Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 3.1e-122 441.8 223 100.0
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 1.3e-112 409.8 216 95.8
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 1.8e-66 256.5 207 69.6
Lj2g0019721 Lotus japonicus HOM05D002932 ORTHO05D003208 8.1e-46 188.0 207 58.0
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 2.7e-41 172.9 211 53.6
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 3.5e-41 172.6 215 54.0
Glyma.01G045900 Glycine max HOM05D002932 ORTHO05D003208 1.0e-40 171.0 208 54.3
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 2.4e-29 133.3 214 44.9
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 2.0e-28 130.2 215 45.6
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 3.4e-28 129.4 212 43.9
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 3.2e-26 122.9 211 44.1
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 7.9e-25 118.2 223 42.2
arahy.Tifrunner.gnm1.ann1.71GWZM Arachis hypogaea HOM05D002932 ORTHO05D003208 5.1e-24 115.5 222 41.4
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 5.1e-24 115.5 219 42.5
arahy.Tifrunner.gnm1.ann1.M9LJWH Arachis hypogaea HOM05D002932 ORTHO05D003208 3.6e-22 109.4 224 40.2
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 1.8e-21 107.1 221 40.7
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.4e-21 106.7 215 40.5
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 2.4e-21 106.7 215 40.5
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.5e-20 104.0 215 40.0
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 3.4e-20 102.8 213 39.4
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 3.0e-16 89.7 237 37.6
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.9e-16 89.4 221 33.5
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 8.7e-16 88.2 210 37.6
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.5e-15 86.7 232 37.5
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.1e-14 83.6 230 30.4
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 2.8e-14 83.2 235 31.9
COL.COLO4_06371 Corchorus olitorius HOM05D002932 ORTHO05D003208 8.1e-14 81.6 185 38.4
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 8.1e-14 81.6 221 35.3
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.4e-13 80.9 229 30.6
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 1.8e-13 80.5 200 38.0
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.8e-13 80.5 234 31.2
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.8e-13 80.5 234 31.2
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 2.4e-13 80.1 229 31.9
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.1e-13 79.7 230 33.9
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 3.1e-13 79.7 222 36.0
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 4.0e-13 79.3 230 33.0
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 4.0e-13 79.3 222 33.8
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 5.3e-13 79.0 233 30.5
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 5.3e-13 79.0 232 28.9
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 1.2e-12 77.8 245 35.1
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 1.2e-12 77.8 225 33.3
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 1.5e-12 77.4 145 40.7
MSTRG.17303 Avicennia marina HOM05D002932 ORTHO05D003208 2.0e-12 77.0 180 38.9
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 7.6e-12 75.1 226 31.0
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 7.6e-12 75.1 226 31.0
arahy.Tifrunner.gnm1.ann1.7X5UPK Arachis hypogaea HOM05D046058 ORTHO05D003208 1.0e-11 74.7 214 33.6
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 1.0e-11 74.7 229 32.3
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 1.0e-11 74.7 230 30.4
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 1.3e-11 74.3 233 31.8
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.7e-11 73.9 258 34.5
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 1.7e-11 73.9 223 32.3
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 2.2e-11 73.6 229 29.3
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 2.9e-11 73.2 228 31.1
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 2.9e-11 73.2 230 30.4
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 2.9e-11 73.2 230 28.7
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 3.8e-11 72.8 228 29.8
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 3.8e-11 72.8 206 37.4
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 3.8e-11 72.8 227 33.0
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 6.5e-11 72.0 232 31.9
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 8.4e-11 71.6 226 31.0
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 8.4e-11 71.6 224 32.6
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 8.4e-11 71.6 228 29.4
arahy.Tifrunner.gnm1.ann1.R0FZSZ Arachis hypogaea HOM05D046058 ORTHO05D003208 1.1e-10 71.2 220 33.2
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 1.4e-10 70.9 227 30.0
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 1.9e-10 70.5 229 30.1
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.9e-10 70.5 217 33.6
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 2.5e-10 70.1 235 30.6
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 3.2e-10 69.7 231 29.0
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 4.2e-10 69.3 230 31.3
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 4.2e-10 69.3 264 30.7
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 5.5e-10 68.9 228 30.7
TWI59G0718 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 5.5e-10 68.9 206 34.0
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 7.1e-10 68.6 228 29.8
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 7.1e-10 68.6 229 29.7
Hma1.2p1_0783F.1_g216930 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 9.3e-10 68.2 163 34.4
Oeu063673.2 Olea europaea HOM05D002932 ORTHO05D003208 9.3e-10 68.2 212 31.1
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 1.2e-09 67.8 230 31.3
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.6e-09 67.4 229 27.5
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.6e-09 67.4 206 35.9
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 1.6e-09 67.4 229 29.7
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 2.1e-09 67.0 228 28.9
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 2.7e-09 66.6 229 28.8
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 2.7e-09 66.6 227 30.0
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 3.5e-09 66.2 236 33.5
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 3.5e-09 66.2 236 28.0
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 3.5e-09 66.2 258 27.9
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 4.6e-09 65.9 236 28.8
Oeu054360.1 Olea europaea HOM05D002932 ORTHO05D003208 4.6e-09 65.9 260 31.5
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 6.0e-09 65.5 166 33.7
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 6.0e-09 65.5 191 33.5
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 6.0e-09 65.5 191 33.5
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 7.9e-09 65.1 240 27.5
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 7.9e-09 65.1 235 25.5
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 7.9e-09 65.1 226 30.5
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 7.9e-09 65.1 217 30.9
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.0e-08 64.7 235 26.0
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 1.0e-08 64.7 236 28.0
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 1.0e-08 64.7 265 30.2
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 1.0e-08 64.7 274 27.7
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 1.3e-08 64.3 228 28.5
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.3e-08 64.3 219 34.7
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 1.3e-08 64.3 230 27.4
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 1.3e-08 64.3 261 28.0
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 1.8e-08 63.9 230 28.3
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 1.8e-08 63.9 243 28.4
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 2.3e-08 63.5 237 28.3
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 2.3e-08 63.5 231 28.1
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 5.1e-08 62.4 263 31.2
CsaV3_3G008520 Cucumis sativus L. HOM05D002932 ORTHO05D003208 8.7e-08 61.6 218 31.2
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 8.7e-08 61.6 237 27.8
Eucgr.E00092 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.1e-07 61.2 209 33.0
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 1.5e-07 60.8 231 27.3
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 1.5e-07 60.8 229 28.4
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 1.9e-07 60.5 239 28.0
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 2.5e-07 60.1 238 28.6
Manes.05G028200 Manihot esculenta HOM05D002932 ORTHO05D003208 2.5e-07 60.1 218 31.2
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 2.5e-07 60.1 236 28.8
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 2.5e-07 60.1 238 29.4
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 3.3e-07 59.7 243 28.4
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 3.3e-07 59.7 239 30.1
MELO3C006073.2 Cucumis melo HOM05D002932 ORTHO05D003208 5.7e-07 58.9 218 30.7
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 5.7e-07 58.9 243 29.2
Sed0004021 Sechium edule HOM05D002932 ORTHO05D003208 5.7e-07 58.9 207 30.9
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 9.6e-07 58.2 229 31.0
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 9.6e-07 58.2 234 29.5
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 1.3e-06 57.8 232 31.5
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 1.6e-06 57.4 226 28.3
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 1.6e-06 57.4 244 29.5
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 2.1e-06 57.0 241 27.4
CSS0045579 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.8e-06 56.6 177 31.1
Oeu009283.1 Olea europaea HOM05D002932 ORTHO05D003208 2.8e-06 56.6 237 30.4
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 3.7e-06 56.2 225 26.2
SalBow4G2867 Salvia bowleyana HOM05D002932 ORTHO05D003208 3.7e-06 56.2 219 29.2
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 4.8e-06 55.8 178 29.2
Cc02_g38700 Coffea canephora HOM05D002932 ORTHO05D003208 4.8e-06 55.8 260 28.5
SalBow3G2518 Salvia bowleyana HOM05D002932 ORTHO05D003208 4.8e-06 55.8 230 30.4
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 6.3e-06 55.5 178 36.0
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 6.3e-06 55.5 222 32.4
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 6.3e-06 55.5 225 25.8
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 8.2e-06 55.1 227 28.2
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 8.2e-06 55.1 173 31.2
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 8.2e-06 55.1 226 29.2
SGA_v2.0_scaffold11G05690 Striga asiatica HOM05D002932 ORTHO05D003208 8.2e-06 55.1 245 29.8


User provided reference genes

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