Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 7.1e-187 657.1 337 100.0
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 8.0e-138 494.2 297 85.5
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 9.1e-134 480.7 337 76.9
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 3.3e-115 419.1 292 74.3
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 7.2e-115 417.9 292 72.3
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 3.0e-113 412.5 338 68.0
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 1.8e-110 403.3 333 64.9
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 1.6e-109 400.2 220 89.5
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 6.4e-103 378.3 298 66.8
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.4e-102 377.1 298 66.8
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 7.0e-102 374.8 385 57.7
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 4.3e-99 365.5 289 65.4
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.6e-98 363.6 288 66.0
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 6.8e-97 358.2 277 64.3
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.2e-96 357.5 260 67.3
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 4.4e-96 355.5 261 66.3
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 9.8e-96 354.4 261 67.0
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.7e-95 353.6 271 65.7
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 6.4e-95 351.7 273 65.2
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.4e-94 350.5 271 63.8
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 1.9e-94 350.1 264 65.5
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 1.9e-94 350.1 259 69.5
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 1.9e-94 350.1 262 64.9
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 3.0e-92 342.8 290 62.8
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.1e-91 340.9 258 64.7
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 7.3e-91 338.2 258 63.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 9.5e-91 337.8 267 63.3
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.1e-90 336.7 289 62.3
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 2.1e-90 336.7 289 61.9
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-89 333.6 289 60.9
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 2.3e-89 333.2 309 58.9
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 2.3e-89 333.2 267 63.3
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 6.8e-89 331.6 262 63.4
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 8.9e-89 331.3 265 62.3
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.5e-88 330.5 262 63.4
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.6e-88 329.7 286 60.1
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 4.4e-88 328.9 261 60.2
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 9.9e-88 327.8 304 56.6
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.1e-86 324.3 262 63.4
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 1.1e-86 324.3 264 61.4
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 1.4e-86 323.9 263 60.5
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 3.2e-86 322.8 286 56.6
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 1.6e-85 320.5 254 64.2
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 2.7e-85 319.7 289 60.2
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.3e-84 317.4 260 60.0
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 8.6e-84 314.7 335 52.5
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 1.5e-83 313.9 286 55.2
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 1.5e-83 313.9 258 59.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 2.5e-83 313.2 258 59.3
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 3.3e-83 312.8 258 59.3
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 7.3e-83 311.6 258 59.7
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 7.3e-83 311.6 259 60.2
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.6e-82 310.5 335 52.5
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 3.6e-82 309.3 283 56.9
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 6.2e-82 308.5 322 52.2
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 8.1e-82 308.1 352 49.7
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 3.1e-81 306.2 223 66.8
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 3.1e-81 306.2 220 65.5
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.1e-81 306.2 244 60.2
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.5e-80 303.9 221 65.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.5e-80 303.9 224 63.8
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 2.6e-80 303.1 293 54.9
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 4.4e-80 302.4 270 57.0
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 2.2e-79 300.1 310 51.6
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 2.9e-79 299.7 289 53.6
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.8e-79 299.3 258 56.2
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 3.8e-79 299.3 262 56.1
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 6.4e-79 298.5 279 55.6
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 8.4e-79 298.1 262 56.1
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 1.9e-78 297.0 262 56.9
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.2e-78 296.2 290 55.5
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 3.5e-77 292.7 223 64.6
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 4.6e-77 292.4 265 54.0
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 1.3e-76 290.8 296 52.7
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 5.1e-76 288.9 258 54.3
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 3.3e-75 286.2 264 55.3
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 3.3e-75 286.2 293 51.9
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 4.3e-75 285.8 262 55.3
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.3e-75 285.0 287 53.3
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 9.6e-75 284.6 265 54.3
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 9.6e-75 284.6 262 54.2
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.2e-74 282.0 262 52.7
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 1.4e-73 280.8 259 54.8
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 2.4e-73 280.0 223 61.9
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 9.0e-73 278.1 273 53.8
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.2e-72 277.7 262 52.7
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.5e-72 277.3 284 52.5
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 2.0e-72 276.9 262 52.3
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 2.0e-72 276.9 334 45.2
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.6e-72 276.6 222 61.3
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 3.4e-72 276.2 257 54.1
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 3.4e-72 276.2 263 51.0
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 5.8e-72 275.4 262 52.7
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 9.9e-72 274.6 280 50.0
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 9.9e-72 274.6 291 47.8
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 1.3e-71 274.2 263 51.3
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 1.3e-71 274.2 263 51.3
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.3e-71 274.2 265 50.9
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.7e-71 273.9 282 52.5
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 2.2e-71 273.5 262 53.1
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.9e-71 273.1 223 57.4
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.8e-71 272.7 263 54.4
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 3.8e-71 272.7 281 49.8
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 3.8e-71 272.7 289 54.7
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 4.9e-71 272.3 267 53.2
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.9e-71 272.3 281 49.8
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.9e-71 272.3 291 47.8
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 1.1e-70 271.2 281 49.8
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 2.4e-70 270.0 277 52.0
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 4.2e-70 269.2 285 49.8
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 7.1e-70 268.5 257 52.9
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 3.5e-69 266.2 341 45.7
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 6.0e-69 265.4 260 51.5
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 3.9e-68 262.7 227 62.6
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.9e-67 260.4 254 51.6
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 7.4e-67 258.5 252 51.2
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 2.4e-65 253.4 261 49.4
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.0e-64 250.4 259 51.0
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 3.4e-64 249.6 251 50.6
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.4e-62 244.2 237 51.1
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 4.6e-61 239.2 222 53.2
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 6.7e-60 235.3 215 55.8
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.5e-59 233.4 215 54.9
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.5e-59 233.4 219 53.9
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 9.6e-59 231.5 216 53.2
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 2.1e-58 230.3 215 54.4
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 3.7e-58 229.6 215 54.9
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 4.8e-58 229.2 251 50.6
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 3.1e-57 226.5 213 56.3
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.1e-57 226.5 206 56.3
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 9.0e-57 224.9 215 53.5
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.5e-56 224.2 200 58.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.5e-56 224.2 215 53.5
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.0e-56 223.8 206 55.3
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.6e-56 223.4 215 54.0
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.6e-53 214.2 168 60.1
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 2.8e-50 203.4 311 39.9
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.4e-49 200.3 228 48.7
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 7.2e-46 188.7 196 48.5
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.2e-45 188.0 156 59.6
TPR.G39184 Trifolium pratense HOM05D001860 ORTHO05D004922 9.7e-43 178.3 134 71.6
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.8e-42 176.8 143 61.5
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 1.1e-41 174.9 173 55.5
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 6.9e-41 172.2 124 65.3
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 2.0e-40 170.6 239 44.4
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 2.1e-37 160.6 206 46.1
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 1.8e-36 157.5 172 47.1
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.8e-36 157.5 260 37.7
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 1.5e-35 154.5 134 55.2
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.5e-35 154.5 140 56.4
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.8e-34 150.2 127 60.6
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 6.3e-34 149.1 120 63.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 8.2e-34 148.7 234 38.5
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 6.9e-33 145.6 133 59.4
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-32 144.8 120 60.0
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.2e-32 144.8 137 58.4
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.8e-31 139.8 189 40.2
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 1.4e-30 137.9 144 49.3
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.7e-29 133.7 146 49.3
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 8.8e-28 128.6 251 35.5
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.2e-24 118.2 182 39.0
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.6e-24 117.1 83 65.1
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.2e-23 114.0 76 67.1
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.2e-21 108.2 85 67.1
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 6.7e-20 102.4 90 65.6
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 9.7e-19 98.6 85 55.3
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.5e-14 84.0 171 38.0
Actinidia19883 Actinidia chinensis HOM05D001860 ORTHO05D004922 8.0e-13 79.0 100 45.0
MCO03G203 Micromonas commoda HOM05D023757 ORTHO05D024904 5.7e-11 72.8 160 31.9
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.3e-10 68.9 189 28.6
TPR.G13891 Trifolium pratense HOM05D001860 ORTHO05D004922 1.4e-09 68.2 38 86.8
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.6e-08 64.7 59 54.2
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 3.5e-08 63.5 148 29.7
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 4.5e-08 63.2 174 28.2
Zm00001eb254460 Zea mays HOM05D001860 ORTHO05D004922 1.3e-07 61.6 74 50.0
MCO11G161 Micromonas commoda HOM05D019459 ORTHO05D019626 6.5e-07 59.3 138 31.9
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.5e-06 57.4 31 93.5


User provided reference genes

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