Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g039110 Medicago truncatula HOM05D001070 ORTHO05D002096 2.4e-88 328.9 185 100.0
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 2.2e-41 172.9 291 41.6
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 1.6e-18 97.1 176 38.6
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 4.2e-16 89.0 266 31.6
TPR.G19445 Trifolium pratense HOM05D001070 ORTHO05D002096 3.6e-15 85.9 87 52.9
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.3e-14 83.2 256 30.9
Medtr1g110440 Medicago truncatula HOM05D001070 ORTHO05D002096 3.0e-14 82.8 85 56.5
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 6.3e-12 75.1 295 26.8
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 1.4e-11 73.9 292 26.4
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 1.4e-11 73.9 292 26.4
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.4e-11 73.9 277 27.8
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.8e-11 73.6 317 27.4
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 1.6e-10 70.5 264 27.3
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 1.6e-10 70.5 326 25.8
Medtr5g080950 Medicago truncatula HOM05D001070 ORTHO05D002096 2.7e-10 69.7 41 82.9
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 7.7e-10 68.2 80 50.0
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 2.9e-09 66.2 331 23.9
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 6.5e-09 65.1 108 41.7
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 1.1e-08 64.3 94 44.7
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 1.1e-08 64.3 94 43.6
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-08 64.3 94 44.7
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-08 64.3 94 44.7
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-08 64.3 94 44.7
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-08 64.3 94 44.7
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-08 64.3 94 44.7
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 1.5e-08 63.9 94 42.6
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.5e-08 63.9 94 43.6
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.5e-08 63.9 94 43.6
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-08 63.9 94 43.6
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 1.9e-08 63.5 94 43.6
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 2.5e-08 63.2 94 43.6
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 3.2e-08 62.8 95 43.2
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.2e-08 62.8 94 43.6
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.2e-08 62.8 94 43.6
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.2e-08 62.8 94 43.6
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 3.2e-08 62.8 94 43.6
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 5.5e-08 62.0 92 43.5
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 5.5e-08 62.0 321 24.6
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 9.5e-08 61.2 90 44.4
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.2e-07 60.8 55 56.4
Solyc00g500191.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.2e-07 60.8 55 56.4
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.2e-07 60.8 55 56.4
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 1.6e-07 60.5 94 41.5
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 1.6e-07 60.5 81 43.2
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.1e-07 60.1 96 41.7
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 2.8e-07 59.7 93 41.9
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 2.8e-07 59.7 94 41.5
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 3.6e-07 59.3 48 54.2
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 4.7e-07 58.9 95 42.1
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 4.7e-07 58.9 95 42.1
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.1e-07 58.5 90 43.3
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.1e-07 58.5 90 43.3
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.1e-07 58.5 90 43.3
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.1e-07 58.5 90 43.3
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 6.1e-07 58.5 94 42.6
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 8.0e-07 58.2 90 42.2
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.4e-06 57.4 94 40.4
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 2.3e-06 56.6 56 46.4
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 2.3e-06 56.6 94 41.5
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 3.0e-06 56.2 98 38.8
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 3.0e-06 56.2 64 48.4
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 6.8e-06 55.1 94 39.4
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 6.8e-06 55.1 94 39.4
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 6.8e-06 55.1 94 39.4
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 6.8e-06 55.1 94 39.4
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.8e-06 54.7 86 39.5
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 8.8e-06 54.7 94 39.4


User provided reference genes

Program Settings