D006937 ORTHO05D008747 5.5e-38 161.4 139 55.4
Pp3c21_19110 Physcomitrium patens HOM05D006937 ORTHO05D008747 8.0e-37 157.5 133 57.9
Peaxi162Scf00222g00024 Petunia axillaris HOM05D006937 ORTHO05D008747 1.8e-33 146.4 116 60.3
SHI35111 Sapria himalayana HOM05D006937 ORTHO05D008747 3.1e-33 145.6 140 55.0
Sabra08G0068400 Salix brachista HOM05D006937 ORTHO05D008747 1.7e-31 139.8 116 62.1
CSS0016362 Camellia sinensis var. sinensis HOM05D006937 ORTHO05D008747 6.8e-28 127.9 147 52.4
SalBow8G3842 Salvia bowleyana HOM05D006937 ORTHO05D008747 1.5e-27 126.7 141 46.1
Ah.02g130690 Amaranthus hybridus HOM05D006937 ORTHO05D008747 9.8e-27 124.0 143 47.6
ClCG09G001850 Citrullus lanatus HOM05D006937 ORTHO05D008747 4.1e-25 118.6 77 75.3
PSO357G0488 Papaver somniferum HOM05D006937 ORTHO05D008747 4.1e-25 118.6 87 63.2
arahy.Tifrunner.gnm1.ann1.K4YSPN Arachis hypogaea HOM05D006937 ORTHO05D008747 9.1e-25 117.5 65 83.1
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 2.7e-16 89.4 75 58.7
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-15 86.7 98 48.0
Cpa.g.sc1.69 Carica papaya HOM05D006937 ORTHO05D008747 2.8e-13 79.3 45 88.9
Potri.010G163600 Populus trichocarpa HOM05D006937 ORTHO05D008747 6.1e-13 78.2 155 37.4
Sabra10G0124400 Salix brachista HOM05D006937 ORTHO05D008747 2.0e-11 73.2 108 41.7
PRCOL_00006274 Prasinoderma coloniale HOM05D006937 ORTHO05D008747 1.0e-07 60.8 138 30.4
Cc00_g19610 Coffea canephora HOM05D000421 ORTHO05D013979 5.6e-06 55.1 43 67.4


User provided reference genes

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