Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g039800 Medicago truncatula HOM05D000940 ORTHO05D000782 5.8e-36 153.7 76 100.0
Medtr6g027720 Medicago truncatula HOM05D000940 ORTHO05D000782 5.6e-15 84.0 43 95.3
TPR.G35640 Trifolium pratense HOM05D000940 ORTHO05D000782 1.8e-13 79.0 43 90.7
Ca_25683_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 2.4e-13 78.6 43 88.4
VMungo0464G1970 Vigna mungo HOM05D000940 ORTHO05D000782 2.6e-12 75.1 43 81.4
Lalb_Chr21g0317281 Lupinus albus HOM05D000940 ORTHO05D000782 3.4e-12 74.7 43 81.4
Phvul.004G072600 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 1.7e-11 72.4 43 79.1
Glyma.17G187200 Glycine max HOM05D000940 ORTHO05D000782 2.2e-11 72.0 43 79.1
arahy.Tifrunner.gnm1.ann1.NB21C6 Arachis hypogaea HOM05D000940 ORTHO05D000782 4.9e-11 70.9 43 76.7
arahy.Tifrunner.gnm1.ann1.QV5TSY Arachis hypogaea HOM05D000940 ORTHO05D000782 4.9e-11 70.9 43 76.7
Lalb_Chr14g0364751 Lupinus albus HOM05D000940 ORTHO05D000782 6.4e-11 70.5 43 74.4
Lalb_Chr22g0358821 Lupinus albus HOM05D000940 ORTHO05D000782 1.4e-10 69.3 43 74.4
arahy.Tifrunner.gnm1.ann1.QDP4P6 Arachis hypogaea HOM05D000940 ORTHO05D000782 1.9e-10 68.9 43 74.4
arahy.Tifrunner.gnm1.ann1.Z1V611 Arachis hypogaea HOM05D000940 ORTHO05D000782 1.9e-10 68.9 43 74.4
Glyma.16G037500 Glycine max HOM05D000940 ORTHO05D000782 3.2e-10 68.2 43 69.8
Ca_08304_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 7.1e-10 67.0 43 69.8
CsaV3_4G012040 Cucumis sativus L. HOM05D000940 ORTHO05D000782 9.2e-10 66.6 43 69.8
Glyma.19G115800 Glycine max HOM05D000940 ORTHO05D000782 1.2e-09 66.2 43 67.4
Medtr7g086420 Medicago truncatula HOM05D000940 ORTHO05D000782 2.1e-09 65.5 43 65.1
Phvul.001G115100 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 2.1e-09 65.5 43 67.4
Psat3g087400 Pisum sativum HOM05D000940 ORTHO05D000782 2.1e-09 65.5 43 67.4
ClCG04G005510 Citrullus lanatus HOM05D000940 ORTHO05D000782 3.5e-09 64.7 43 65.1
VMungo1383G0227 Vigna mungo HOM05D000940 ORTHO05D000782 3.5e-09 64.7 43 65.1
Aa31LG5G14270 Aethionema arabicum HOM05D000940 ORTHO05D000782 4.6e-09 64.3 43 65.1
AT3G03770 Arabidopsis thaliana HOM05D000940 ORTHO05D000782 4.6e-09 64.3 43 65.1
Lj1g0015411 Lotus japonicus HOM05D000940 ORTHO05D000782 4.6e-09 64.3 43 67.4
CARHR077830 Cardamine hirsuta HOM05D000940 ORTHO05D000782 6.0e-09 63.9 43 65.1
TPR.G17859 Trifolium pratense HOM05D000940 ORTHO05D000782 6.0e-09 63.9 43 65.1
Carub.0003s0293 Capsella rubella HOM05D000940 ORTHO05D000782 7.8e-09 63.5 43 65.1
Sed0007643 Sechium edule HOM05D000940 ORTHO05D000782 7.8e-09 63.5 43 62.8
BcaC01g04392 Brassica carinata HOM05D000940 ORTHO05D000782 1.0e-08 63.2 43 62.8
A03p33400 Brassica napus HOM05D000940 ORTHO05D000782 1.0e-08 63.2 43 62.8
C03p40620 Brassica napus HOM05D000940 ORTHO05D000782 1.0e-08 63.2 43 62.8
BolC3t16327H Brassica oleracea HOM05D000940 ORTHO05D000782 1.0e-08 63.2 43 62.8
Ciclev10018927m.g Citrus clementina HOM05D000940 ORTHO05D000782 1.0e-08 63.2 42 64.3
BcaC05g29908 Brassica carinata HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 62.8
C05p63210 Brassica napus HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 62.8
BolC5t34983H Brassica oleracea HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 62.8
BraA05t23101Z Brassica rapa HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 62.8
MELO3C008838.2 Cucumis melo HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 67.4
MD02G1262400 Malus domestica HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 65.1
QL07p017592 Quercus lobata HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 62.8
Sp3g02740 Schrenkiella parvula HOM05D000940 ORTHO05D000782 1.3e-08 62.8 43 62.8
BcaB04g19356 Brassica carinata HOM05D000940 ORTHO05D000782 1.7e-08 62.4 43 62.8
BcaC05g30251 Brassica carinata HOM05D000940 ORTHO05D000782 1.7e-08 62.4 43 62.8
FAN26G2058 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.7e-08 62.4 45 62.2
MBI05_g12104_MAGBIO Magnolia biondii HOM05D000940 ORTHO05D000782 1.7e-08 62.4 43 60.5
Potri.013G064300 Populus trichocarpa HOM05D000940 ORTHO05D000782 1.7e-08 62.4 42 66.7
RcHm_v2.0_Chr1g0331461 Rosa chinensis HOM05D000940 ORTHO05D000782 1.7e-08 62.4 43 65.1
AL3G13580 Arabidopsis lyrata HOM05D000940 ORTHO05D000782 2.3e-08 62.0 43 62.8
Cfa017701 Carpinus fangiana HOM05D000940 ORTHO05D000782 3.0e-08 61.6 43 60.5
Haze_20437 Corylus avellana HOM05D000940 ORTHO05D000782 3.0e-08 61.6 43 60.5
Psat1g090000 Pisum sativum HOM05D000940 ORTHO05D000782 3.0e-08 61.6 36 83.3
Potri.019G039000 Populus trichocarpa HOM05D000940 ORTHO05D000782 3.0e-08 61.6 42 66.7
A05p43630 Brassica napus HOM05D000940 ORTHO05D000782 3.9e-08 61.2 43 60.5
FvH4_1g28510 Fragaria vesca HOM05D000940 ORTHO05D000782 3.9e-08 61.2 43 65.1
Prupe.2G063900 Prunus persica HOM05D000940 ORTHO05D000782 3.9e-08 61.2 43 62.8
RcHm_v2.0_Chr3g0496251 Rosa chinensis HOM05D000940 ORTHO05D000782 3.9e-08 61.2 43 65.1
Manes.09G137500 Manihot esculenta HOM05D000940 ORTHO05D000782 5.1e-08 60.8 40 67.5
BraA03t12517Z Brassica rapa HOM05D000940 ORTHO05D000782 6.6e-08 60.5 43 60.5
Sabra19G0049900 Salix brachista HOM05D000940 ORTHO05D000782 6.6e-08 60.5 42 66.7
FAN19G2711 Fragaria x ananassa HOM05D000940 ORTHO05D000782 8.7e-08 60.1 43 62.8
FAN26G2940 Fragaria x ananassa HOM05D000940 ORTHO05D000782 8.7e-08 60.1 43 62.8
Atru.chr12.1180 Acer truncatum HOM05D000940 ORTHO05D000782 1.5e-07 59.3 40 65.0
Eucgr.K01521 Eucalyptus grandis HOM05D000940 ORTHO05D000782 1.5e-07 59.3 43 65.1
Gohir.D13G166900 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.9e-07 58.9 43 58.1
Sabra13G0056300 Salix brachista HOM05D000940 ORTHO05D000782 1.9e-07 58.9 42 61.9
THA.LOC104820788 Tarenaya hassleriana HOM05D000940 ORTHO05D000782 1.9e-07 58.9 43 62.8
TWI60G1256 Tripterygium wilfordii HOM05D000940 ORTHO05D000782 1.9e-07 58.9 42 64.3
Atru.chr12.1172 Acer truncatum HOM05D000940 ORTHO05D000782 2.5e-07 58.5 40 65.0
CSS0020570 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 2.5e-07 58.5 44 59.1
CANSAT78G2163 Cannabis sativa HOM05D000940 ORTHO05D000782 2.5e-07 58.5 42 59.5
CiPaw.09G168500 Carya illinoinensis HOM05D000940 ORTHO05D000782 2.5e-07 58.5 40 62.5
FvH4_7g05090 Fragaria vesca HOM05D000940 ORTHO05D000782 2.5e-07 58.5 43 60.5
FAN01G2965 Fragaria x ananassa HOM05D000940 ORTHO05D000782 2.5e-07 58.5 43 60.5
FAN03G1499 Fragaria x ananassa HOM05D000940 ORTHO05D000782 2.5e-07 58.5 43 60.5
FAN06G2069 Fragaria x ananassa HOM05D000940 ORTHO05D000782 2.5e-07 58.5 43 60.5
FAN10G3589 Fragaria x ananassa HOM05D000940 ORTHO05D000782 2.5e-07 58.5 43 60.5
Dinv04775 Davidia involucrata HOM05D000940 ORTHO05D000782 4.3e-07 57.8 43 62.8
Glyma.12G170700 Glycine max HOM05D000940 ORTHO05D000782 4.3e-07 57.8 43 62.8
Sabra08G0008900 Salix brachista HOM05D000940 ORTHO05D000782 4.3e-07 57.8 43 62.8
BcaC05g24638 Brassica carinata HOM05D000940 ORTHO05D000782 5.6e-07 57.4 44 56.8
C05p01790 Brassica napus HOM05D000940 ORTHO05D000782 5.6e-07 57.4 44 56.8
BolC5t28957H Brassica oleracea HOM05D000940 ORTHO05D000782 5.6e-07 57.4 44 56.8
ECA246G4266 Erigeron canadensis HOM05D001065 ORTHO05D002020 5.6e-07 57.4 43 58.1
Thhalv10020088m.g Eutrema salsugineum HOM05D000940 ORTHO05D000782 5.6e-07 57.4 43 60.5
Gohir.D11G242300 Gossypium hirsutum HOM05D000940 ORTHO05D000782 5.6e-07 57.4 43 55.8
Gorai.007G256600 Gossypium raimondii HOM05D000940 ORTHO05D000782 5.6e-07 57.4 43 55.8
Gorai.013G195600 Gossypium raimondii HOM05D000940 ORTHO05D000782 5.6e-07 57.4 43 55.8
Lj3g0021973 Lotus japonicus HOM05D000940 ORTHO05D000782 5.6e-07 57.4 43 62.8
Manes.10G070700 Manihot esculenta HOM05D000940 ORTHO05D000782 5.6e-07 57.4 43 60.5
TAR623G0746 Trochodendron aralioides HOM05D000940 ORTHO05D000782 5.6e-07 57.4 43 58.1
Actinidia18368 Actinidia chinensis HOM05D000940 ORTHO05D000782 7.3e-07 57.0 43 60.5
Duzib177G0475 Durio zibethinus HOM05D000940 ORTHO05D000782 7.3e-07 57.0 44 56.8
CiPaw.13G046700 Carya illinoinensis HOM05D000940 ORTHO05D000782 9.6e-07 56.6 40 62.5
Duzib106G1382 Durio zibethinus HOM05D000940 ORTHO05D000782 9.6e-07 56.6 43 55.8
Atru.chr2.1487 Acer truncatum HOM05D000940 ORTHO05D000782 1.2e-06 56.2 40 62.5
CANSAT56G0182 Cannabis sativa HOM05D000940 ORTHO05D000782 1.2e-06 56.2 53 50.9
CsaV3_6G004480 Cucumis sativus L. HOM05D000940 ORTHO05D000782 1.2e-06 56.2 43 60.5
Dinv25056 Davidia involucrata HOM05D000940 ORTHO05D000782 1.2e-06 56.2 40 60.0
Gohir.A13G164000 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.2e-06 56.2 43 55.8
Hma1.2p1_1039F.1_g250860 Hydrangea macrophylla HOM05D000940 ORTHO05D000782 1.2e-06 56.2 40 62.5
MD12G1009300 Malus domestica HOM05D000940 ORTHO05D000782 1.2e-06 56.2 43 55.8
Nitab4.5_0004148g0020 Nicotiana tabacum HOM05D000940 ORTHO05D000782 1.2e-06 56.2 43 53.5
Potri.008G014300 Populus trichocarpa HOM05D000940 ORTHO05D000782 1.2e-06 56.2 43 58.1
Rhsim03G0050600 Rhododendron simsii HOM05D000940 ORTHO05D000782 1.2e-06 56.2 43 58.1
Thecc.05G243700 Theobroma cacao HOM05D000940 ORTHO05D000782 1.2e-06 56.2 43 55.8
CANSAT56G0710 Cannabis sativa HOM05D000940 ORTHO05D000782 1.6e-06 55.8 53 50.9
COL.COLO4_28625 Corchorus olitorius HOM05D000940 ORTHO05D000782 1.6e-06 55.8 43 55.8
Glyma.15G215600 Glycine max HOM05D000940 ORTHO05D000782 1.6e-06 55.8 40 65.0
CDE10G1074 Ceratophyllum demersum HOM05D000940 ORTHO05D000782 2.1e-06 55.5 43 53.5
Lalb_Chr03g0032321 Lupinus albus HOM05D000940 ORTHO05D000782 2.1e-06 55.5 53 56.6
QL04p050237 Quercus lobata HOM05D000940 ORTHO05D000782 2.1e-06 55.5 50 58.0
Rhsim04G0167700 Rhododendron simsii HOM05D000940 ORTHO05D000782 2.1e-06 55.5 44 61.4
THA.LOC104802879 Tarenaya hassleriana HOM05D000940 ORTHO05D000782 2.1e-06 55.5 44 56.8
Actinidia26590 Actinidia chinensis HOM05D000940 ORTHO05D000782 2.8e-06 55.1 41 58.5
Cfa010459 Carpinus fangiana HOM05D000940 ORTHO05D000782 2.8e-06 55.1 40 62.5
Cc06_g17380 Coffea canephora HOM05D000940 ORTHO05D000782 2.8e-06 55.1 42 52.4
Nitab4.5_0001623g0040 Nicotiana tabacum HOM05D000940 ORTHO05D000782 2.8e-06 55.1 43 53.5
Phvul.011G185500 Phaseolus vulgaris HOM05D000940 ORTHO05D000782 2.8e-06 55.1 43 58.1
Sed0020987 Sechium edule HOM05D000940 ORTHO05D000782 2.8e-06 55.1 40 60.0
VMungo1127G1168 Vigna mungo HOM05D000940 ORTHO05D000782 2.8e-06 55.1 43 58.1
Cpa.g.sc161.23 Carica papaya HOM05D000940 ORTHO05D000782 3.6e-06 54.7 43 55.8
arahy.Tifrunner.gnm1.ann1.0G4IZN Arachis hypogaea HOM05D000940 ORTHO05D000782 4.7e-06 54.3 40 62.5
CAN.G134.58 Capsicum annuum HOM05D000940 ORTHO05D000782 4.7e-06 54.3 40 60.0
Haze_03412 Corylus avellana HOM05D000940 ORTHO05D000782 4.7e-06 54.3 40 62.5
Gohir.A11G231000 Gossypium hirsutum HOM05D000940 ORTHO05D000782 4.7e-06 54.3 43 53.5
Solyc01g096940.4 Solanum lycopersicum HOM05D000940 ORTHO05D000782 4.7e-06 54.3 40 55.0
Sopen01g040650 Solanum pennellii HOM05D000940 ORTHO05D000782 4.7e-06 54.3 40 55.0
PGSC0003DMG400027499 Solanum tuberosum HOM05D000940 ORTHO05D000782 4.7e-06 54.3 40 55.0
arahy.Tifrunner.gnm1.ann1.9QIA1G Arachis hypogaea HOM05D000940 ORTHO05D000782 6.2e-06 53.9 40 62.5
vmacro08593 Vaccinium macrocarpon HOM05D000940 ORTHO05D000782 6.2e-06 53.9 43 60.5
Actinidia37808 Actinidia chinensis HOM05D000940 ORTHO05D000782 8.1e-06 53.5 41 56.1
ClCG08G008490 Citrullus lanatus HOM05D000940 ORTHO05D000782 8.1e-06 53.5 40 60.0
Glyma.08G229100 Glycine max HOM05D000940 ORTHO05D000782 8.1e-06 53.5 40 62.5
GSVIVG01029950001 Vitis vinifera HOM05D000940 ORTHO05D000782 8.1e-06 53.5 40 52.5


User provided reference genes

Program Settings