Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 5.2e-154 547.7 288 100.0
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.6e-153 545.4 288 99.7
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 4.6e-142 508.1 288 91.3
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 9.8e-137 490.3 288 89.6
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 9.5e-132 473.8 288 83.3
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 4.0e-130 468.4 288 81.2
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 2.0e-129 466.1 288 83.3
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 2.3e-125 452.6 288 82.6
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.1e-124 450.3 288 80.2
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 4.7e-123 444.9 288 80.9
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 1.8e-114 416.4 289 73.0
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 8.9e-114 414.1 288 71.9
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.2e-113 413.7 288 71.9
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 1.5e-113 413.3 287 75.3
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 4.4e-113 411.8 286 72.0
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 1.3e-112 410.2 292 74.3
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 1.7e-112 409.8 288 72.2
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 2.2e-112 409.5 292 74.3
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.9e-112 408.3 288 73.6
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 6.4e-112 407.9 288 71.9
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 1.4e-111 406.8 286 73.8
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 7.1e-111 404.4 290 70.3
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 9.3e-111 404.1 289 71.3
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 1.0e-109 400.6 289 70.9
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 5.1e-109 398.3 287 70.7
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.5e-108 396.7 287 70.4
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 1.9e-108 396.4 287 71.8
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 3.3e-108 395.6 288 70.1
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.3e-108 395.2 286 71.7
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 7.3e-108 394.4 286 70.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 9.6e-108 394.0 287 69.7
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.3e-107 393.7 288 69.4
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.6e-107 393.3 287 70.0
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 2.8e-107 392.5 245 83.3
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 1.1e-106 390.6 254 81.9
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.0e-106 388.7 286 72.7
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 4.0e-106 388.7 281 71.9
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 1.5e-105 386.7 282 69.5
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.5e-105 386.7 285 68.4
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 2.6e-105 386.0 281 68.3
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 9.9e-105 384.0 259 75.3
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.7e-104 383.3 286 69.2
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.2e-104 382.9 286 69.2
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.4e-103 380.2 290 67.6
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 1.9e-103 379.8 283 68.2
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.9e-103 379.8 282 67.7
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 3.2e-103 379.0 282 68.8
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 5.4e-103 378.3 297 68.0
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 1.2e-102 377.1 286 68.9
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 1.6e-102 376.7 287 67.9
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.3e-101 373.6 282 68.4
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.7e-101 373.2 282 66.0
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.7e-101 373.2 294 66.0
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 2.3e-101 372.9 293 66.2
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 2.3e-101 372.9 282 67.7
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 5.1e-101 371.7 288 68.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.6e-101 371.3 292 67.8
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 1.1e-100 370.5 286 67.8
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 1.5e-100 370.2 244 77.9
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 1.9e-100 369.8 272 70.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.5e-100 369.4 282 66.7
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 7.4e-100 367.9 320 63.1
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.4e-100 367.9 272 70.6
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 9.6e-100 367.5 282 66.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 1.3e-99 367.1 283 66.1
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 2.8e-99 365.9 281 66.5
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 3.6e-99 365.5 282 66.3
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 1.1e-98 364.0 285 67.4
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 1.1e-98 364.0 285 67.4
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 1.1e-98 364.0 285 67.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.4e-98 363.6 290 65.9
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 1.4e-98 363.6 280 66.1
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.4e-98 362.8 229 77.3
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 5.3e-98 361.7 285 66.3
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 5.8e-97 358.2 285 66.3
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 9.9e-97 357.5 278 67.3
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 9.9e-97 357.5 278 67.3
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.7e-96 356.7 285 66.0
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 1.7e-96 356.7 281 64.4
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 4.9e-96 355.1 285 65.6
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 282 64.2
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 8.4e-96 354.4 287 64.5
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.4e-95 353.6 292 63.7
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 1.4e-95 353.6 291 62.9
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 1.9e-95 353.2 277 68.2
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 2.4e-95 352.8 230 74.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 5.5e-95 351.7 285 64.9
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 7.1e-95 351.3 230 75.2
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 3.5e-94 349.0 285 65.6
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 3.5e-94 349.0 285 65.6
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 3.5e-94 349.0 285 65.6
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 4.6e-94 348.6 291 62.9
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 7.9e-94 347.8 285 65.6
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 1.0e-93 347.4 285 65.6
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 1.8e-93 346.7 292 62.3
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.9e-93 345.5 283 64.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 5.1e-93 345.1 286 66.8
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 5.1e-93 345.1 229 72.9
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 1.5e-92 343.6 259 66.8
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 1.9e-92 343.2 292 63.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 4.8e-91 338.6 288 62.2
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.1e-90 337.4 216 75.0
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 1.4e-90 337.0 275 65.5
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 6.9e-90 334.7 288 63.5
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.2e-89 334.0 282 62.4
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 5.5e-87 325.1 239 67.8
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 7.1e-87 324.7 295 58.6
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 7.1e-87 324.7 252 67.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-86 323.6 286 61.5
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.1e-86 323.2 218 74.3
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 4.6e-86 322.0 288 60.4
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 2.4e-82 309.7 282 58.9
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 9.0e-82 307.8 229 67.2
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 3.6e-78 295.8 245 61.6
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 1.3e-77 293.9 231 64.5
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 1.1e-76 290.8 231 64.1
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 8.2e-75 284.6 230 60.4
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 6.5e-72 275.0 233 58.4
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 3.6e-70 269.2 292 49.7
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.2e-65 254.2 276 49.6
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 2.2e-64 250.0 289 45.3
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 9.7e-60 234.6 210 61.9
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.2e-59 233.4 156 69.9
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.7e-56 223.8 139 75.5
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-51 207.6 140 73.6
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 1.3e-51 207.6 265 46.4
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.2e-51 206.8 197 49.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.7e-51 206.1 212 56.1
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.2e-51 204.9 197 49.2
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.4e-50 204.1 263 46.4
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.4e-50 203.4 197 48.2
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 4.1e-50 202.6 225 53.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.3e-50 202.2 197 48.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.1e-42 176.4 162 59.3
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-41 174.1 197 44.2
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-36 156.8 183 47.5
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 4.9e-35 152.5 77 98.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.8e-30 136.7 83 81.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.3e-27 127.9 119 56.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.4e-27 125.6 220 41.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-26 124.8 206 41.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-25 120.6 106 61.3
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.0e-25 120.6 106 61.3
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.7e-25 120.2 188 35.1
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.3e-23 113.2 217 32.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.6e-23 112.5 190 37.4
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.8e-22 110.2 205 32.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-20 103.2 59 83.1
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-18 97.8 58 79.3
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.1e-18 96.3 57 78.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-17 94.7 58 77.6
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.1e-15 88.2 68 67.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.2e-14 82.4 54 74.1
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.5e-12 77.8 91 39.6
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 9.8e-12 75.1 51 68.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 6.6e-08 62.4 89 42.7
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 2.8e-06 57.0 60 45.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 2.8e-06 57.0 60 45.0


User provided reference genes

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