Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 5.9e-266 921.0 750 100.0
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 1.5e-258 896.3 750 97.2
Psat5g067680 Pisum sativum HOM05D006503 ORTHO05D008116 3.8e-148 529.6 750 74.5
TPR.G16108 Trifolium pratense HOM05D006503 ORTHO05D008116 7.4e-136 488.8 736 69.6
Medtr8g463610 Medicago truncatula HOM05D006503 ORTHO05D008116 3.6e-130 469.9 285 94.0
TPR.G29649 Trifolium pratense HOM05D006503 ORTHO05D008116 4.0e-113 413.3 753 68.9
Ca_06133_v3 Cicer arietinum L. HOM05D006503 ORTHO05D008116 4.3e-107 393.3 671 72.4
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 5.8e-72 276.6 715 62.5
arahy.Tifrunner.gnm1.ann1.ER6M1I Arachis hypogaea HOM05D006503 ORTHO05D008116 9.3e-70 269.2 750 59.3
arahy.Tifrunner.gnm1.ann1.YC2S1L Arachis hypogaea HOM05D006503 ORTHO05D008116 3.5e-69 267.3 325 55.7
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 5.1e-68 263.5 307 58.0
arahy.Tifrunner.gnm1.ann1.97ANKK Arachis hypogaea HOM05D006503 ORTHO05D008116 7.3e-67 259.6 325 55.7
arahy.Tifrunner.gnm1.ann1.KC4DMY Arachis hypogaea HOM05D006503 ORTHO05D008116 2.1e-66 258.1 307 58.0
arahy.Tifrunner.gnm1.ann1.RL700P Arachis hypogaea HOM05D006503 ORTHO05D008116 1.8e-65 255.0 307 58.3
Glyma.06G144800 Glycine max HOM05D006503 ORTHO05D008116 3.9e-60 237.3 337 52.5
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 4.0e-57 227.3 316 52.8
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 5.3e-57 226.9 316 52.8
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 2.6e-56 224.6 317 51.7
arahy.Tifrunner.gnm1.ann1.1KXV0X Arachis hypogaea HOM05D006503 ORTHO05D008116 1.7e-55 221.9 325 47.4
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 2.9e-55 221.1 324 50.0
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 2.5e-54 218.0 303 49.2
arahy.Tifrunner.gnm1.ann1.J10LLE Arachis hypogaea HOM05D006503 ORTHO05D008116 7.1e-54 216.5 188 60.1
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 6.0e-53 213.4 315 49.2
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 8.7e-52 209.5 314 48.7
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 7.4e-51 206.5 319 49.2
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 7.4e-51 206.5 310 51.9
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 7.4e-51 206.5 323 47.4
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 9.6e-51 206.1 318 48.7
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 2.8e-50 204.5 314 48.1
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 4.8e-50 203.8 314 49.0
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 2.4e-49 201.4 326 45.4
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 3.1e-49 201.1 317 49.5
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 5.3e-49 200.3 370 44.3
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 1.0e-47 196.1 317 47.6
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.3e-47 195.7 316 46.5
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 1.7e-47 195.3 305 50.5
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 1.1e-46 192.6 315 47.9
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 4.2e-46 190.7 315 46.7
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 4.6e-45 187.2 323 45.2
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 6.0e-45 186.8 323 44.0
ECA248G2018 Erigeron canadensis HOM05D006503 ORTHO05D008116 1.0e-44 186.0 322 46.6
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 1.0e-44 186.0 312 44.9
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 3.0e-44 184.5 326 42.0
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 6.7e-44 183.3 317 45.4
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 3.3e-43 181.0 304 46.7
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 4.3e-43 180.6 311 42.1
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 5.7e-43 180.3 314 45.9
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 9.7e-43 179.5 324 42.0
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 9.7e-43 179.5 324 42.0
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 9.7e-43 179.5 322 42.2
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 1.3e-42 179.1 308 43.2
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.3e-42 179.1 317 44.2
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 1.6e-42 178.7 322 41.9
BcaB05g25205 Brassica carinata HOM05D006503 ORTHO05D008116 4.8e-42 177.2 322 42.2
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 4.8e-42 177.2 322 41.9
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 8.2e-42 176.4 318 45.3
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 2.4e-41 174.9 322 41.3
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 6.9e-41 173.3 330 38.8
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 9.0e-41 172.9 305 46.9
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 1.5e-40 172.2 308 43.2
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 4.5e-40 170.6 303 40.9
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 1.0e-39 169.5 320 42.5
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 8.5e-39 166.4 314 45.2
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 1.1e-38 166.0 316 44.9
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 1.4e-38 165.6 318 32.1
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 3.2e-38 164.5 317 43.2
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 6.7e-36 156.8 315 42.5
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 9.7e-35 152.9 316 42.4
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 9.7e-35 152.9 261 48.3
Sopen02g028560 Solanum pennellii HOM05D006503 ORTHO05D008116 3.7e-34 151.0 303 44.6
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 6.3e-34 150.2 322 42.9
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 6.3e-34 150.2 305 34.1
PGSC0003DMG401003570 Solanum tuberosum HOM05D006503 ORTHO05D008116 3.1e-33 147.9 303 44.2
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 6.9e-33 146.7 329 38.6
MELO3C019605.2 Cucumis melo HOM05D006503 ORTHO05D008116 1.2e-32 146.0 328 40.2
Cpa.g.sc32.63 Carica papaya HOM05D006503 ORTHO05D008116 2.2e-31 141.7 176 40.9
CsaV3_6G013320 Cucumis sativus L. HOM05D006503 ORTHO05D008116 6.5e-31 140.2 316 41.5
CDE05G1884 Ceratophyllum demersum HOM05D006503 ORTHO05D008116 1.9e-30 138.7 254 34.6
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 3.2e-30 137.9 247 49.0
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 1.6e-29 135.6 302 41.4
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.6e-29 135.6 317 39.4
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 3.6e-29 134.4 316 38.6
SGA_v2.0_scaffold10G05267 Striga asiatica HOM05D006503 ORTHO05D008116 3.6e-29 134.4 269 42.8
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.0e-28 132.9 314 38.9
Solyc02g083780.3 Solanum lycopersicum HOM05D002880 ORTHO05D008116 2.3e-28 131.7 283 44.2
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 5.1e-28 130.6 330 38.8
Medtr3g094280 Medicago truncatula HOM05D006503 ORTHO05D008116 1.7e-26 125.6 87 71.3
TPR.G11576 Trifolium pratense HOM05D006503 ORTHO05D008116 7.0e-25 120.2 96 66.7
HPP92_001414 Vanilla planifolia HOM05D006503 ORTHO05D008116 1.2e-24 119.4 322 37.6
arahy.Tifrunner.gnm1.ann1.C3XHUQ Arachis hypogaea HOM05D006503 ORTHO05D008116 4.5e-24 117.5 140 46.4
arahy.Tifrunner.gnm1.ann1.6F2C80 Arachis hypogaea HOM05D006503 ORTHO05D008116 1.7e-23 115.5 102 54.9
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 3.8e-23 114.4 316 36.7
HPP92_001421 Vanilla planifolia HOM05D006503 ORTHO05D008116 8.5e-23 113.2 319 37.3
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 1.1e-22 112.8 228 49.1
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 3.6e-21 107.8 117 46.2
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 1.8e-20 105.5 228 45.2
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 2.3e-20 105.1 318 28.3
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 2.3e-20 105.1 182 52.2
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 3.0e-20 104.8 318 35.5
DCAR_022897 Daucus carota HOM05D006503 ORTHO05D008116 8.8e-20 103.2 321 35.5
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 8.8e-20 103.2 228 44.7
Phvul.009G141200 Phaseolus vulgaris HOM05D006503 ORTHO05D008116 4.4e-19 100.9 109 47.7
Zm00001eb221750 Zea mays HOM05D006503 ORTHO05D008116 3.7e-18 97.8 320 36.2
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 1.1e-17 96.3 325 36.0
Os09g0110200 Oryza sativa ssp. japonica HOM05D006503 ORTHO05D008116 1.0e-15 89.7 308 36.0
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 1.2e-13 82.8 74 56.8
arahy.Tifrunner.gnm1.ann1.LJ83VM Arachis hypogaea HOM05D006503 ORTHO05D008116 1.4e-12 79.3 101 42.6
CSS0042104 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 4.4e-11 74.3 103 32.0
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 4.4e-11 74.3 216 40.3
Nitab4.5_0000051g0090 Nicotiana tabacum HOM05D006503 ORTHO05D008116 9.7e-11 73.2 111 35.1
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 4.8e-10 70.9 107 34.6
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 4.8e-10 70.9 107 34.6
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 1.1e-09 69.7 107 34.6
Actinidia17234 Actinidia chinensis HOM05D006503 ORTHO05D008116 3.1e-09 68.2 105 31.4
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 1.6e-08 65.9 145 31.7
ATR0177G061 Amborella trichopoda HOM05D006503 ORTHO05D008116 7.7e-08 63.5 65 53.8
SEGI_34053 Sequoiadendron giganteum HOM05D006174 ORTHO05D007987 1.7e-07 62.4 151 27.8
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 2.2e-07 62.0 146 26.7
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 2.9e-07 61.6 151 25.8
Migut.G01062 Erythranthe guttata HOM05D040971 ORTHO05D003288 2.9e-07 61.6 146 30.1
HanXRQChr11g0326181 Helianthus annuus HOM05D006174 ORTHO05D007987 2.9e-07 61.6 150 29.3
Lsat_1_v5_gn_4_117540 Lactuca sativa HOM05D006174 ORTHO05D007987 2.9e-07 61.6 141 31.2
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 5.0e-07 60.8 148 27.7
PSO675G1088 Papaver somniferum HOM05D000424 ORTHO05D000355 5.0e-07 60.8 132 30.3
arahy.Tifrunner.gnm1.ann1.QIT2C2 Arachis hypogaea HOM05D002453 ORTHO05D008746 6.5e-07 60.5 107 36.4
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 6.5e-07 60.5 148 27.7
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 8.5e-07 60.1 142 26.1
Sc14g0003020 Simmondsia chinensis HOM05D006174 ORTHO05D007987 1.1e-06 59.7 141 29.1
Aqoxy5G01020 Aquilegia oxysepala HOM05D005622 ORTHO05D011376 1.5e-06 59.3 122 32.8
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 1.5e-06 59.3 356 22.2
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 1.5e-06 59.3 356 22.2
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 1.5e-06 59.3 150 27.3
EL10Ac4g09866 Beta vulgaris HOM05D000162 ORTHO05D000090 1.9e-06 58.9 151 29.8
TAR336G0003 Trochodendron aralioides HOM05D006174 ORTHO05D007987 1.9e-06 58.9 141 30.5
Oeu051440.2 Olea europaea HOM05D006080 ORTHO05D007382 2.5e-06 58.5 135 28.1
AL6G30300 Arabidopsis lyrata HOM05D007340 ORTHO05D008979 3.2e-06 58.2 162 30.2
SEGI_01901 Sequoiadendron giganteum HOM05D006503 ORTHO05D008116 3.2e-06 58.2 286 32.5
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 3.2e-06 58.2 286 22.0
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 4.2e-06 57.8 151 25.8
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 4.2e-06 57.8 69 42.0
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 4.2e-06 57.8 286 22.0
Aa31LG8G15540 Aethionema arabicum HOM05D000891 ORTHO05D000761 5.5e-06 57.4 145 29.0
Ca_25317_v3 Cicer arietinum L. HOM05D006174 ORTHO05D007987 5.5e-06 57.4 137 26.3
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 5.5e-06 57.4 152 27.0
BcaB05g25044 Brassica carinata HOM05D006174 ORTHO05D007987 7.2e-06 57.0 156 27.6
DCAR_005337 Daucus carota HOM05D006354 ORTHO05D007773 7.2e-06 57.0 122 31.1
QL09p033206 Quercus lobata HOM05D006174 ORTHO05D007987 7.2e-06 57.0 141 32.6
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 7.2e-06 57.0 67 44.8
ATR0751G052 Amborella trichopoda HOM05D006174 ORTHO05D007987 9.4e-06 56.6 160 25.6
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.4e-06 56.6 143 26.6
FvH4_1g30170 Fragaria vesca HOM05D007545 ORTHO05D009579 9.4e-06 56.6 44 52.3
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 9.4e-06 56.6 118 29.7


User provided reference genes

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